Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001691-TA|BGIBMGA001691-PA|IPR011701|Major facilitator
superfamily MFS_1
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1266 + 27444755-27444760,27445598-27446740 42 0.002
12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073 34 0.42
09_03_0090 + 12292125-12292427,12293848-12294608,12295170-12295668 33 0.56
03_02_0641 + 10076105-10076430,10076496-10076667,10076775-100769... 31 3.0
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254... 31 4.0
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011 31 4.0
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 30 5.2
09_03_0093 + 12311123-12311446,12312260-12312624,12312735-123130... 29 9.1
09_02_0047 - 3528462-3528986,3531432-3531818 29 9.1
>12_02_1266 + 27444755-27444760,27445598-27446740
Length = 382
Score = 41.9 bits (94), Expect = 0.002
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 512 AIGHTKAAAGRLVAISAVLDLCGRLGLGWLCDLHLFCRR--KAYIISIFVAGAAVXXXXX 569
++G++ LV++ ++ + GR G G++ D L R + + I + + ++
Sbjct: 199 SLGYSTKETSTLVSLWSIWNFSGRFGAGYISDHFLRSRGVGRPFFIGVTLLVMSLGHAII 258
Query: 570 XXXXXXXAIVSGAY-GLCLGCWFLLVPVLLADAFGTARIASSYGLVRMFQSVAA-VSVPP 627
V GLC GC + L+P + ++ FG + + +V + V + +
Sbjct: 259 ASGILASLYVGSVLVGLCYGCQWALMPSITSEIFGLNHFGTIFNVVAVASPVGSYILSVR 318
Query: 628 TAGYIRDL 635
GYI D+
Sbjct: 319 VVGYIYDM 326
>12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073
Length = 513
Score = 33.9 bits (74), Expect = 0.42
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 513 IGHTKAAAGRLVAISAVLDLCGRLGLGWLCDLHLFCRRKAYIISIFVAGAAVXXXXXXXX 572
+G + A L+ +++ L G L GW CD R A ++F+AG+A
Sbjct: 67 LGVSDAEIEVLIGATSIYSLVGSLAAGWACDRAGRRRTIALSAAMFLAGSA----ATAAA 122
Query: 573 XXXXAIVSGAYGLCLGCWFLLV--PVLLAD 600
A+++G + C F LV PV +A+
Sbjct: 123 SGYAALMAGQLVAGVACGFGLVVAPVYIAE 152
>09_03_0090 + 12292125-12292427,12293848-12294608,12295170-12295668
Length = 520
Score = 33.5 bits (73), Expect = 0.56
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 609 SSYGLVRMFQSVAAVSVPPTAGYIRDLTGGFSWCFYGMGS 648
S Y L R F+SV A PP G++ + G++ YG GS
Sbjct: 369 SIYALDRSFESVLASFAPPIVGFLAEHAYGYNPVSYGAGS 408
>03_02_0641 +
10076105-10076430,10076496-10076667,10076775-10076962,
10077128-10077286,10077518-10077863
Length = 396
Score = 31.1 bits (67), Expect = 3.0
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 581 GAYGLCLGCWFLLVPVLLADAFGTARIASSYGLVRMFQSVAAVSVPPTAG-YIRDLTGGF 639
GA L + +V +LL AF A S+GL R + AAVS +G ++RD GG
Sbjct: 8 GAGFLAVAVSTSIVFLLLLHAFSLPASALSFGLARRHRKDAAVSCDVFSGSWVRDDGGGG 67
Query: 640 SWCFYGMGSCMVL 652
+ + G +C V+
Sbjct: 68 AAAYTGY-NCPVI 79
>12_01_0329 +
2545511-2546683,2546983-2546993,2547377-2547438,
2547882-2548225
Length = 529
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 186 ALSFFSTGLLHLLLSFGVMTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFV 245
+LSF ++ +LH+ + +T G G V ++ Y + L + + + TA S
Sbjct: 209 SLSFVNSNILHICAARNAITRAACGCHPYGGEVPMAMYVCQPAHLLDALICNATATPSSP 268
Query: 246 FPMLI 250
FP+L+
Sbjct: 269 FPLLV 273
>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
Length = 508
Score = 30.7 bits (66), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 609 SSYGLVRMFQSVAAVSVPPTAGYIRDLTGGFSWCFYGMG 647
S Y L R +S+ A PP GY+ + G++ YG+G
Sbjct: 360 SIYALDRSLESLFASFAPPVVGYLAEHAYGYNPITYGVG 398
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 30.3 bits (65), Expect = 5.2
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 199 LSFGVMTGIGGGLSTTPGIVI---VSQYFDKHRALANGIC 235
L FG GI GG++ G +I S Y KHRA N C
Sbjct: 40 LMFGYDVGISGGVTAMDGFLIKFFPSVYARKHRARENNYC 79
>09_03_0093 +
12311123-12311446,12312260-12312624,12312735-12313004,
12313100-12313664
Length = 507
Score = 29.5 bits (63), Expect = 9.1
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 609 SSYGLVRMFQSVAAVSVPPTAGYIRDLTGGFSWCFYGMG 647
S Y L R F+S+ A PP GY+ GF G G
Sbjct: 334 SIYALDRSFESILASFAPPAVGYLSQHVYGFKPAAAGGG 372
>09_02_0047 - 3528462-3528986,3531432-3531818
Length = 303
Score = 29.5 bits (63), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 51 GAGGGFPADAVFGDGEAAAGRVQEVET 77
G GGG PA VFGD A G ++T
Sbjct: 27 GGGGGVPAVIVFGDSTADTGNNNFIQT 53
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,574
Number of Sequences: 37544
Number of extensions: 664961
Number of successful extensions: 1879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1872
Number of HSP's gapped (non-prelim): 9
length of query: 674
length of database: 14,793,348
effective HSP length: 87
effective length of query: 587
effective length of database: 11,527,020
effective search space: 6766360740
effective search space used: 6766360740
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -