Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001695-TA|BGIBMGA001695-PA|IPR011682|Glycosyl hydrolases
38, C-terminal, IPR011013|Galactose mutarotase-like
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si... 229 4e-60
At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si... 217 3e-56
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si... 199 4e-51
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si... 191 1e-48
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 84 3e-16
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 32 1.0
At5g07620.1 68418.m00873 protein kinase family protein contains ... 31 1.8
At3g32280.1 68416.m04116 hypothetical protein 30 5.5
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 30 5.5
At5g51770.1 68418.m06419 protein kinase family protein contains ... 29 7.3
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 29 7.3
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 29 7.3
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 29 7.3
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 9.6
>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase GI:3522867 from
[Homo sapiens]
Length = 1019
Score = 229 bits (560), Expect = 4e-60
Identities = 202/635 (31%), Positives = 303/635 (47%), Gaps = 93/635 (14%)
Query: 2 QHHDAITGTEKQHVAHDYERILSTAIDDAYSSPDRPSTYDRLNRTTTFSKAAQGDSGKA- 60
QHHDA++GT++QHVA DY LS Y ++ + + +F AA+ + K
Sbjct: 408 QHHDAVSGTQRQHVAADYALRLSMG----YLQAEK-----LVASSLSFLSAAKSSTEKKN 458
Query: 61 PLFSYDRCHF-NESRCHTSETSETFMRLRGSESGSVVGRISTKRLDAAYKPAVLQVTVYN 119
P + +C N S C SE RL +S L V VYN
Sbjct: 459 PGTKFQQCPLLNISYCPASEA-----RLLSGKS--------------------LVVVVYN 493
Query: 120 PLAWGVREAVKLPVTYGHYEVYAPNGDKIVTQLVEIPDEVKRIPNR----------RSEA 169
L W E V++PV+ + V +G ++V QL+ + + RI N R A
Sbjct: 494 SLGWKREEVVRVPVSSENVIVKDASGKEVVFQLLPLSEIALRIRNEYVKAYLGRSPRDTA 553
Query: 170 THELVFIAHLHPLGVKSFYVKRVSTTKRAIANGSYLEWISGEGVRSDGYLDRLNQIADVK 229
H L F A + PLG S+ + T R ++ SY+ SG +NQ +V
Sbjct: 554 KHVLAFTASVPPLGFSSYVISDTGRTARGLS-ASYVT--SGS----------MNQNVEV- 599
Query: 230 DLTNLGLDAIVDEGKEPLWEDANGTGAAFKGTMKKRETDDFKISFAYYPGCLGNNEVPAN 289
+G L G + K + T + S+AYY G G ++ P
Sbjct: 600 -----------GQGNLKLRYSEEGVKITRHLSTKNQVTAEQ--SYAYYIGSNGTDKDP-- 644
Query: 290 RSSGAYIFRPNSTKAIGLNVES-VSEISGDLLSEVRTKIRGNVLSIKRVYKEFDFIEHEW 348
++SGAY+FRP+ I E+ ++ + G L EV ++ + I RVYK + E E+
Sbjct: 645 QASGAYVFRPDGVLPIKSKEEAQLTIVQGPLFDEVHQELNSWISQITRVYKGKNHAEIEF 704
Query: 349 LVGPISVDDGIGKEYVVKYQTDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGN 408
+GPI DDGI KE + K T + NG FYTDSNGR +KR + R W+L + +PV GN
Sbjct: 705 TIGPIPADDGISKEIITKLTTTMKTNGTFYTDSNGRDFIKRIRDFRTDWDLQVYQPVAGN 764
Query: 409 YYPVTNEIYIEN-GERFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNETVL 467
YYP+ IY+++ +VL DR+ GG+SL G++ELMLHRR+ HDD GVGE LNETV
Sbjct: 765 YYPLNLGIYMQDKTSELSVLVDRAVGGSSLENGQIELMLHRRMQHDDIRGVGEILNETVC 824
Query: 468 ----GSGLVVRGKHRILRSKDPVEIAK--SVF--QMHLPPVVFVSDASGLSYEQWMRLEN 519
GL ++GK + K P + AK F +++ P ++ ++ G S+ +
Sbjct: 825 LPEGCKGLTIQGKFYVQIDK-PGDGAKWRRTFGQEIYSPLLIAFTEQEGDSWINSHKTTF 883
Query: 520 CKKFVKTPMPDGLHLLTL-EPWGDQILLRIENYKTGAEDS----TIEIDLQGIFNGIHIK 574
+P + LLTL E ++LLR+ + EDS +++L+ +F+ I+
Sbjct: 884 SAFEPSYSLPKNVALLTLQELENGEVLLRLAHLFEVGEDSEYSVMAKVELKKLFHNKKIR 943
Query: 575 SVKETTLAANQWLDDYDK--WTWNTEGDFYESFNK 607
VKET+L+ NQ + +K W EG E +
Sbjct: 944 EVKETSLSGNQEKAEMEKRRLIWKVEGSAGEEVKR 978
>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein similar
to alpha-mannosidase GI:1419374 from [Homo sapiens]
Length = 1024
Score = 217 bits (529), Expect = 3e-56
Identities = 177/568 (31%), Positives = 283/568 (49%), Gaps = 71/568 (12%)
Query: 113 LQVTVYNPLAWGVREAVKLPVTYGHYEVYAPNGDKIVTQLVEIPDEVKRIPNRRSEA--- 169
L V YNPL W + V+LPV G V+ G ++ +QLV DE + EA
Sbjct: 482 LIVLAYNPLGWKRVDIVRLPVVGGDVSVHDSEGHEVESQLVPFTDEYVALRKYHVEAYLG 541
Query: 170 -------THELVFIAHLHPLGVKSFYVKRVSTTKRAIANGSYLEWISGEGVRSDGYLDRL 222
+ LVF + PLG ++ +ST K+ +G S Y+
Sbjct: 542 QSPTQVPKYWLVFSVTVPPLGFTTY---TISTAKKT------------DGYSSKSYVS-- 584
Query: 223 NQIADVKDLTNLGLDAIVDEGKEPLWEDANGTGAAFKGTMKKRETDDFKISFAYYPGCLG 282
N + + + N+G + + + GT + + T+ K +F+YY G
Sbjct: 585 NILKGEQSIINIGHGHL-----KLSFSTDQGTAINYVNG-RTSMTEPVKQTFSYYSAYNG 638
Query: 283 NNE----VPANRSSGAYIFRPNSTKAIGLNVE-SVSEISGDLLSEVRTKIRGNVLSIKRV 337
+N+ +P N SGAY+FRPN T I + ++ I G L+ EV +I + I RV
Sbjct: 639 SNDKEPLIPQN--SGAYVFRPNGTFPINPEGQVPLTVIHGPLVDEVHQQINPWISQITRV 696
Query: 338 YKEFDFIEHEWLVGPISVDDGIGKEYVVKYQTDIINNGEFYTDSNGRQMLKRKLNARPQW 397
YK + +E E++VG I +DDGIGKE V + + + +N FYTDS+GR +KR + R W
Sbjct: 697 YKGKEHVEVEFIVGNIPIDDGIGKEVVTQISSSLKSNKTFYTDSSGRDYIKRIRDYRSDW 756
Query: 398 NLTLTEPVPGNYYPVTNEIYIENGER-FTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAF 456
L + +P+ GNYYP+ + IY+++ ++ F+V+ DR+ GG+S+V+G+VELMLHRRLL DD+
Sbjct: 757 KLDVNQPIAGNYYPINHGIYLQDSKKEFSVMVDRAFGGSSIVDGQVELMLHRRLLLDDSR 816
Query: 457 GVGEALNETVL----GSGLVVRGK--HRILRSKDPVEIAKSVFQMHLPPVVFV----SDA 506
GV E LNETV +GL ++GK +RI + + ++ Q P++ D
Sbjct: 817 GVAENLNETVCVQDKCTGLTIQGKYYYRIDPYGEGAKWRRTFGQEIYSPLLLAFAQQDDG 876
Query: 507 SGLSYEQWMRLENCKKFVKTPMPDGLHLLTLEPWGD-QILLRIENYKTGAEDSTI----E 561
+S+ + +PD + LLTL+ D +LLR+ + ED +
Sbjct: 877 KPMSFGAASFSGIDPSY---SLPDNVALLTLQELDDGNVLLRLAHLYEVEEDKELSGVAS 933
Query: 562 IDLQGIFNGIHIKSVKETTLAANQWLDDYDK--WTWNTEGDFYESFNKKYGSFEAVNKAV 619
++L+ +F G I + E +L+ANQ +K W EG+ GS+ KA
Sbjct: 934 VELKKLFPGKKIGKLTEMSLSANQERSTMEKKRLVWKVEGE---------GSYGEEKKAK 984
Query: 620 DGPDVREDEGLKIKLKAKEIRSFIADIE 647
G ++ + L+++L EIR+ + +E
Sbjct: 985 RGREI-DPRKLEMELYPMEIRTVLIHLE 1011
Score = 41.1 bits (92), Expect = 0.002
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 2 QHHDAITGTEKQHVAHDYERILSTAIDDAYS 32
QHHDA++GT KQHVA+DY + L+ +A S
Sbjct: 408 QHHDAVSGTSKQHVANDYAKRLAIGYVEAES 438
>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase GI:1419374 from [Homo
sapiens]
Length = 921
Score = 199 bits (486), Expect = 4e-51
Identities = 135/385 (35%), Positives = 206/385 (53%), Gaps = 45/385 (11%)
Query: 113 LQVTVYNPLAWGVREAVKLPVTYGHYEVYAPNGDKIVTQLVEIPDEVKRIPNRRSEA--- 169
L V YNPL W + V+LPV G V+ G ++ +QLV DE + EA
Sbjct: 482 LIVLAYNPLGWKRVDIVRLPVVGGDVSVHDSEGHEVESQLVPFTDEYVALRKYHVEAYLG 541
Query: 170 -------THELVFIAHLHPLGVKSFYVKRVSTTKRAIANGSYLEWISGEGVRSDGYLDRL 222
+ LVF + PLG ++ +ST K+ +G S Y+
Sbjct: 542 QSPTQVPKYWLVFSVTVPPLGFTTY---TISTAKKT------------DGYSSKSYVS-- 584
Query: 223 NQIADVKDLTNLGLDAIVDEGKEPLWEDANGTGAAFKGTMKKRETDDFKISFAYYPGCLG 282
N + + + N+G + + + GT + + T+ K +F+YY G
Sbjct: 585 NILKGEQSIINIGHGHL-----KLSFSTDQGTAINYVNG-RTSMTEPVKQTFSYYSAYNG 638
Query: 283 NNE----VPANRSSGAYIFRPNSTKAIGLNVE-SVSEISGDLLSEVRTKIRGNVLSIKRV 337
+N+ +P N SGAY+FRPN T I + ++ I G L+ EV +I + I RV
Sbjct: 639 SNDKEPLIPQN--SGAYVFRPNGTFPINPEGQVPLTVIHGPLVDEVHQQINPWISQITRV 696
Query: 338 YKEFDFIEHEWLVGPISVDDGIGKEYVVKYQTDIINNGEFYTDSNGRQMLKRKLNARPQW 397
YK + +E E++VG I +DDGIGKE V + + + +N FYTDS+GR +KR + R W
Sbjct: 697 YKGKEHVEVEFIVGNIPIDDGIGKEVVTQISSSLKSNKTFYTDSSGRDYIKRIRDYRSDW 756
Query: 398 NLTLTEPVPGNYYPVTNEIYIENGER-FTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAF 456
L + +P+ GNYYP+ + IY+++ ++ F+V+ DR+ GG+S+V+G+VELMLHRRLL DD+
Sbjct: 757 KLDVNQPIAGNYYPINHGIYLQDSKKEFSVMVDRAFGGSSIVDGQVELMLHRRLLLDDSR 816
Query: 457 GVGEALNETVL----GSGLVVRGKH 477
GV E LNETV +GL ++GK+
Sbjct: 817 GVAENLNETVCVQDKCTGLTIQGKY 841
Score = 41.1 bits (92), Expect = 0.002
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 2 QHHDAITGTEKQHVAHDYERILSTAIDDAYS 32
QHHDA++GT KQHVA+DY + L+ +A S
Sbjct: 408 QHHDAVSGTSKQHVANDYAKRLAIGYVEAES 438
>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein similar
to lysosomal alpha-mannosidase SP:O09159 from [Mus
musculus]
Length = 1047
Score = 191 bits (465), Expect = 1e-48
Identities = 190/645 (29%), Positives = 298/645 (46%), Gaps = 106/645 (16%)
Query: 2 QHHDAITGTEKQHVAHDYERILSTAIDDAYSSPDRPSTYDRLNRTTTFSKAAQGDSGKAP 61
QHHDA+TGT KQHV +DY + L+ +A + + +KA +G K
Sbjct: 417 QHHDAVTGTAKQHVTNDYMKRLALGASEAEAVVNSALA-------CLMNKAPKGGCTKPA 469
Query: 62 LFSYDRCHF-NESRCHTSETSETFMRLRGSESGSVVGRISTKRLDAAYKPAVLQVTVYNP 120
+ +C N S C ++E ET L G +S L + YN
Sbjct: 470 IAFSQQCSLMNISYCPSTE--ET---LPGQKS--------------------LILVAYNS 504
Query: 121 LAWGVREAVKLPVTYGHYEVYAPNGDKIVTQLVEIPDEVKRIPNRRSEA----------T 170
L W E +++PV V +G+ + Q + + + + + ++A
Sbjct: 505 LGWNRTEIIRIPVNDAGLSVEDSSGNTLDAQYIPMDNVTSNLRSFYTKAYLGISSLQRPK 564
Query: 171 HELVFIAHLHPLGVKSFYVKRVSTTKRAIANGSYLEWISGEGVRSDGYLDRLNQIADVKD 230
+ LVF A + PLG +F++ + S A GS S L +N ++
Sbjct: 565 YWLVFKAKVPPLGWNTFFISKAS------AQGS------NNHKHSSVMLSPMNNTTEIGP 612
Query: 231 LTNLGLDAIVDEGKEPLWEDANGTGAAFKGTMKKRETDDFKISFAYYPGCLGNNEVPANR 290
NL + D G+ ++ TGA K D ++ +Y +G+ + P +
Sbjct: 613 -GNLKMVFSSDSGRLERMYNSR-TGADIK-------VDQ---NYFWYASNVGDAKDP--Q 658
Query: 291 SSGAYIFRPNSTKAIGL----------------NVESVSEI-SGDLLSEVRTKIRGNVLS 333
SGAYIFRPN + A + NV+S +I G L+ EV + V
Sbjct: 659 VSGAYIFRPNGSLAYPVSSSKICTVTSAFIGNGNVQSKLQIVRGPLIDEVHQQFSPWVAQ 718
Query: 334 IKRVYKEFDFIEHEWLVGPISVDDG--IGKEYVVKYQTDIINNGEFYTDSNGRQMLKRKL 391
+ R+YKE + E E+ +GPISV G GKE + + TD+ EFYTDSNGR LKR
Sbjct: 719 VVRLYKEKEHAEFEFTIGPISVGKGHLTGKEIITRMVTDMTTAKEFYTDSNGRDFLKRVR 778
Query: 392 NARPQWNLTLTEPVPGNYYPVTNEIYIENGE-RFTVLTDRSQGGTSLVEGEVELMLHRRL 450
+ R W+L + EP+ GNYYP+ +YI++ + +VL DR+ GG S+ +GE+ELMLHRR
Sbjct: 779 DNRTDWHLEVNEPIAGNYYPLNLGMYIKDEKAELSVLVDRATGGASIKDGEIELMLHRRT 838
Query: 451 LHDDAFGVGEALNETV----LGSGLVVRGKHRILRSK--DPVEIAKSVFQMHLPPVVFVS 504
DD+ GV E+L ETV +GL +RG + + +K + + Q P++
Sbjct: 839 SMDDSRGVEESLVETVCVNDTCAGLTIRGNYYVSINKVGEGGRWRRETGQEIYSPLLMA- 897
Query: 505 DASGLSYEQWMRLENCKKFVKT---PMPDGLHLLTLEPWG-DQILLRIENYKTGAEDS-- 558
+ + E+W K + +P + L+TLE +LLR+ + EDS
Sbjct: 898 -FAHENKEKWKASNTVKGYAMDHLYTLPQNIALITLEELDLGNVLLRLAHLYEAGEDSDY 956
Query: 559 --TIEIDLQGIFNGIHIKSVKETTLAANQ-WLDDYDKWTWNTEGD 600
+++L+ +F+G IK V E +L+ANQ + +K W EG+
Sbjct: 957 SKIAKVELKKLFSGKMIKEVTEMSLSANQEKVKMKEKMKWKVEGE 1001
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase II SP:P27046 from [Mus
musculus]
Length = 1173
Score = 83.8 bits (198), Expect = 3e-16
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 22/184 (11%)
Query: 292 SGAYIFRPNS-----TKAIGLNVESVSEISGDLLSEVRTKIRGNVLSIK-RVYK-----E 340
SGAY+F+P+ + G V S + ++ S +TK + LS K R+Y +
Sbjct: 800 SGAYLFKPDGEAQPIVQPDGHVVTSEGLLVQEVFSYPKTKWEKSPLSQKTRLYTGGNTLQ 859
Query: 341 FDFIEHEWLVGPISVDDGIGKEYVVKYQTDIINNGEFYTDSNGRQMLKRKLNARPQWNLT 400
+E E+ V + +D +E +V+Y+TD+ N FY+D NG QM +R+ +
Sbjct: 860 DQVVEIEYHVELLG-NDFDDRELIVRYKTDVDNKKVFYSDLNGFQMSRRETYDKI----- 913
Query: 401 LTEPVPGNYYPVTNEIYIE--NGERFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGV 458
P+ GNYYP+ + +I+ NG+RF+V + +S G SL EG +E+ML RRL+ DD G+
Sbjct: 914 ---PLQGNYYPMPSLAFIQGSNGQRFSVHSRQSLGVASLKEGWLEIMLDRRLVRDDGRGL 970
Query: 459 GEAL 462
G+ +
Sbjct: 971 GQGV 974
Score = 35.5 bits (78), Expect = 0.11
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 2 QHHDAITGTEKQHVAHDYERILSTAIDD 29
QHHD +TGT K +V DY + T++ D
Sbjct: 562 QHHDGVTGTAKDYVVQDYGTRMHTSLQD 589
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
{Arabidopsis thaliana}
Length = 1473
Score = 32.3 bits (70), Expect = 1.0
Identities = 28/140 (20%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 495 MHLPPVVFVSDASGLS--YEQWMRLENCKKFVKTP--MPDGLHLLTLEPWGDQILLRIEN 550
M + P V V+ A G+ + ++ N ++ V + +G ++ ++PW IE
Sbjct: 831 MPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRGFKGTIE- 889
Query: 551 YKTGAEDSTIEIDLQGIFNGIHIKSVKETTLAANQWLDDYDKWTWNTEGDFYESFNKKYG 610
KT +++ + G++ + +++ T L +W DDY + + + D F +
Sbjct: 890 -KTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVK 948
Query: 611 SFEAVNKAVDGPDVREDEGL 630
++ K+VD + +E +
Sbjct: 949 AYND-EKSVDFDLILSEENM 967
>At5g07620.1 68418.m00873 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 359
Score = 31.5 bits (68), Expect = 1.8
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 200 ANGSYLEWISGEGVRSDGYLDRLNQIADVKDLTNLGLDAI-VDEGKEPLWEDANGTGAAF 258
A L+ + EG ++ + ++ ++ D+ +LG+ + + GKEP+ E+A G +
Sbjct: 233 AGQEILDVSAAEGYKAPELI-KMKDVSKESDVYSLGVIMLELVSGKEPINENATGDDEFY 291
Query: 259 KGTMKKRETDDFKISFAYYPGCLGNNE 285
+ D ++S Y P LG+++
Sbjct: 292 LPDFMRNAVLDHRLSDLYRPEILGSDD 318
>At3g32280.1 68416.m04116 hypothetical protein
Length = 474
Score = 29.9 bits (64), Expect = 5.5
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 193 STTKRAIANGSYLEWISGEGVRSDGYLDRLNQIADVKDLTNLGLDAIVDEGK 244
S+ K I GS SG+G+ +D YLD +N++ +V+ ++ ++ + D+GK
Sbjct: 170 SSLKHVIIGGSSGGSNSGKGLANDLYLD-VNELVEVQVRSDKEINMMKDKGK 220
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 495 MHLPPVVFVSDASGLSYEQWMRLENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTG 554
+ L V +S A+ L +++ + +FV DG +T+E GD L + +++ G
Sbjct: 6 LELEKVRLISLATKLGFDEDSAKKCLDRFVDLYGDDGRDFITVELCGDDFLAALADFEEG 65
Query: 555 AED----STIEIDLQG 566
E+ IE + QG
Sbjct: 66 TEEWDDIQAIESEAQG 81
>At5g51770.1 68418.m06419 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 654
Score = 29.5 bits (63), Expect = 7.3
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 309 VESVSEISGDLLSEVRTKI--RGNVLSIKRVYKEFDFIEHEWLVGPISVDDGIGKEYVVK 366
VE V S + + V ++ +G+VL + V + D+ W +V G GKEYV++
Sbjct: 299 VEQVPMTSPETVVSVSPEMGEKGSVLEVGNVVRSKDW----WWKQEGNVGRGKGKEYVMQ 354
Query: 367 YQTDIINNGEFYTD------SNGRQMLKRKLNARPQWNLTLTE 403
+ + +D G+++ K+K + R +W L+L E
Sbjct: 355 WIGSEVKEERQSSDWIAETAEGGKKVEKKKSSKRLEWWLSLDE 397
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 29.5 bits (63), Expect = 7.3
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 262 MKKRETDDFK--ISFAYYPGCLGNNEVP-----ANRSSGAYIFRPNSTKAIGLNVESVSE 314
M KRE DD + + PG N+ P ++SG F ++ L +
Sbjct: 1557 MDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQT 1616
Query: 315 ISGDLLSEVRTKIRGNVLSIKRVYKEFD--FIEHEWLVGPISV 355
+ G LL RT +RG+ + Y + + F +HE + PI V
Sbjct: 1617 VRGTLLIPCRTAMRGS-FPLNGTYFQVNELFADHESSLKPIDV 1658
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 29.5 bits (63), Expect = 7.3
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 459 GEALNETVLGSGL-VVRGKHRILRSKDPVEIAKSVFQMHLPPVVFVSDASGLSYEQWMRL 517
G AL+ + + V+ H +R KDP E ++SV + +V L Y W+
Sbjct: 115 GHALHRSKTAPAMAVINDLHHPIRQKDPTETSRSVVRQAFALLVVYLSLGVLIY--WLNR 172
Query: 518 ENCKKFVKTPMPDGLH 533
++ P+ DGL+
Sbjct: 173 DHYVVNQTHPVVDGLY 188
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 29.5 bits (63), Expect = 7.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 229 KDLTNLGLDAIVDEGKEPLWEDANGTGAAFKGTMKKRETDDFKISFAYYPGCLG 282
KD T L ++ DE ++P A T A+ K ++ DFKIS + C+G
Sbjct: 826 KDSTATKLFSLFDESRQPF--PAKNTSASELKEKKAGDSSDFKISDSSRGSCVG 877
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 29.1 bits (62), Expect = 9.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 136 GHYEVYAPNGDKIVTQLVEIPDEVKRIPNRRSEATH 171
G YE P GDK+V+ +++ P+ +++ ++ E H
Sbjct: 480 GIYEHVIPEGDKMVSWVLDCPEMDEKLVSQMGEGVH 515
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,234,346
Number of Sequences: 28952
Number of extensions: 738089
Number of successful extensions: 1735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 24
length of query: 650
length of database: 12,070,560
effective HSP length: 86
effective length of query: 564
effective length of database: 9,580,688
effective search space: 5403508032
effective search space used: 5403508032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -