Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001690-TA|BGIBMGA001690-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
(468 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 53 5e-07
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 51 1e-06
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 48 1e-05
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 48 1e-05
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 47 2e-05
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 46 4e-05
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 46 7e-05
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 45 9e-05
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 45 9e-05
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 45 9e-05
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 45 1e-04
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 44 2e-04
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 44 2e-04
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 44 2e-04
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 43 5e-04
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 42 7e-04
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 42 9e-04
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 42 0.001
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 41 0.002
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 40 0.005
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 38 0.011
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 38 0.011
At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains ... 37 0.033
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 34 0.18
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 33 0.31
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 33 0.31
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 32 0.71
At1g25510.1 68414.m03168 aspartyl protease family protein contai... 32 0.94
At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c... 31 1.2
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c... 31 1.2
At5g40450.1 68418.m04905 expressed protein 29 5.0
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 5.0
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 29 6.6
At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo... 29 6.6
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa... 29 8.7
At1g78010.1 68414.m09091 tRNA modification GTPase, putative simi... 29 8.7
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 29 8.7
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 29 8.7
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 52.8 bits (121), Expect = 5e-07
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY-------SKDFAVELQYY- 167
VI L+P L A C + CN+ + + ++L H R HN SK ++ + Y
Sbjct: 68 VIALSPTTLMATNRFVCEI-CNKGFQRDQNLQLH-RRGHNLPWKLKQRSKQEVIKKKVYI 125
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C +TC + S+ + + +HY++ H K +CE+C+K + ++D+ H C +
Sbjct: 126 CPIKTCVHHD--ASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGT 183
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
+ ++C C ++ +D + H
Sbjct: 184 REYKCD-CGTLFSRKDSFITH 203
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 51.2 bits (117), Expect = 1e-06
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY----SKDFAVELQ---YYC 168
V+ L+P L A C + CN+ + ++++L H R HN + E++ Y C
Sbjct: 69 VVALSPKTLMATNRFICDV-CNKGFQREQNLQLH-RRGHNLPWKLKQKSTKEVKRKVYLC 126
Query: 169 SYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-SK 227
TC + S+ + + +HY + H K +CE+C+K + ++D+ H C +K
Sbjct: 127 PEPTCVHHDP--SRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTK 184
Query: 228 TFQCPLCNKEYASRDRYTVH 247
++C C ++ RD Y H
Sbjct: 185 EYRCD-CGTIFSRRDSYITH 203
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 48.4 bits (110), Expect = 1e-05
Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 16/201 (7%)
Query: 57 ENISEFLCTTCEDMLMICKRFKSQCQQSNSIMMNWIKTTTSDSSVPQNITRHILTENKLT 116
EN+S L + D + +++ SN + + SS+ + + + +
Sbjct: 19 ENMSN-LTSASGDQASVSSGNRTETSGSNINQHHQEQCFVPQSSLKRKRNQPGNPDPEAE 77
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYY 167
V+ L+P L A C + CN+ + + ++L H R HN +KD + Y
Sbjct: 78 VMALSPKTLMATNRFICEV-CNKGFQRDQNLQLH-KRGHNLPWKLKQRSNKDVVRKKVYV 135
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C C + S+ + + +H+ + H K +CE+C+K + ++D+ H C +
Sbjct: 136 CPEPGCVHHHP--SRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGT 193
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
K ++C C ++ RD + H
Sbjct: 194 KEYKCD-CGTLFSRRDSFITH 213
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 48.4 bits (110), Expect = 1e-05
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 19/153 (12%)
Query: 108 HILTENKLTVILLAPDRLAKV--YITCPLDCNERYIKKRDLLTHLNRKHNY--------S 157
H LT+ V+ L+P L + Y+ C + CN+ + + ++L H R+H
Sbjct: 16 HQLTDPDAEVVSLSPRTLLESDRYV-CEI-CNQGFQRDQNLQMH-RRRHKVPWKLLKRDK 72
Query: 158 KDFAVELQYY-CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSI-KVIECERCNKGFPSE 215
KD V + Y C TC + + + + +H+ + HS+ K CERC+KG+ +
Sbjct: 73 KDEEVRKRVYVCPEPTCLHHDPCHA--LGDLVGIKKHFRRKHSVHKQWVCERCSKGYAVQ 130
Query: 216 TDYARHVPAC-SKTFQCPLCNKEYASRDRYTVH 247
+DY H+ C S+ C C + ++ + + H
Sbjct: 131 SDYKAHLKTCGSRGHSCD-CGRVFSRVESFIEH 162
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 47.2 bits (107), Expect = 2e-05
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY----SKDFAVELQ---YYC 168
VI L+P L A C + CN+ + ++++L H R HN + E++ Y C
Sbjct: 67 VIALSPKTLMATNRFICEV-CNKGFQREQNLQLH-RRGHNLPWKLKQKSTKEVKRKVYLC 124
Query: 169 SYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-SK 227
+C + S+ + + +HY + H K +C++C+K + ++D+ H C +K
Sbjct: 125 PEPSCVHHDP--SRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTK 182
Query: 228 TFQCPLCNKEYASRDRYTVH 247
++C C ++ RD + H
Sbjct: 183 EYRCD-CGTLFSRRDSFITH 201
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 46.4 bits (105), Expect = 4e-05
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY-------SKDFAVELQYYC 168
VI L+P + A C + CN+ + ++++L H R HN S Y C
Sbjct: 68 VIALSPKTIMATNRFLCEV-CNKGFQREQNLQLH-RRGHNLPWKLKQKSNKEVRRKVYLC 125
Query: 169 SYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-SK 227
+C + ++ + + +HY + H K +C++C+K + ++D+ H C +K
Sbjct: 126 PEPSCVHHDP--ARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTK 183
Query: 228 TFQCPLCNKEYASRDRYTVH 247
++C C ++ RD Y H
Sbjct: 184 EYRCD-CGTIFSRRDSYITH 202
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 45.6 bits (103), Expect = 7e-05
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 117 VILLAPDRLAKVY-ITCPLDCNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYY 167
VI L+P+ L C + CN+ + + ++L H R HN +K+ + Y
Sbjct: 54 VIALSPNSLMTTNRFICEV-CNKGFKRDQNLQLH-RRGHNLPWKLKQRTNKEQVKKKVYI 111
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C +TC + ++ + + +H+++ H K +C++C+K + +D+ H C +
Sbjct: 112 CPEKTCVHHDP--ARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGT 169
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
K ++C C ++ +D + H
Sbjct: 170 KEYRCD-CGTLFSRKDSFITH 189
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 45.2 bits (102), Expect = 9e-05
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYY 167
VI L+P L A C + CN+ + + ++L H R HN +K+ ++ Y
Sbjct: 47 VIALSPKTLMATNRFVCEI-CNKGFQRDQNLQLH-RRGHNLPWKLRQRSTKEVRKKV-YV 103
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C C + S+ + + +H+ + H K +CE+C+K + ++D+ H C +
Sbjct: 104 CPVSGCVHHDP--SRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGT 161
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
K ++C C ++ RD + H
Sbjct: 162 KEYKCD-CGTLFSRRDSFITH 181
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 45.2 bits (102), Expect = 9e-05
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYY 167
VI L+P L A C + CN+ + + ++L H R HN +K+ + Y
Sbjct: 68 VIALSPKTLLATNRFVCEI-CNKGFQRDQNLQLH-RRGHNLPWKLKQKNTKEQQKKKVYV 125
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C C + S+ + + +H+ + H K +CE+C+K + ++D+ H C +
Sbjct: 126 CPETNCAHHHP--SRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGT 183
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
+ ++C C ++ +D + H
Sbjct: 184 RDYRCD-CGTLFSRKDTFITH 203
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 45.2 bits (102), Expect = 9e-05
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYY 167
VI L+P L A C + CN+ + + ++L H R HN +K+ + Y
Sbjct: 85 VIALSPKTLMATNRFVCEI-CNKGFQRDQNLQLH-RRGHNLPWKLKQRSNKEVIRKKVYV 142
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C +C + S+ + + +H+ + H K +C++C+K + ++D H C +
Sbjct: 143 CPEASCVHHDP--SRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHSKTCGT 200
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
K ++C C ++ RD + H
Sbjct: 201 KEYRCD-CGTLFSRRDSFITH 220
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 44.8 bits (101), Expect = 1e-04
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY-------SKDFAVELQYYC 168
VI L+P L A C + CN+ + + ++L H R HN S + Y C
Sbjct: 49 VIALSPKTLLATNRFVCEI-CNKGFQRDQNLQLH-RRGHNLPWKLRQKSNKEVKKKVYVC 106
Query: 169 SYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-SK 227
+C + S+ + + +H+ + H K +C++C+K + ++D+ H C +K
Sbjct: 107 PEVSCVHHDP--SRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTK 164
Query: 228 TFQCPLCNKEYASRDRYTVH 247
++C C ++ RD + H
Sbjct: 165 EYKCD-CGTLFSRRDSFITH 183
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 162 VELQYYCSYETCTYSMKFG-SKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYAR 220
+ L YC C ++ +K + + L HY + H IK C +C K F D+
Sbjct: 259 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRT 318
Query: 221 HVPACSKTFQCPLCNKEYASRDRYTVHL 248
H C K + C +C ++ + H+
Sbjct: 319 HEKNCGKLWYC-ICGSDFKHKRSLKDHI 345
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 44.4 bits (100), Expect = 2e-04
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 95 TTSDSSVPQNITRHILTENK-LTVILLAPDRLAKV--YITCPLDCNERYIKKRDLLTHLN 151
TT+++S + R T + V+ L+P L + YI C + CN+ + + ++L H
Sbjct: 30 TTTNTSTQKRKRRPAGTPDPDAEVVSLSPRTLLESDRYI-CEI-CNQGFQRDQNLQMH-R 86
Query: 152 RKHNY-----SKDFAVELQ---YYCSYETCTYSMKFGSKWFAERKFLNQHYNKVHSI-KV 202
R+H +D +E++ Y C TC + + + + +H+ + HS K
Sbjct: 87 RRHKVPWKLLKRDNNIEVKKRVYVCPEPTCLHHNPCHA--LGDLVGIKKHFRRKHSNHKQ 144
Query: 203 IECERCNKGFPSETDYARHVPACSKTFQCPLCNKEYASRDRYTVH 247
CERC+KG+ ++DY H+ C C + ++ + + H
Sbjct: 145 WVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEH 189
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 44.0 bits (99), Expect = 2e-04
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYY 167
VI L+P L A C + C + + + ++L H R HN SK+ + Y
Sbjct: 52 VIALSPTTLMATNRFLCEV-CGKGFQRDQNLQLH-RRGHNLPWKLKQRTSKEVRKRV-YV 108
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C +TC + S+ + + +H+ + H K CE+C K + ++D+ H C +
Sbjct: 109 CPEKTCVHH--HSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGT 166
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
+ ++C C ++ RD + H
Sbjct: 167 REYRCD-CGTIFSRRDSFITH 186
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 42.7 bits (96), Expect = 5e-04
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 162 VELQYYCSYETCTYSMKFG-SKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYAR 220
+ L YC E C ++ SK + + L HY + H K C +C K + D+
Sbjct: 223 LRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWRT 282
Query: 221 HVPACSKTFQCPLCNKEYASRDRYTVHL 248
H C K + C C ++ + H+
Sbjct: 283 HEKNCGKLWYC-TCGSDFKHKRSLKDHI 309
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 42.3 bits (95), Expect = 7e-04
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 162 VELQYYCSYETCTYSMKFG-SKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYAR 220
++L YC C ++ ++ + + L HY + H ++ C RC K F + D+
Sbjct: 298 LKLPCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWRT 357
Query: 221 HVPACSKTFQCPLCNKEYASRDRYTVHL 248
H C K + C C ++ + H+
Sbjct: 358 HEKNCGKLWYCS-CGSDFKHKRSLKDHV 384
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 41.9 bits (94), Expect = 9e-04
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 136 CNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYYCSYETCTYSMKFGSKWFAER 187
CN+ + ++++L H R HN +K+ + Y C ++C + ++ +
Sbjct: 11 CNKGFQREQNLQLH-KRGHNLPWKLKQKTNKNQVKKKVYICPEKSCVHHDP--ARALGDL 67
Query: 188 KFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-SKTFQCPLCNKEYASRDRYTV 246
+ +H+++ H K +C++C+K + +D+ H C S+ F+C C ++ +D +
Sbjct: 68 TGIKKHFSRKHGEKKWKCDKCSKKYAVISDWKAHNKICGSREFRCD-CGTLFSRKDSFIS 126
Query: 247 H 247
H
Sbjct: 127 H 127
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 41.5 bits (93), Expect = 0.001
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 117 VILLAPDRL-AKVYITCPLDCNERYIKKRDLLTHLNRKHNY--------SKDFAVELQYY 167
VI L+P L A C + C + + + ++L H R HN SK+ + Y
Sbjct: 56 VIALSPKTLMATNRFLCEI-CGKGFQRDQNLQLH-RRGHNLPWKLKQRTSKEVRKRV-YV 112
Query: 168 CSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-S 226
C ++C + ++ + + +H+ + H K +CE+C K + ++D+ H C +
Sbjct: 113 CPEKSCVHHHP--TRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGT 170
Query: 227 KTFQCPLCNKEYASRDRYTVH 247
+ ++C C ++ RD + H
Sbjct: 171 REYRCD-CGTIFSRRDSFITH 190
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 157 SKDFAVELQYYCSYETCTYSMKFG-SKWFAERKFLNQHYNKVHSIKVIEC-ERCNKGFPS 214
S + L YC E C ++ SK + + L HY + H K C ++C K F
Sbjct: 139 SSSSILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAV 198
Query: 215 ETDYARHVPACSKTFQCPLCNKEYASRDRYTVHL 248
D+ H C K + C +C ++ + H+
Sbjct: 199 RGDWRTHEKNCGKLWFC-VCGSDFKHKRSLKDHV 231
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 39.5 bits (88), Expect = 0.005
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 117 VILLAPDRLAKV--YITCPLDCNERYIKKRDLLTHLNRKHNY-----SKDFAVELQ---Y 166
V+ L+P L + Y+ C + CN+ + + ++L H R+H ++ E++ Y
Sbjct: 56 VVSLSPRTLLESDRYV-CEI-CNQGFQRDQNLQMH-RRRHKVPWKLLKRETNEEVRKRVY 112
Query: 167 YCSYETCTYSMKFGSKWFAERKFLNQHYNKVHSI-KVIECERCNKGFPSETDYARHVPAC 225
C TC + + + + +H+ + HS K CERC+KG+ ++DY H+ C
Sbjct: 113 VCPEPTCLHHNPCHA--LGDLVGIKKHFRRKHSNHKQWICERCSKGYAVQSDYKAHLKTC 170
Query: 226 SKTFQCPLCNKEYASRDRYTVH 247
C + ++ + + H
Sbjct: 171 GTRGHSCDCGRVFSRVESFIEH 192
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 38.3 bits (85), Expect = 0.011
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 162 VELQYYCSYETCTYSMKFG-SKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYAR 220
+ L +C C ++ +K + + L HY + H K C C K F + D+
Sbjct: 220 LRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGDWRT 279
Query: 221 HVPACSKTFQCPLCNKEYASRDRYTVHL 248
H C K + C C ++ + H+
Sbjct: 280 HEKNCGKLWYCS-CGSDFKHKRSLKDHV 306
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 38.3 bits (85), Expect = 0.011
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 167 YCSYETCTYSMKFG-SKWFAERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC 225
YC E C + SK + + L HY + H K C C K + D+ H C
Sbjct: 192 YCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNC 251
Query: 226 SKTFQCPLCNKEYASRDRYTVHL 248
K + C +C ++ + H+
Sbjct: 252 GKRWVC-VCGSDFKHKRSLKDHV 273
>At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains
Pfam PF02176: TRAF-type zinc finger; similar to TNF
receptor associated factor 4 (GI:7274404) [Mus musculus]
(GI:7274404); similar to Cysteine rich motif Associated
to Ring and Traf domains protein (mCART1)(GI:1041446)
[Mus musculus]
Length = 192
Score = 36.7 bits (81), Expect = 0.033
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 186 ERKFLNQHYNKVHSIKVIECERCNKGFPSETDYARHVPAC-SKTFQCPLCNKEYASRDRY 244
ER+ + H ++ +++ CE C P+ D A H C ++T C CN R+RY
Sbjct: 71 EREIFDSHKGEICPKRIVTCEFCEFPLPA-VDLAEHQEVCGNRTELCYQCNSYVRLRERY 129
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 34.3 bits (75), Expect = 0.18
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 196 KVHSIKVIECERCNKGFPSETDYARHVPACSKTFQCPLCNKEYASRDRYTVHLLRKHPQI 255
K + + + C C++ F E +H A K F+C +C+K+ ++ +H+L Q+
Sbjct: 5 KKRATEKVWCYYCDREFDDEKILVQHQKA--KHFKCHVCHKKLSTASGMVIHVL----QV 58
Query: 256 HKE 258
HKE
Sbjct: 59 HKE 61
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 33.5 bits (73), Expect = 0.31
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 190 LNQHYNKVHSIKVIECERCN-KGFPSETDYARHVPACSKTFQCPLCNKEYASRDRYTVHL 248
+ HY + H K C RC+ K F D H C K C ++ +D+ H+
Sbjct: 320 VKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHI 379
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 33.5 bits (73), Expect = 0.31
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 190 LNQHYNKVHSIKVIECERCN-KGFPSETDYARHVPACSKTFQCPLCNKEYASRDRYTVHL 248
+ HY + H K C RC+ K F D H C K C ++ +D+ H+
Sbjct: 320 VKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHI 379
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 32.3 bits (70), Expect = 0.71
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 160 FAVELQYY-CSYETCTYSMKFGSKWFAERKFL--NQHYNKVHSIKVIECERCN-KGFPSE 215
++++ YY C C ++ + K+ + + HY + H K+ C RC+ K F
Sbjct: 261 YSLKKHYYSCPQHGCRWNQRH-EKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVL 319
Query: 216 TDYARHVPACSKTFQCPLCNKEYASRDRYTVHL 248
+D H C C +++ +D+ H+
Sbjct: 320 SDLRTHEKHCGDIKWVCSCGTKFSRKDKLMSHV 352
>At1g25510.1 68414.m03168 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 483
Score = 31.9 bits (69), Expect = 0.94
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 362 SDIQTQTFPIEFGLSRSNKETVTSET-QSPDLSIKETQTCLCLYETSKSGGRYQDG 416
+D QT PI S S+ E ++ +T Q L + E + CLYE S G Y G
Sbjct: 180 ADCYHQTEPIFEPSSSSSYEPLSCDTPQCNALEVSECRNATCLYEVSYGDGSYTVG 235
>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 31.5 bits (68), Expect = 1.2
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 289 CDSPKRSSATQTRLDDK-IKNDVTLPSWSV--PGRSDGLEIKTDEISTQTVFEDLLSIKS 345
C R+ QT + +KN + LPS S+ PG+ LEIK + T V + S+
Sbjct: 38 CYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQKHPLEIKPAHLETVVVTAEPSSVPV 97
Query: 346 QTSEDES 352
+DE+
Sbjct: 98 AAEQDEA 104
>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 31.5 bits (68), Expect = 1.2
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 289 CDSPKRSSATQTRLDDK-IKNDVTLPSWSV--PGRSDGLEIKTDEISTQTVFEDLLSIKS 345
C R+ QT + +KN + LPS S+ PG+ LEIK + T V + S+
Sbjct: 38 CYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQKHPLEIKPAHLETVVVTAEPSSVPV 97
Query: 346 QTSEDES 352
+DE+
Sbjct: 98 AAEQDEA 104
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.5 bits (63), Expect = 5.0
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 282 ESFEDYICDSPKRSSATQT---RLDDKIKNDVTLPSWSVPGRSDGLEIKTDEISTQTVFE 338
ES D+P ++T +++DK K +VTL S GL+ K + +S V E
Sbjct: 1511 ESVVKQSLDTPSEEETSKTIDEKIEDKPKEEVTLHQEGREEGSYGLDTKDEAVS---VLE 1567
Query: 339 DLLSIKSQTSEDESIFCSETVSLSDIQTQTFPIEFGLSRSNKETVTSETQSP 390
+ Q ++E +E + + +Q + + KE V+++ QSP
Sbjct: 1568 S-RELGEQPQQEELCLANEQENETKLQEE----QVDKHEPTKEEVSNDQQSP 1614
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.5 bits (63), Expect = 5.0
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 343 IKSQTSEDESIFCSETVSLSDIQTQTFPIEFGLS-RSNKETVTSETQSPDLSIKETQTCL 401
++ S+ +IFC + SLS T+T + G++ S ETVT +T+S + E Q C
Sbjct: 929 VEQDVSQRSAIFCDKLPSLSAFVTET-TLAIGINGMSGNETVT-DTES---GLHEIQPCT 983
Query: 402 CLYETSKSGGRYQDGLSSSPCSNNFIS----TETQTGDLKCCVKSD 443
+ + S R+ G S + S +S E + + C+ SD
Sbjct: 984 TVCKLSPE-DRFGYGSSGAIGSVRSLSIDKNLEKDSSKVSSCLVSD 1028
>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
protein
Length = 1332
Score = 29.1 bits (62), Expect = 6.6
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 54 IRTENISEFLCTTCEDML---MICKRFKSQCQQSNSI-MMNWIKTTTSDSSVPQNITRHI 109
++ E I ++ C CE + ICK S S + + + T P +TR +
Sbjct: 265 MQVEAIQKYFCPNCEHKIHQCFICKNLGSSDNSSGAAEVFQCVSATCGYFYHPHCVTRRL 324
Query: 110 LTENKLTVILLAPDRLAKVYITCPL 134
NK L +A Y TCPL
Sbjct: 325 RLGNKEESEALERQIIAGEY-TCPL 348
>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 840
Score = 29.1 bits (62), Expect = 6.6
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 10/168 (5%)
Query: 301 RLDDKIKNDVTLPSWS--VPGRSDGLEIKTDEISTQTVFEDLLS--IKSQTSEDESIFCS 356
R KI+ND + S +P D + E +V D +S I S S C+
Sbjct: 605 RCSTKIENDSVSSAGSNLLPDEDDKSIVSISE-ENSSVSSDPISPAIDSNYSGKYLDCCT 663
Query: 357 ETVSLSDIQTQT-FPIEFGLSRSNKETVTS--ETQSPDLSIKETQTCLCLYETSKSGGRY 413
+ + D QT P+ R N+ VT E S D S+ T+ L+ + +
Sbjct: 664 GSENDKDQQTSVNSPLSVSPHRRNEYPVTQSDEDVSTDKSVGITKEYKLLHGIVQWFRKL 723
Query: 414 QDGLSSSPCSNNFISTETQTGDLKCCVKSDVLLSFNSTETQTCFDDDT 461
+ LSS S+ S T+T D+K +K + + ++ + Q D+
Sbjct: 724 KRTLSSEETSHRKASDATKTNDVK--IKKNQIGCYSESHPQALSSGDS 769
>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 28.7 bits (61), Expect = 8.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 214 SETDYARHVPACSKTFQCPLCNKEYASRDRYTVH 247
+E +R +P + CP+C EYAS++ H
Sbjct: 303 TELGESRRLPGNNDDIVCPICLSEYASKETVRPH 336
>At1g78010.1 68414.m09091 tRNA modification GTPase, putative similar
to tRNA modification GTPase trmE [strain PCC 7120,
Anabaena sp.] SWISS-PROT:Q8YN91
Length = 560
Score = 28.7 bits (61), Expect = 8.7
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 289 CDSPKRSSATQTRLDDKIKNDVTLPSWSVPGRSDGLEIKTDEISTQTVFEDLLS 342
C+ R+ RL + I++++ + W++ R L + +IS Q V E++LS
Sbjct: 499 CEQLVRTKEALVRLREAIEDEIPIDFWTIELREAALSLA--QISGQDVSEEVLS 550
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 28.7 bits (61), Expect = 8.7
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 165 QYYCSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECER-CNKGFPSETDYARHVP 223
Q C C + K+ S+ +K + H K+ S++ E C K F +E H+
Sbjct: 214 QVVCKEIGCGKAFKYPSQL---QKHQDSHV-KLDSVEAFCSEPGCMKYFTNEECLKSHIR 269
Query: 224 ACSKTFQCPLCNKEYASRDRYTVHLLRKHPQIHKE 258
+C + C +C ++ ++ +++H + H E
Sbjct: 270 SCHQHINCEICGSKHLKKN------IKRHLRTHDE 298
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 28.7 bits (61), Expect = 8.7
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 165 QYYCSYETCTYSMKFGSKWFAERKFLNQHYNKVHSIKVIECER-CNKGFPSETDYARHVP 223
Q C C + K+ S+ +K + H K+ S++ E C K F +E H+
Sbjct: 126 QVVCKEIGCGKAFKYPSQL---QKHQDSHV-KLDSVEAFCSEPGCMKYFTNEECLKSHIR 181
Query: 224 ACSKTFQCPLCNKEYASRDRYTVHLLRKHPQIHKE 258
+C + C +C ++ ++ +++H + H E
Sbjct: 182 SCHQHINCEICGSKHLKKN------IKRHLRTHDE 210
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,533,511
Number of Sequences: 28952
Number of extensions: 427608
Number of successful extensions: 1269
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 54
length of query: 468
length of database: 12,070,560
effective HSP length: 84
effective length of query: 384
effective length of database: 9,638,592
effective search space: 3701219328
effective search space used: 3701219328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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