Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001693-TA|BGIBMGA001693-PA|IPR001810|Cyclin-like F-box,
IPR013101|Leucine-rich repeat 2, IPR001611|Leucine-rich repeat,
IPR006553|Leucine-rich repeat, cysteine-containing subtype
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 48 3e-06
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 47 4e-06
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 39 0.001
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 34 0.032
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 33 0.056
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 33 0.098
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.52
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 29 0.92
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy... 29 1.6
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc... 29 1.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 1.6
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 28 2.8
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 47.6 bits (108), Expect = 3e-06
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 17/230 (7%)
Query: 140 DEMILSVFRWLPKRTLAHCMLVCKRWYRIASDETLWQRLDLGNKAIARDALGKILDRKPV 199
+E+ ++ +L L VC W TLW+++ N+A + + K V
Sbjct: 5 NEVCFNILSYLEADELRCKSTVCTSWRNFIIP-TLWEKVVFQNEAQLNNFFDTLQYSKDV 63
Query: 200 IVRLASSELETLDRLLENCPGLKKLSLESVNVADTTCAILGRCTNLETLNMTMAQGITAE 259
S L +L NC ++K + D ++ T + LN++ I+
Sbjct: 64 -----SYYFRYLRKL--NCSRVRKF------LTDKHLMLMTLATGISRLNLSGCTRISEP 110
Query: 260 GSRALLEGCVNLQSLNISWC-NLSEAALQVLVDMLPRRLQRLNLGGARIMTDELTERLCA 318
LL +NL ++N S +L L+ + D P L+ LN+G ++ D ++
Sbjct: 111 LIGKLLYQNLNLVTINFSNIFSLPANILEYISDNCPN-LKALNIGNCGLVEDTGMVQIIK 169
Query: 319 RCPRLAELDLSDCSRLTPRALQSLVTLGRLEHAALSRCY-MLSGHTLSKL 367
RCP L L + +C +LT +LQ L L +S C + TLS+L
Sbjct: 170 RCPYLNRLIIPNCRKLTDVSLQILSEKEDLIELDISGCEGFHNADTLSRL 219
Score = 46.8 bits (106), Expect = 6e-06
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 11/202 (5%)
Query: 177 RLDLGNKAIARDALGKILDRKPVIVRLASSELE------TLDRLLENCPGLKKLSLESVN 230
RL + N D +IL K ++ L S E TL RL+ GLK+LS++
Sbjct: 176 RLIIPNCRKLTDVSLQILSEKEDLIELDISGCEGFHNADTLSRLVSRNRGLKELSMDGCT 235
Query: 231 VADTTCAILGRCTNLETLNMTMAQGIT-AEGSRALLEGCV--NLQSLNISWC-NLSEAAL 286
L L+ + + + S L C L SL +S C L++++L
Sbjct: 236 ELSHFITFLNLNCELDAMRALSLNNLPDLKDSDIELITCKFSKLNSLFLSKCIGLTDSSL 295
Query: 287 QVLVDMLPRRLQRLNLGGARIMTDELTERLCARCPRLAELDLSDCSRLTPRALQSLVTLG 346
L L + L L+LG +TD + L C + +D C RL+ A+ ++ L
Sbjct: 296 LSLTK-LSQSLTTLHLGHCYEITDIGVQCLLKSCKNITYIDFGGCLRLSDIAVSAIAKLP 354
Query: 347 RLEHAALSRCYMLSGHTLSKLS 368
L+ L +C L+ ++ LS
Sbjct: 355 YLQRVGLVKCICLTDLSVILLS 376
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 244 NLETLNMTMAQGITAEGSRALLEGCVNLQSLNISWCN 280
NLE ++++ G+TA+ L+ C L+ L+++ N
Sbjct: 382 NLERVHLSYCIGLTAKSVSYLMYNCKTLKHLSVTGIN 418
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 47.2 bits (107), Expect = 4e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 204 ASSELETLDRLLENCPGLKKLSLESVNVADTTCA-ILGRCTNLETLNMTMAQGITAEGS- 261
A + ++ +++ CP L L+L + D C +L C NL +L + GI +GS
Sbjct: 331 ARIHVSVINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRNLVSLKIESPGGIINDGSI 390
Query: 262 -RALLEGCVNLQSLNISWCN-LSEAALQVLVDMLPRRLQRLNLGGARIMTDE 311
L + L +L++S C L++ L+ + RL+ LNL G ++TD+
Sbjct: 391 LDVLNQIGSGLHTLSLSGCTKLTDEVLKQGIGPCCGRLKHLNLSGLELLTDD 442
Score = 35.9 bits (79), Expect = 0.011
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 256 ITAEGSRALLEGCVNLQSLNISWC-NLSEAALQVLVDMLPRRLQRLNLGGARIMTDELTE 314
ITA+ + + C NLQ+L++++C + + L D L G + + E
Sbjct: 254 ITADSLFQIAQYCPNLQTLHLTYCGQMQDQVLHFYADHLTELTDVSFQGAFLVSSSEWIN 313
Query: 315 RLCARCPRLAELDLSDCSRLTPRALQSLV-TLGRLEHAALSRCYMLSGHTLSKLSAMPSL 373
R +L L+L+D +R+ + ++V L LSR + L + L+ +L
Sbjct: 314 FFKKRGSKLISLELTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRNL 373
Query: 374 RYLEV 378
L++
Sbjct: 374 VSLKI 378
Score = 33.5 bits (73), Expect = 0.056
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 241 RCTNLETLNMTMAQGITAEGSRALLEGCVNLQSLNISWC-NLSEAALQVLVDMLPRRLQR 299
R + L +L +T I A+++ C NL SLN+S L + +++L +
Sbjct: 318 RGSKLISLELTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRNLVSLK 377
Query: 300 LNLGGARIMTDELTERLCARCPRLAELDLSDCSRLTPRALQSLV--TLGRLEHAALSRCY 357
+ G I + + L L L LS C++LT L+ + GRL+H LS
Sbjct: 378 IESPGGIINDGSILDVLNQIGSGLHTLSLSGCTKLTDEVLKQGIGPCCGRLKHLNLSGLE 437
Query: 358 MLS 360
+L+
Sbjct: 438 LLT 440
Score = 27.5 bits (58), Expect = 3.7
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 218 CPGLKKLSLESVNVA--DTTCAILGRC---TNLETLNMTMAQGITAEGSRALLEGCVN-L 271
C LK L+L + + D + G + LETL++ + + RA+L + L
Sbjct: 425 CGRLKHLNLSGLELLTDDEASIVFGEWKIQSGLETLSLRRCLSLGDKTVRAVLVNSGHTL 484
Query: 272 QSLNISWCN-LSEAALQVLVDMLPRRLQRLNLGGARIMTDELTERLCARCPRLAEL 326
++L+++ + +++ ALQ +V+ L+ L++ R M D+L ++ P L +L
Sbjct: 485 RTLDLNGMSFVTDEALQYIVNFPLPMLKALDVSWIRGMNDKLVCDFESKKPTLEKL 540
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 133 DSFSVLSDEMILSVFRWLPKRTLAHCMLVCKRWYRIASDETLWQRL 178
D V +E+ L VF +L + L C L+ KRW R+ D +W+ L
Sbjct: 71 DFTEVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKAL 116
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 34.3 bits (75), Expect = 0.032
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 133 DSFSVLSDEMILSVFRWLPKRTLAHCMLVCKRWYRIASDETLWQRL 178
D S+L E+ + +L R+L V K W +A D+ +W R+
Sbjct: 108 DFLSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADDDVIWHRM 153
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 33.5 bits (73), Expect = 0.056
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 138 LSDEMILSVFRWLPKRTLAHCMLVCKRWYRIASDETLWQ 176
L E+++ +F +L R+L CK W ++ SD+ W+
Sbjct: 34 LPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWR 72
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 32.7 bits (71), Expect = 0.098
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 133 DSFSVLSDEMILSVFRWLPKRTLAHCMLVCKRW 165
D F +L E++L + + L +++ CM VCK W
Sbjct: 134 DLFRILPREVLLCILQQLNFKSIVQCMQVCKHW 166
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 320 CPRLAELDLSDCSRLTPRALQSLVTLGRLEHAAL-SRCYMLSGHTLSKLSAMPSLRYL 376
C +L +L L D L P + +L LEH + + + H + P+L+Y+
Sbjct: 451 CYKLKKLVLHDSLALAPHFFEIFASLPELEHLEIPDNVALQNKHAIHITDCCPNLKYV 508
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 30.3 bits (65), Expect = 0.52
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 265 LEGCVNLQSLNISWCNLSEAALQVLVDMLPRRLQRLNLGGARIMTDELTERLCARCPRLA 324
LE C+ S + AL VLV +L R L + + R +T +T+ LC P
Sbjct: 232 LEACIKDLSATTFVATVESVALAVLVPILKRALAQRSQSMLR-LTVIITDNLCKLVP--- 287
Query: 325 ELDLSDCSRLTPRALQSLVTLGRLEHAALSRCYMLSGHTLSKLS 368
D ++ S P + + + + AA+ L+ H L+ L+
Sbjct: 288 --DPAEASDFLPELIPDVERIA--QTAAMPEVRALASHALTTLN 327
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 29.5 bits (63), Expect = 0.92
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 135 FSVLSDEMILSVFRWLPKRTLAHCMLVCKRWYRIASDETLWQR 177
F LS +++L + +L + + H CK + D+T+W R
Sbjct: 6 FLELSYDILLEISTYLDYKDIVHLSETCKSLSYVFDDKTIWHR 48
>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 36 ENVNPNTNSCSPITKRSPGPSKAKSPR---VHTGKPLQQTDCETTLVEGIAFDEE 87
E + + NS +P TK S P+K PR VH K L + T G+ E+
Sbjct: 5 ELIEESNNSGTPATKSSSKPTKKIRPRNDLVHYSKALSKVLRHTAKANGLQIRED 59
>SPBC1703.08c |||5-formyltetrahydrofolate
cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 71 QTDCETTLVEGIAFDEE 87
+TDCE +V G+AFDE+
Sbjct: 118 ETDCELIIVPGVAFDEK 134
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 1.6
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 167 RIASDETLWQRLDLGNKAIARDALGKILDRKPVIVRLASSELETLDRLL-ENCPGLKKLS 225
+I DE+ Q LD A + GK+ D K I+R S +E L+ LL E +K+LS
Sbjct: 1510 KIQVDESTIQELDHEITASKNNYEGKLND-KDSIIRDLSENIEQLNNLLAEEKSAVKRLS 1568
Query: 226 LE 227
E
Sbjct: 1569 TE 1570
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.9 bits (59), Expect = 2.8
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 225 SLESVNVADTTCAILGRCTNLETLNMTMAQGITAEGSRALLEGCVNLQSLNISWCNLSEA 284
S E++ + ++ R NL L+ AQ ++ + S + V Q+L + +L E+
Sbjct: 421 SAEAMEGEEQEPSLAERLQNLTKLDQ-QAQALSTQISASTSLSTVLTQALKTNDQSLLES 479
Query: 285 ALQVL-VDMLPRRLQRLNLGGARIMTDELTERLCARCPRLAELDL-SDCSRLTPRALQSL 342
V+ + ++RL+ A I+ D+L E+L R R L + C+ +T L
Sbjct: 480 CFNNNNVETIDTTIRRLDPSLAPILLDKLAEKLALRPMRADVLMVWIRCTLITHGG--HL 537
Query: 343 VTLGRLEHAALSRCYMLSGHTLSKLSAMPSLR 374
V + L+H L+ + + SK S+M +L+
Sbjct: 538 VLVDDLKH-KLANLHSILEDRASKYSSMLALQ 568
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,079
Number of Sequences: 5004
Number of extensions: 58873
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 19
length of query: 417
length of database: 2,362,478
effective HSP length: 75
effective length of query: 342
effective length of database: 1,987,178
effective search space: 679614876
effective search space used: 679614876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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