Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001691-TA|BGIBMGA001691-PA|IPR011701|Major facilitator
superfamily MFS_1
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04...    31   2.5  
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea...    31   2.5  
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea...    31   2.5  
At1g50310.1 68414.m05640 monosaccharide transporter (STP9) ident...    31   2.5  
At1g18940.1 68414.m02357 nodulin family protein similar to nodul...    31   3.3  
At2g27670.1 68415.m03353 hypothetical protein contains Pfam prof...    30   4.3  
At1g23560.1 68414.m02964 expressed protein contains Pfam profile...    30   4.3  
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    30   4.3  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    29   7.6  

>At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 622

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 305 LNDINDGGKIEPLKDNCLHSLFHHNPELALNQKNVLLQEET-KRMNLMTEIM---HPNLI 360
           L+ +     +E LK      L     E+A+ Q NVLL + T KR+ +   +M    P LI
Sbjct: 337 LDHLKTLSSLEVLKIFASTDLEDETREMAIRQLNVLLSDHTSKRVEIDFSVMRQLQPLLI 396

Query: 361 QVVRQSQLSDS 371
             +RQ  ++DS
Sbjct: 397 SCLRQEGITDS 407


>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 537

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 603 GTARIASSYGLVRMFQSVAAVSVPPTAGYIRDLTGGFSWCFYGM--GSCM 650
           G    A  Y L      V AV+V PT  Y    +   +WCFY +  GSC+
Sbjct: 295 GDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCL 344


>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 565

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 603 GTARIASSYGLVRMFQSVAAVSVPPTAGYIRDLTGGFSWCFYGM--GSCM 650
           G    A  Y L      V AV+V PT  Y    +   +WCFY +  GSC+
Sbjct: 295 GDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCL 344


>At1g50310.1 68414.m05640 monosaccharide transporter (STP9)
           identical to monosaccharide transporter STP9 protein
           [Arabidopsis thaliana] GI:15487254; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 517

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 160 LSSALCEKYSCRLVVFIGGLFCASGLALSFFSTGLLHLLLSFGVMTGIGGGLSTTPGIVI 219
           ++SA+  KY  ++ +F+GG+    G   + F+T +  L++   ++ G+G G +     V 
Sbjct: 101 VASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVG-RLLLGVGVGFANQSTPVY 159

Query: 220 VSQ 222
           +S+
Sbjct: 160 LSE 162


>At1g18940.1 68414.m02357 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 526

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 512 AIGHTKAAAGRLVAISAVLDLCGRLGLGWLCDLHLFCRRKAYIISIFVA---GAAVXXXX 568
           ++ +T      L+A+  + +  GR G G++ D  L   RK +   + +A   G       
Sbjct: 344 SLRYTSVEINSLLALWNIWNFIGRFGGGYVSDWLL--HRKGWPRPLLMATTLGTMTIGHL 401

Query: 569 XXXXXXXXAIVSGAY--GLCLGCWFLLVPVLLADAFGTARIASSYGLVRMFQSVAA-VSV 625
                    +  G+   G+C G  + L+P + ++ FG   + + Y  + +   + + +  
Sbjct: 402 IIASGFQGNLYPGSIIVGICYGSQWSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFS 461

Query: 626 PPTAGYIRDLT 636
               GYI D T
Sbjct: 462 VRLIGYIYDRT 472


>At2g27670.1 68415.m03353 hypothetical protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 293

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 603 GTARIASSYGLVRMFQSVAAVSVPPTAGYIRDLT 636
           G  RI S   + ++FQ  + ++VPP + +IR++T
Sbjct: 235 GKGRIGSKVTMEQIFQPCSLLNVPPISWFIREIT 268


>At1g23560.1 68414.m02964 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 332

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 603 GTARIASSYGLVRMFQSVAAVSVPPTAGYIRDLT 636
           G  RI S   + +MFQ  A ++ PP + YIR +T
Sbjct: 233 GRGRIGSKVTMDQMFQPSALLTPPPLSWYIRGIT 266


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 18  SAPIEKQRPTSLVLELPLATVPSRRVSLGDVSD--GAGGGFPADAVFGD 64
           SAP+   + +S      ++ VPS ++   D  +   +G GF +D++FGD
Sbjct: 252 SAPVHNPQESSATFGSRVSNVPSNQLVPKDPKELAASGNGFTSDSLFGD 300


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 164 LCEKYSCRLVVFIGGLFCASGLALSFFSTGLLHLLLSFGVMTGIGGGLSTTPGIVIVSQY 223
           L + +  R V+ IG    +   AL     G +  L+   ++ GIG G+S +    ++++ 
Sbjct: 158 LSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIART 217

Query: 224 FD-KHRALANGICVSGTAAGSFVFPMLIEKLVDVY 257
              K R+ A G    G + GS +  +L   +++ +
Sbjct: 218 IPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETF 252


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,386
Number of Sequences: 28952
Number of extensions: 474662
Number of successful extensions: 1192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 10
length of query: 674
length of database: 12,070,560
effective HSP length: 86
effective length of query: 588
effective length of database: 9,580,688
effective search space: 5633444544
effective search space used: 5633444544
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)