GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001691-TA|BGIBMGA001691-PA|IPR011701|Major facilitator
superfamily MFS_1
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    29   1.6  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   2.1  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   4.9  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   4.9  

>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 121 IMETFPDSSASVASWIPHALSTLCLALAPRSNPVFSAAPLSSALCEKYSCRLVVFIGGLF 180
           I E F D+S+S  SWI  A       LA  SN V    P     C     ++V++I   F
Sbjct: 123 IAEDFNDTSSS--SWIGSAY-----VLA--SNAVL---PAVGVFCNILGRKIVLYICIFF 170

Query: 181 CASGLALSFFSTGLLHLLLSFGVMTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTA 240
              G AL   S  ++ L++   +    GGG+ +   I+I      + R + +GI  +   
Sbjct: 171 FMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISDITPLRTRPMYSGILATAWG 230

Query: 241 AGSFVFPML 249
           A     P++
Sbjct: 231 AALVAGPII 239


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 210 GLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFVFPMLIEKLVDV 256
           G +TT  ++    +  + RA ++GIC +   AG+ +  +L  KL +V
Sbjct: 473 GPNTTCFVIPAEVFPSRVRAFSHGICAACGKAGAILSALLFNKLTEV 519


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 161 SSALCEKYSCRLVVFIGGLFCASGLALSFFSTGLLHLL 198
           SSAL  K   R  V++   FCA G  + F +T L H L
Sbjct: 120 SSALYSKSENRYEVYLLMEFCAGGGLIDFMNTRLQHRL 157


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 320 NCLHSLFHHNPELALNQKNVLLQEETKRMNLMTE 353
           +C  S +HH  + ++++   +L+EE K+  L TE
Sbjct: 9   SCSLSAYHHTAKQSIDKYKSVLEEERKKQLLRTE 42


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,577
Number of Sequences: 5004
Number of extensions: 86556
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 4
length of query: 674
length of database: 2,362,478
effective HSP length: 77
effective length of query: 597
effective length of database: 1,977,170
effective search space: 1180370490
effective search space used: 1180370490
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)