Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001694-TA|BGIBMGA001694-PA|undefined
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.044
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 35 0.18
At4g00315.1 68417.m00040 F-box family protein contains F-box dom... 33 0.41
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 31 2.2
At2g31150.1 68415.m03803 expressed protein 31 2.2
At1g67230.1 68414.m07652 expressed protein 31 2.2
At1g55660.1 68414.m06371 F-box family protein contains F-box dom... 31 2.2
At5g52280.1 68418.m06488 protein transport protein-related low s... 31 2.9
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 31 2.9
At1g66230.1 68414.m07517 myb family transcription factor (MYB20)... 30 3.8
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 30 5.0
At3g28770.1 68416.m03591 expressed protein 30 5.0
At1g77340.1 68414.m09007 pentatricopeptide (PPR) repeat-containi... 30 5.0
At5g12930.1 68418.m01483 expressed protein 29 6.6
At1g53590.1 68414.m06088 C2 domain-containing protein 29 6.6
At4g26780.1 68417.m03857 co-chaperone grpE family protein simila... 29 8.7
At2g42150.1 68415.m05217 DNA-binding bromodomain-containing prot... 29 8.7
At2g40440.1 68415.m04990 BTB/POZ domain-containing protein conta... 29 8.7
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 29 8.7
At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containi... 29 8.7
At1g30470.1 68414.m03724 SIT4 phosphatase-associated family prot... 29 8.7
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-... 29 8.7
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 36.7 bits (81), Expect = 0.044
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 464 QAHSIQINCEADEFESKNILTFHCPACNISEVDEECLLKHILSQKHCEKIHFLYKTAYIK 523
Q H IN E F S+ + C CN + E+ H+ +KH EK + + Y K
Sbjct: 70 QKHDFDINAEL--FNSQ----WFCSLCNATMTCEQDYFAHVYGKKHQEKANEVADMDYSK 123
Query: 524 KCVASGKEIMPSTVLNPMTLYRDGNKIV-CFGDAMYACTLCFENLIVGESVLMAHCYDKN 582
+ + P+ N +T D + V D + C+LC N E L+AH K
Sbjct: 124 Q-----QSEHPAVDKNNLTQQPDLDIYVGLSNDYPWFCSLCDIN-ATSEQTLLAHANGKK 177
Query: 583 H 583
H
Sbjct: 178 H 178
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 34.7 bits (76), Expect = 0.18
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
Query: 16 AKTNEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKR 75
AK + S + ++ ++ + A K+ AA +G + K S + S ++
Sbjct: 77 AKKVPAKKAASSSDESSDDSSSDDEPAPKKAVAATNGTVAKKSKDDSSS---SDDDSSDE 133
Query: 76 KIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDS 135
++ K A ++ ++++DD S++E+ P K K A+ + + DS
Sbjct: 134 EVAVTKKPAAAAKNGSVKAKKESSSEDD-SSSEDEPAKKPA-AKIAKPAAKDSSSSDDDS 191
Query: 136 SFDLPDSPTDSSSRTEEIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSESTSVSP 195
D D + + E ++ K +K + DT + S S
Sbjct: 192 DEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESEDEKPAQK---KADTKASKKSSSD 248
Query: 196 EPFEDLEDKNEEE 208
E E ED++E+E
Sbjct: 249 ESSESEEDESEDE 261
Score = 29.1 bits (62), Expect = 8.7
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 16 AKTNEDRAKGSLTSRRRHNTQAEPDG-ALKETTAADHGNIITKKGSHSDTDILSANEQKK 74
AK + AK S +S + +E + A K+ A + S D+D S +E+
Sbjct: 174 AKIAKPAAKDSSSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESEDEKPA 233
Query: 75 RKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAE 122
+K K K +S + S +D+ + E TPK K D + +
Sbjct: 234 QKKADTKASKKSSSDESSES-----EEDESEDEEETPKKKSSDVEMVD 276
>At4g00315.1 68417.m00040 F-box family protein contains F-box domain
Pfam:PF00646
Length = 441
Score = 33.5 bits (73), Expect = 0.41
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 182 QEPDTDSESTSVSPEPFEDLEDKNEEERISLLLNYQ 217
QE D+D+ES S SP F D ED + E +L +Q
Sbjct: 239 QESDSDNESDSDSPRYFYDFEDMPKLEEADFVLTFQ 274
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 31.1 bits (67), Expect = 2.2
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 363 GTESEKEELSVSMHNAGHLFSESDSSECNCKCHYSPSDSG---LTSKDTNQSITSSIG-N 418
GT+S+KE+ S+ +H G + E K PS SG L S N S + +
Sbjct: 819 GTKSKKEKKSLDLHPGGSIDGSMKMKE--TKGRVQPSSSGTSQLQSMAKNDRSGSKVDLS 876
Query: 419 FTMDSNTLSAYSESLDMIVSYNSFDDSTLSILQQKTAIERITFYVQAHSIQINC--EADE 476
T++ E++ + + S +++ ++ A+++I+ V A+ N +A+E
Sbjct: 877 DAPMKGTVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDAEE 936
Query: 477 FESKNILTFHCPACNISEVDEE 498
ESK + A + S D +
Sbjct: 937 DESKTTTSDSTKAPSDSSSDND 958
>At2g31150.1 68415.m03803 expressed protein
Length = 309
Score = 31.1 bits (67), Expect = 2.2
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 77 IRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDC-KSAEVFSFRLKRFNFDS 135
+RK + K S S DDD S +N + K F +F
Sbjct: 118 LRKHSGEQSKKQVSNFNSEKQLQRDDDASERQNHSSSRFDSRNKDHNATPFTRPASSFKR 177
Query: 136 SFDLPDSPTDSSSRTEEIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSESTSVSP 195
+ +P + +S +E I + +K +V+ + E EP+ +S + P
Sbjct: 178 NSPVPRHKSQASYSSEAIFD---EASSYSVTWTQKKDQVESRDEPEYEPEPESAAEYDEP 234
Query: 196 EPFEDLEDKNEEERISLLLNYQMRLE 221
EP + E ++E E L +++LE
Sbjct: 235 EPEAEYEPESEPELAILESVSELKLE 260
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 31.1 bits (67), Expect = 2.2
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 201 LEDKNEEERISLLLNYQMRLEKLECFLQKLLNEFQFHIEVSKIFNAKSIVTAPSGTDVTR 260
L K E ER LL + +MR KLE +Q +L E + ++ K + S + R
Sbjct: 596 LSKKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEEEREKELSNINYLR 655
Query: 261 IPKILGQVTHADNTTRGVSPSWNIIVEKEDSSSKNKLKQQLLAMKETIDTFINL 314
++ N + + + E SSKN L++Q +++ +D + L
Sbjct: 656 -DVARREMMDMQNERQRIEKE-----KLEVDSSKNHLEEQQTEIRKDVDDLVAL 703
>At1g55660.1 68414.m06371 F-box family protein contains F-box domain
Pfam:PF00646
Length = 492
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 183 EPDTDSESTSVSPEPFEDLEDKNEEERISLLLNYQ 217
E D+D ES S SP F D ED + E +L +Q
Sbjct: 291 ESDSDDESDSDSPRYFYDFEDMPKLEEADFVLTFQ 325
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 70 NEQKKRKIRKLKLDVKKASQSMTRSLDF---TNNDDDGSNAENTPK--HKLLDCKS 120
N++ ++++ LK+D+++ + MT+ LD + ++G EN K +L CK+
Sbjct: 752 NDELRKQVSNLKVDIRRKEEEMTKILDARMEARSQENGHKEENLSKLSDELAYCKN 807
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 30.7 bits (66), Expect = 2.9
Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 11/198 (5%)
Query: 10 SNITYFAKTN-EDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILS 68
SN T +++ D + S S T+ E D K ++ + + K+ ++ D S
Sbjct: 267 SNATETTESSGSDESGSSGKSTGYQQTKNEEDEKEKVQSSEEESKV--KESGKNEKDASS 324
Query: 69 ANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRL 128
+ ++ K + + K + +SQ + + + + S+++ K + + K E S +
Sbjct: 325 SQDESKEEKPERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEASSSQE 384
Query: 129 KRFNFDSSFDLPDSPTDSSSRTEEIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDS 188
+ N ++ + SS E E K+ +K+EQ TDS
Sbjct: 385 E--NEIKETEIKEKEESSSQEGNENKE-----TEKKSSESQRKENTNSEKKIEQVESTDS 437
Query: 189 ESTSVSPEPFEDLEDKNE 206
+T E D E K E
Sbjct: 438 SNTQKGDEQKTD-ESKRE 454
>At1g66230.1 68414.m07517 myb family transcription factor (MYB20)
similar to myb-related transcription factor GI:1430846
from [Lycopersicon esculentum]; contains PFAM profile:
Myb DNA binding domain PF00249
Length = 282
Score = 30.3 bits (65), Expect = 3.8
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 12/157 (7%)
Query: 285 IVEKEDSSSKNKLKQQLLAMKETIDTFINLYLDHRRKGLTVLRKSYRIQRGXXXXXXXXX 344
IVEKED KL+ + +ET++ L++ K ++ L +S G
Sbjct: 131 IVEKEDEEPLKKLQNNTVPFQETMER----PLENNIKNISRLEESL----GDDQFMEINL 182
Query: 345 XXXHYDFPDLREAMINLFGTESEKEELSVSMHNAGHLFSESDSSECNCKCHYSPSDSGLT 404
D P + ++L + S +S S + H ++S + + SD G +
Sbjct: 183 EYGVEDVPLIETESLDLICSNS---TMSSSTSTSSHSSNDSSFLKDLQFPEFEWSDYGNS 239
Query: 405 SKDTNQSITSSIGNFTMDSNTLSAYSESLDMIVSYNS 441
+ D N + + I N M +S +S SLD++++ S
Sbjct: 240 NNDNNNGVDNIIENNMMSLWEISDFS-SLDLLLNDES 275
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 266 GQVTHADNTTRGVSPSWNIIVEKEDSSSKNKLKQQLLAMKETIDTFINLYLDHRRKG 322
GQ HAD + +W K ++S +L + M E ++ NL L ++ G
Sbjct: 3027 GQFDHADRLFNSIRETWLSAAGKGNTSDVKELIPEFFYMPEFLENRFNLDLGEKQSG 3083
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.9 bits (64), Expect = 5.0
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 14/155 (9%)
Query: 57 KKGSHSDT-DILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKL 115
K+G+ + D ++ + ++K K +K K KK S++ + ++D N K
Sbjct: 922 KEGNKEENKDTINTSSKQKGKDKKKK---KKESKNS----NMKKKEEDKKEYVNNELKKQ 974
Query: 116 LDCKSAEVFS--FRLKRFNFDSSFDLPDSPTDSSSRTEEIVEIXXXXXXXXXXXXXEKKE 173
D K S +LK N D+ + +S DS+S+ E E EKK
Sbjct: 975 EDNKKETTKSENSKLKEENKDNK-EKKESE-DSASKNREKKEYEEKKSKTKEEAKKEKK- 1031
Query: 174 VKMCRKVEQEPDTDSESTSVSPEPFEDLEDKNEEE 208
K K +E D++ + E DL+ K +EE
Sbjct: 1032 -KSQDKKREEKDSEERKSKKEKEESRDLKAKKKEE 1065
>At1g77340.1 68414.m09007 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 441
Score = 29.9 bits (64), Expect = 5.0
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 403 LTSKDTNQSITSSIGNFTMDSNTLSAYSESLDMIVSYNSFDDSTLSILQQKTA-IERITF 461
LT K N ++ SS+ F + Y+E L+ +VS + + +TL K +
Sbjct: 118 LTPKCYN-NLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQ 176
Query: 462 YVQAHSIQINCEADEFESKNILTFHCPACNISEVDEECLLKHILSQKHCEKIHFLY 517
YV IQ C+ D F + +T H C EVD + ++Q C + Y
Sbjct: 177 YV-TWLIQAGCDPDYFTYTSFITGH---CRRKEVDAAFKVFKEMTQNGCHRNEVSY 228
>At5g12930.1 68418.m01483 expressed protein
Length = 439
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 10 SNITYFAKTNEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSA 69
S++T A+T+ D E D +K+ T+ + K GS +T++
Sbjct: 218 SSVTSAAETHFDSLSLDQDMLSLRKECQEKDATIKDLTS--FLQLTNKAGSKRETELEEI 275
Query: 70 NEQKKRKIRKLKLDVKKASQSMTR 93
+KK I+KLK DV +T+
Sbjct: 276 ISRKKTIIKKLKRDVLVLEDKVTQ 299
>At1g53590.1 68414.m06088 C2 domain-containing protein
Length = 751
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 40 DGALKETTAADHGNIITKKGSHSDT--DILSANEQKKRKIRKLKLDVKKASQSMTRSLDF 97
DG ++ T DH + T + D+ DIL + + K KLK + ++ M +++
Sbjct: 668 DGNIERTGDDDHVDSTTLATAKEDSSGDILEDSTDVEAKEEKLKEAAESETRDMDTAMNI 727
Query: 98 TNNDDDGSNAEN 109
D+ G +N
Sbjct: 728 KTEDEKGDTLKN 739
>At4g26780.1 68417.m03857 co-chaperone grpE family protein similar
to chaperone GrpE type 2 [Nicotiana tabacum] GI:3851640;
contains Pfam profile PF01025: co-chaperone GrpE
Length = 327
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 113 HKLLDCKSAEVFSFRLKRFNFDSS----FDLPDSPTDSSSRTEE 152
HKL+ + + + SF L+RFNF SS D + T++S +EE
Sbjct: 47 HKLVPAQMSMMDSFALQRFNFSSSTSPESDEKKTHTEASKTSEE 90
>At2g42150.1 68415.m05217 DNA-binding bromodomain-containing protein
contains Pfam domains, PF00439: Bromodomain and PF00249:
Myb-like DNA-binding domain
Length = 631
Score = 29.1 bits (62), Expect = 8.7
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 17 KTNEDRAKGSLTSRR----RHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQ 72
KT+E++ GS R R D LK ++AAD G+ + + +
Sbjct: 505 KTDEEKKGGSKKKRAASFLRRMKVGSSDDTLKRSSAADSSTTGKGGGAEQRKNNSNKADN 564
Query: 73 KKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENT 110
KK I K++ KKAS + RS + N++ + + + ++
Sbjct: 565 KKTPIPKIRQTNKKAS-PVKRSNNGRNSEREAAPSSSS 601
>At2g40440.1 68415.m04990 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain;
Length = 194
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 102 DDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTEEIVEIXXXXX 161
D G +T HKL+ +EVF L+ +S L ++ T + EE+
Sbjct: 32 DSGDEGASTSAHKLVLSARSEVFKKMLESDEIKASAQL-ETITLCEMKHEELEAFIEFIY 90
Query: 162 XXXXXXXXEKKEVKMCRKVE 181
++K+ KM K+E
Sbjct: 91 SDGSMLSAKEKQHKMANKIE 110
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 179 KVEQEPDTDSESTSVSPEPFEDLEDKNEEERISLLLNYQMRLEKLECFLQKLLN 232
K ++ E + E F D E++NEEE I L+ +E+L LQ+ LN
Sbjct: 324 KNHEQSKKHKEKVAELRESFTDYEEENEEEEIDGPLDSPESVEELHEKLQEELN 377
>At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1006
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 57 KKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSN--AENTPKHK 114
++GS D L A E++ ++ + +++ + S TR + NDDD + A TP +
Sbjct: 355 ERGSKGDGLDLLAEERRIERLANERHEIRSSKLSGTRRIGAKRNDDDDDSLFAMETPAFR 414
Query: 115 LLD 117
D
Sbjct: 415 FSD 417
>At1g30470.1 68414.m03724 SIT4 phosphatase-associated family protein
contains similarity to copper chaperone homolog CCH
GB:AAF15286 GI:6525011 from [Glycine max]; contains Pfam
profile PF04499: SIT4 phosphatase-associated protein
Length = 811
Score = 29.1 bits (62), Expect = 8.7
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 422 DSNTLSAYSESLDMIVSYNSFDDSTLSILQQKTAIERITFYVQAHSIQINCEADEFESKN 481
DS TL + ++I + + L+ L++K +E++ Y+ I ++ E K
Sbjct: 21 DSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIRYI------IEEPLEDVEKKR 74
Query: 482 ILTFHCPACNISEVDEECLLKHILSQKHCEKIHFLYKTA 520
F AC I + E +LK ++ + + F + A
Sbjct: 75 TFKFPFIACEIFTCEIEMILKTLVEDEELMLLLFSFLEA 113
>At1g22670.1 68414.m02833 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 422
Score = 29.1 bits (62), Expect = 8.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 558 YACTLCFENLIVGESVLMAHCYDKNHV 584
++C +C E+ IVG+ + + C K HV
Sbjct: 230 FSCAICLEDYIVGDKLRVLPCSHKFHV 256
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.129 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,203
Number of Sequences: 28952
Number of extensions: 569750
Number of successful extensions: 2225
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2203
Number of HSP's gapped (non-prelim): 45
length of query: 595
length of database: 12,070,560
effective HSP length: 85
effective length of query: 510
effective length of database: 9,609,640
effective search space: 4900916400
effective search space used: 4900916400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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