GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001690-TA|BGIBMGA001690-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
         (468 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    34   0.003
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    32   0.009
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    29   0.083
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    28   0.15 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    28   0.19 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    26   0.78 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   3.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   4.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   7.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 175 YSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYA--RHVPACSKTFQCP 232
           Y      K FA    L +HY      K  +CE C+K F  + + +  R +    + ++C 
Sbjct: 92  YRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCD 151

Query: 233 LCNKEYASRDRYTVHLLRKHPQIH 256
           +C + +    +     L +H +IH
Sbjct: 152 VCERAFEHSGK-----LHRHMRIH 170



 Score = 29.9 bits (64), Expect = 0.048
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 175 YSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC--SKTFQCP 232
           Y  K   K F   K L  H       K   C+ C K F        H  A    K ++C 
Sbjct: 204 YVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCT 263

Query: 233 LCNKEYASRDRYTVHL 248
           LC++ + S+    +H+
Sbjct: 264 LCHETFGSKKTMELHI 279



 Score = 28.7 bits (61), Expect = 0.11
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 227 KTFQCPLCNKEYASRDRYTVHLLRKH 252
           KT+QC LC K +  ++ Y  H LR H
Sbjct: 60  KTYQCLLCQKAFDQKNLYQSH-LRSH 84


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 201 KVIECERCNKGFPSETDYARHVP----ACSKTFQCPLCNKEYASRDRYTVHLLRKH 252
           K+  C+ C K   S+    RHV        + ++C +C + Y SR+    H+   H
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYH 59



 Score = 27.9 bits (59), Expect = 0.19
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 224 ACSKTFQCPLCNKEYASRDRYTVHLLRKHPQIHKEFK 260
           +  K F C LC K   S+     H+  KH +  +E++
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYR 37


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 29.1 bits (62), Expect = 0.083
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 205 CERCNKGFPSETDYARHVP-ACSKTFQCPLCNKEYASRDRYTVHLLRKHPQI-HKEFKMN 262
           CE CNK   S T   RH+    ++  + P+CN     R   +++ LR H  I H++   N
Sbjct: 5   CEPCNKILTSLTRLRRHIQNVHTRPSKEPICN--ICKRVYSSLNSLRNHKSIYHRQHSKN 62

Query: 263 NK 264
            +
Sbjct: 63  EQ 64



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 229 FQCPLCNKEYASRDRYTVHLLRKHPQIHKE 258
           F+C  CNK   S  R   H+   H +  KE
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVHTRPSKE 32


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 204 ECERCNKGFPSETDYARHVP----ACSKTFQCPLCNKEYASRDRYTVHLLRKH 252
           EC  C + F       RH           + C  CN+ Y +++  T H   +H
Sbjct: 7   ECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59



 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 136 CNERYIKKRDLLTHLNRKHNYS 157
           CN RY  K  L TH + +H  S
Sbjct: 41  CNRRYRTKNSLTTHKSLQHRGS 62


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 190 LNQHYNKVHSIKVIECERCNKGFPSETDYARHVPACSKTFQCPLCNKEYASRDRYTVHL- 248
           L  H       K  +CE+C+    +++    H+ + S  +Q    N  YA++  +++ L 
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLH 63

Query: 249 LRKH 252
           LRK+
Sbjct: 64  LRKY 67


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 5/30 (16%)

Query: 227 KTFQCPLCNKEYASRDRYTVHLLRKHPQIH 256
           K F+CP C+K + +RD    H L+ H ++H
Sbjct: 8   KPFECPECHKRF-TRD----HHLKTHMRLH 32


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 350 DESIFCSETVSLSDIQTQTF-PIEFGLSRSNKETVTSETQSPDLSIKETQTCLCLY 404
           +ES F   T+  + I    F PI FG   +++  +T  T    +S+  T T +CLY
Sbjct: 703 NESKFIGFTMYTTCIIWLAFVPIYFGTGNAHETQIT--TLCVAISLSATVTLVCLY 756


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 350 DESIFCSETVSLSDIQTQTF-PIEFGLSRSNKETVTSETQSPDLSIKETQTCLCLY 404
           +ES F   T+  + I    F PI FG   +++  +T  T    +S+  T T +CLY
Sbjct: 793 NESKFIGFTMYTTCIIWLAFVPIYFGTGNAHETQIT--TLCVAISLSATVTLVCLY 846


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 104 NITRHI-LTENKLTVILLAPDR 124
           NIT +I  T NK+TVIL  P R
Sbjct: 113 NITLNIESTSNKMTVILTPPGR 134


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 201 KVIECERCNKGFPSETDYARHVPACSKTFQCPLCNKEYA 239
           K   C+ C K + S      H+   +   +C LC K ++
Sbjct: 15  KSFSCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAFS 53



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 227 KTFQCPLCNKEYASRDRYTVHLLRKH 252
           K+F C  C K Y S     +H +R H
Sbjct: 15  KSFSCKYCEKVYVSLGALKMH-IRTH 39


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 27 LANAGEMKNMYDWGLNEEFFKITDIK 52
          LAN  E+K +Y W + E  F   +I+
Sbjct: 12 LANGEEIKTIYSWNVIEYNFPNDNIR 37


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 88  MMNWIKTTTSDSSVPQNITRHILTENKLTVILLAPDRLAKVYITCPLDCN 137
           MM    +TT  S+V       ++    LT      ++  K +IT  +DC+
Sbjct: 917 MMPTRYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKHITTTIDCS 966


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 207 RCNKGFPSETDYARHVPACSKTFQCPLC 234
           R N G  S  D   H  + SKT Q P C
Sbjct: 541 RANSGSTSSGDDELHRASLSKTPQPPQC 568


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,003
Number of Sequences: 429
Number of extensions: 5488
Number of successful extensions: 28
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 21
length of query: 468
length of database: 140,377
effective HSP length: 60
effective length of query: 408
effective length of database: 114,637
effective search space: 46771896
effective search space used: 46771896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)