GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001695-TA|BGIBMGA001695-PA|IPR011682|Glycosyl hydrolases
38, C-terminal, IPR011013|Galactose mutarotase-like
         (650 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    28   0.17 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   3.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   5.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   6.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   8.7  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 0.17
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 573 IKSVKETTLAANQWLDDYDKWTWNTEGDFYESFNKKY-GSFEAVNKAVDGPDVREDE 628
           + SV +TTL     L DYD     T   F E  N ++  + + V K ++  D+ +D+
Sbjct: 101 LSSVHKTTLTIENLLADYDFSETLTRAKFEELNNDQFLKTLKPVKKVLEDADMTKDQ 157


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 593 WTWNTEGDFYESFNKKYGSFEAVNKAV 619
           W+  T+ D +E   +K G  +AVNKA+
Sbjct: 350 WSIETD-DMHEFCGEKNGLLKAVNKAI 375


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 132 PVTYGHYEVYAPNGDKIVTQLVEI 155
           P TY  + V APNGD +++ + EI
Sbjct: 509 PNTYNRHLV-APNGDHVISLIDEI 531


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 102 KRLDAAYKPAVLQVTVYNPLAWGVREAVKLPVTYGHYEVYAPNGDKIVTQLVE 154
           KR+   Y+       +Y  L WGV++  +  ++ G    YA    +  + L+E
Sbjct: 233 KRIPHDYRKRFRMEKIYVALVWGVKDQAEFTLS-GQVMKYAALATENFSSLLE 284


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 557 DSTIEIDLQGIFNGIHIKSV 576
           DS  EIDL G+ N  ++KSV
Sbjct: 73  DSWNEIDLHGLENVANLKSV 92


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 132 PVTYGHYEVYAPNG 145
           P++ G Y+ Y+PNG
Sbjct: 138 PMSSGSYDPYSPNG 151


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,297
Number of Sequences: 317
Number of extensions: 6952
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 650
length of database: 114,650
effective HSP length: 61
effective length of query: 589
effective length of database: 95,313
effective search space: 56139357
effective search space used: 56139357
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)