GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001695-TA|BGIBMGA001695-PA|IPR011682|Glycosyl hydrolases
38, C-terminal, IPR011013|Galactose mutarotase-like
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    31   0.50 
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   4.7  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   6.2  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   8.1  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   8.1  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   8.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   8.1  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 23/103 (22%), Positives = 42/103 (40%)

Query: 107 AYKPAVLQVTVYNPLAWGVREAVKLPVTYGHYEVYAPNGDKIVTQLVEIPDEVKRIPNRR 166
           +++ A   V++   L     +  K P+     E     G  + TQ   +   ++      
Sbjct: 491 SFQNANQTVSICGSLPEPAEKLTKAPLWVNVPETEIAVGMPLTTQYTSVGSNLQSSDLSA 550

Query: 167 SEATHELVFIAHLHPLGVKSFYVKRVSTTKRAIANGSYLEWIS 209
            E T EL + A  +   ++   V   S   R I+NG YL++I+
Sbjct: 551 HENTDELFYFAWDNEKPMRKKLVSSFSIANRPISNGEYLDFIN 593


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 285 EVPANRSSGAYIFRPNSTKAIGLNVESVSEISGDLLSEVRTKIRGNVLSIKRVYKEFDFI 344
           +V AN  SG + F  ++  A+ LN E +S  +  + SE   K++ +  S  + +K   + 
Sbjct: 3   KVSANNQSGFFKFYIDT--ALLLNAEFISSFTNCINSEYNGKVKISYSSSSQQFKVIVYE 60

Query: 345 EHE 347
           EH+
Sbjct: 61  EHK 63


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 243 GKEPLWEDANGTGAAFKGTMKKRETDDFKISFAYYPGCLGNNEVPANRSSGAYIFRPNST 302
           GKE   ED  G+ A  K   +K    + +++        G  ++    +SG ++  P+  
Sbjct: 32  GKEMCEEDVIGSMAYAKALCQKNVISEEELNSILK----GLEQIQREWNSGQFVLEPSDE 87

Query: 303 KAIGLNVESVSEISGDLLSEVRT 325
                N   ++EI GD+  ++ T
Sbjct: 88  DVHTANERRLTEIIGDVAGKLHT 110


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 561 EIDLQGIFNGIHIKSVKETTLAANQWL 587
           EI   G++NG+ ++ V   TL   QWL
Sbjct: 269 EIGFSGLWNGLGVRIVMIGTLTGAQWL 295


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 363 YVVKYQTDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYIENGE 422
           Y V   T ++  G  + D     +L    + + QW     +P+   ++P+  E +IE  +
Sbjct: 531 YQVGSDTSVLRYGLSFWDPKWDYLLADNQH-KQQWQAPSYKPLISEFFPMGIEHFIETAQ 589

Query: 423 RFTVLTDRS 431
              +  +RS
Sbjct: 590 SIVMAVNRS 598


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 450 LLHDDAFGVGEALNETVLGSGLVVRGKHRILRSKDPVEIAKSVFQMHLPPVVFVS-DASG 508
           L+ D+   V E  N   LGS  V +GK  I   K  + + + +F+  +    F+  D+  
Sbjct: 25  LIADELNFVSEPTNLDHLGSPFVEKGKSVIPYEKSQIPVLRFIFKRFILTFPFLDPDSQN 84

Query: 509 LSYEQWMR--LENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKT 553
             +    R  L++  K   + +PD      L  W    LL+ +N  T
Sbjct: 85  QLWNVNFRNLLKSLSKSNVSVLPDDSDATHLHKW----LLKFQNMLT 127


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 19  YERILSTAID-DAYSSPDRPSTYDRLNRTTTFSKAAQGDSGKAPLFSYDRCHFNESRCHT 77
           Y  IL    D DAY SP+RPS+ +        + +A    G + +F Y+R H   S+ H 
Sbjct: 61  YSDILEEEPDEDAYDSPERPSSTEEFISQDESNISA----GSSFMFPYNRGH-PLSKRHD 115

Query: 78  SETSETFMRLRGSESGSVVGRISTKRLDAAY 108
           S   + F      E  S+         DA Y
Sbjct: 116 SIMVDEFGHEYIVEGDSIASADEAIDYDALY 146


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,956
Number of Sequences: 5004
Number of extensions: 138664
Number of successful extensions: 332
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 8
length of query: 650
length of database: 2,362,478
effective HSP length: 77
effective length of query: 573
effective length of database: 1,977,170
effective search space: 1132918410
effective search space used: 1132918410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)