Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001692-TA|BGIBMGA001692-PA|IPR002048|Calcium-binding
EF-hand, IPR011511|Variant SH3, IPR001452|Src homology-3,
IPR000108|Neutrophil cytosol factor 2, IPR000261|EPS15 homology (EH),
IPR010989|t-snare
         (1304 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.84 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   5.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.1 bits (57), Expect = 0.84
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 129  GLSPTQPSNQSLLGDFGSGQPLIQPLVQPVKPPVSTVPDLISGVKP-LSQSLLDSPPMAP 187
            G  P   + +++L D G+GQ    P +    P V  V +      P +  S +  PP   
Sbjct: 1752 GRHPLLTTIRNVLADAGTGQQETIPPIDEEPPSVEAVEEEREEAPPSVHSSTVVPPPQHS 1811

Query: 188  TVQPLI 193
            T Q L+
Sbjct: 1812 TTQSLV 1817


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 160 PPVSTVPDLISGVKPLSQSLLDSPPMAP 187
           PP+    D ++ +  + +SLLD P  AP
Sbjct: 119 PPMPITTDNVAAISGVLRSLLDRPLPAP 146


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,136
Number of Sequences: 317
Number of extensions: 9827
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 4
length of query: 1304
length of database: 114,650
effective HSP length: 65
effective length of query: 1239
effective length of database: 94,045
effective search space: 116521755
effective search space used: 116521755
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)