GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001692-TA|BGIBMGA001692-PA|IPR002048|Calcium-binding
EF-hand, IPR011511|Variant SH3, IPR001452|Src homology-3,
IPR000108|Neutrophil cytosol factor 2, IPR000261|EPS15 homology (EH),
IPR010989|t-snare
         (1304 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.027
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   2.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   5.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    24   7.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    24   9.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.027
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 16  FSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPV----LGQIWSLADTNADGKLDLKEFSI 71
           FS + RN    NGNL  E+ ++F     L        LG + S  DT+ DGKL++ EF +
Sbjct: 242 FSHYDRNN---NGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYM 298

Query: 72  A 72
           A
Sbjct: 299 A 299


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 203 DPLMGSVQPLIGSQPLAGPTPLVSSPQTLVNSSPLVSSQPIMSSQPLISAST 254
           DP+ G+++  IGS+PL  P    S P T+  ++   ++    ++    + +T
Sbjct: 80  DPVPGNLEQ-IGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 636 LEWEKKRTRELEALRSEEQSKVLSLKAKCQSLSAQLGAESVRCSTLAAS 684
           LE+E +R RE+E L S E+SK  S  ++ +S ++ +    +    L +S
Sbjct: 62  LEYELRRIREIEKLGS-ERSKSRSPDSRDRSNTSNISKTVILSDKLESS 109


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 636 LEWEKKRTRELEALRSEEQSKVLSLKAKCQSLSAQLGAESVRCSTLAAS 684
           LE+E +R RE+E L S E+SK  S  ++ +S ++      +  + L +S
Sbjct: 62  LEYELRRIREIEKLGS-ERSKSRSPDSRDRSSTSNTSKTVILSNKLESS 109


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 636 LEWEKKRTRELEALRSEEQSKVLSLKAKCQSLSAQLGAESVRCSTLAAS 684
           LE+E +R RE+E L S E+SK  S  ++ +S ++      +  + L +S
Sbjct: 62  LEYELRRIREIEKLGS-ERSKSRSPDSRDRSNTSNTSKTVILSNKLESS 109


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,469
Number of Sequences: 429
Number of extensions: 12479
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 6
length of query: 1304
length of database: 140,377
effective HSP length: 66
effective length of query: 1238
effective length of database: 112,063
effective search space: 138733994
effective search space used: 138733994
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)