Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001689-TA|BGIBMGA001689-PA|IPR007087|Zinc finger,
C2H2-type
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 55 1e-07
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 46 6e-05
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 46 8e-05
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 44 4e-04
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 42 0.001
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 41 0.003
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 41 0.003
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 40 0.007
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 39 0.009
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 39 0.009
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 38 0.020
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 36 0.081
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 36 0.081
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 36 0.11
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 35 0.14
At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ... 35 0.14
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 35 0.14
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 35 0.14
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 35 0.19
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 35 0.19
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 34 0.25
At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ... 34 0.25
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 34 0.25
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 34 0.25
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 34 0.33
At1g60640.1 68414.m06826 expressed protein 34 0.33
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 34 0.33
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 33 0.43
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 33 0.43
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 33 0.43
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 33 0.43
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 33 0.43
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 33 0.43
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ... 33 0.57
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ... 33 0.57
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 33 0.57
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 33 0.76
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 33 0.76
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 33 0.76
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 32 1.0
At4g08460.2 68417.m01397 expressed protein 32 1.0
At4g08460.1 68417.m01396 expressed protein 32 1.0
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 32 1.0
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ... 32 1.0
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ... 32 1.0
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 32 1.0
At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein ... 32 1.3
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 32 1.3
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ... 32 1.3
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ... 31 1.7
At5g28340.1 68418.m03441 pentatricopeptide (PPR) repeat-containi... 31 1.7
At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ... 31 1.7
At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein ... 31 1.7
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 31 1.7
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 31 1.7
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-... 31 1.7
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 31 1.7
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 31 2.3
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 31 2.3
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 31 2.3
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 31 2.3
At5g58020.1 68418.m07260 expressed protein contains PF04641: Pro... 31 3.1
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ... 31 3.1
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 31 3.1
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r... 30 4.0
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 30 4.0
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 30 4.0
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 30 4.0
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 30 4.0
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 30 4.0
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r... 30 4.0
At1g77770.2 68414.m09056 expressed protein 30 4.0
At1g77770.1 68414.m09055 expressed protein 30 4.0
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 30 4.0
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 30 4.0
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 30 5.3
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ... 30 5.3
At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein ... 30 5.3
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 30 5.3
At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ... 30 5.3
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 29 9.3
At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein ... 29 9.3
At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein ... 29 9.3
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 29 9.3
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 29 9.3
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 29 9.3
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r... 29 9.3
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 55.2 bits (127), Expect = 1e-07
Identities = 74/339 (21%), Positives = 132/339 (38%), Gaps = 45/339 (13%)
Query: 168 YRCEYCNTVFKGNEELEAHVRSLHAGEVSE-------TTDEESRVDRRCEDCDQTFPAEK 220
Y C+YC N + H++S H E+ E DEES + C++C F
Sbjct: 20 YLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKKPA 79
Query: 221 LLRQHVKN---VHTFSAFYKYC------KDSLTKRAAGVPKELYHC--ESCREGFITVYE 269
L+QH+++ +F+ + C KD L + +L+ C E+C+ F
Sbjct: 80 HLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGN 139
Query: 270 LKTHMRITHDIEYSWSTCNVCFERFYSKLSMAEHKRRCLPPPDAKACSYCDKLFTDVTSR 329
+ H++ H N ++ + L + C D +K + +
Sbjct: 140 VGRHVKKYHS--------NDNRDKDNTGLGDGDKDNTCKGDDDK------EKSGSGGCEK 185
Query: 330 EFHTPIFHPQARTADPDTRPANRDGNS----FKCVHCHRIY-YSERSLKH---HIKLKHS 381
E + + D++PA K + C + + Y + KH H+KL S
Sbjct: 186 ENEGNGGSGKDNNGNGDSQPAECSTGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKL-DS 244
Query: 382 TDEAMECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGM 441
+ C K +N+ L SH++ H + C + KR++R H E + G
Sbjct: 245 VEAFCSEPGCMKYFTNEECLKSHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGE 304
Query: 442 QRHKCIECETLFKEKRSLRKHVRSKH----PNSALFPQC 476
+ + C + F + +L+KH+++ H P FP C
Sbjct: 305 IKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGC 343
Score = 46.0 bits (104), Expect = 8e-05
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 78 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTNERNLKRHVDMFHGVKGE 137
CG+ F + H + H++ E FCS+ +TNE LK H+ H +
Sbjct: 222 CGKAFKYPSQLQKHQDS-HVKLDSVEA---FCSEPGCMKYFTNEECLKSHIRSCH----Q 273
Query: 138 H-HCGLCPKVYLSNQSLKRHLRTR---HLTGEEQYRCEYCNTVFKGNEELEAHVRSLH 191
H +C +C +L +++KRHLRT GE + E C++ F L+ H++++H
Sbjct: 274 HINCEICGSKHL-KKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 330
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 2 NQNQNMSMSLLDYVCDY--CNRIFTRKYNLQTHIENLHVNSSCHCEVCG-KRFGTTTGFH 58
+Q+ ++ + ++ C C + FT + L++HI + H +CE+CG K H
Sbjct: 235 HQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCH--QHINCEICGSKHLKKNIKRH 292
Query: 59 LHLSAGHNRYGQPLPECDLCGRIFTRKQNIVSHMITVH 96
L + G+ E + C F++ N+ HM VH
Sbjct: 293 LRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 330
Score = 38.3 bits (85), Expect = 0.015
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 362 CHRIYYSERSLKHHIKLKHSTDEAMECKSCGK--ICSN-KYYLASHMKIVHSTNDWSKCD 418
C + + +E LK HI+ H + + C+ CG + N K +L +H + S+ KC+
Sbjct: 254 CMKYFTNEECLKSHIRSCH---QHINCEICGSKHLKKNIKRHLRTHDE--DSSPGEIKCE 308
Query: 419 F--CDKQFKSKRNIRRHIEYTHMGMQRHKC--IECETLFKEKRSLRKHVRSKHPNS 470
C F N+++H++ H ++ C C F K HVR+KH NS
Sbjct: 309 VEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYK-----HVRNKHENS 359
Score = 35.5 bits (78), Expect = 0.11
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 143 CPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEE 202
C K + + + LK H+R+ H + CE C G++ L+ +++ H T DE+
Sbjct: 254 CMKYFTNEECLKSHIRSCH----QHINCEIC-----GSKHLKKNIKR-HL----RTHDED 299
Query: 203 SRVDR-RCE--DCDQTFPAEKLLRQHVKNVH 230
S +CE C TF L++H+K VH
Sbjct: 300 SSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 330
Score = 35.1 bits (77), Expect = 0.14
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 506 CHLCSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNETRHVNSAESSK 565
C C F L H+++ L ++C ++ +D + H T + K
Sbjct: 68 CQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPK 127
Query: 566 QKVLPRCILCMKDFSTRKTLKRHIKKFHEGFDADE 600
+ C +FS + + RH+KK+H + D+
Sbjct: 128 EN-------CKSEFSVQGNVGRHVKKYHSNDNRDK 155
Score = 31.5 bits (68), Expect = 1.7
Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 17/142 (11%)
Query: 388 CKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCI 447
C+ CG S Y + H++ H + + +R+ E H C
Sbjct: 22 CQYCGISRSKNYLITKHIQSHHQM-----------ELEEERDDEA-CEVDEESSSNHTCQ 69
Query: 448 ECETLFKEKRSLRKHVRSKHPNSALFPQCHI--CYKRFESAKSCKIHLKLLHAFNMDTFP 505
EC FK+ L++H++S H F C++ C + HL L H + P
Sbjct: 70 ECGAEFKKPAHLKQHMQS-HSLERSF-TCYVDDCAASYRRKDHLNRHL-LTHKGKLFKCP 126
Query: 506 CHLCSVSFGSDEALSIHLKTKH 527
C F + H+K H
Sbjct: 127 KENCKSEFSVQGNVGRHVKKYH 148
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 46.4 bits (105), Expect = 6e-05
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 25/196 (12%)
Query: 14 YVCDY--CNRIFTRKYNLQTHIENLHVNSS--CHCEVCGKRFGTTTGFHLH--LSAGHNR 67
++C Y C + F L+ H ++H C E CGK+F ++ H + G
Sbjct: 79 FLCSYDGCGKTFFDVSALRKH-SHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERN 137
Query: 68 YGQPLPECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTNERNLKRH 127
Y + + CG+ F+ N+ SHM T H Q C + Y +E LK H
Sbjct: 138 Y---ICTYEGCGKAFSLDFNLRSHMKT-HSQE-----NYHICPYSGCVKRYAHEYKLKNH 188
Query: 128 VDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRHL----TGEEQYRCEY--CNTVFKGNE 181
V +H G G PK + + R ++T + + Y C Y C +
Sbjct: 189 VAAYHEKNGG---GETPKYTPPAEKVLRTVKTPATVCGPSSDRPYACPYEGCEKAYIHEY 245
Query: 182 ELEAHVRSLHAGEVSE 197
+L+ H++ H G + E
Sbjct: 246 KLKLHLKREHPGHLQE 261
Score = 39.1 bits (87), Expect = 0.009
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 316 CSY--CDKLFTDVTSREFHTPIFHPQARTADPDTRPANRDGNSFKCVHCHRIYYSERSLK 373
CSY C K F DV++ H+ I + D ++G C + + LK
Sbjct: 81 CSYDGCGKTFFDVSALRKHSHIHGERQYVCD-------QEG-------CGKKFLDSSKLK 126
Query: 374 HHIKLKHSTDEAMEC--KSCGKICSNKYYLASHMKIVHSTNDWSKCDF--CDKQFKSKRN 429
H L H+ + C + CGK S + L SHMK HS ++ C + C K++ +
Sbjct: 127 RHY-LIHTGERNYICTYEGCGKAFSLDFNLRSHMK-THSQENYHICPYSGCVKRYAHEYK 184
Query: 430 IRRHIEYTH 438
++ H+ H
Sbjct: 185 LKNHVAAYH 193
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 46.0 bits (104), Expect = 8e-05
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 78 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTNERNLKRHVDMFHGVKGE 137
CG+ F + H + H++ E FCS+ +TNE LK H+ H +
Sbjct: 134 CGKAFKYPSQLQKHQDS-HVKLDSVEA---FCSEPGCMKYFTNEECLKSHIRSCH----Q 185
Query: 138 H-HCGLCPKVYLSNQSLKRHLRTR---HLTGEEQYRCEYCNTVFKGNEELEAHVRSLH 191
H +C +C +L +++KRHLRT GE + E C++ F L+ H++++H
Sbjct: 186 HINCEICGSKHL-KKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 2 NQNQNMSMSLLDYVCDY--CNRIFTRKYNLQTHIENLHVNSSCHCEVCG-KRFGTTTGFH 58
+Q+ ++ + ++ C C + FT + L++HI + H +CE+CG K H
Sbjct: 147 HQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCH--QHINCEICGSKHLKKNIKRH 204
Query: 59 LHLSAGHNRYGQPLPECDLCGRIFTRKQNIVSHMITVH 96
L + G+ E + C F++ N+ HM VH
Sbjct: 205 LRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242
Score = 40.7 bits (91), Expect = 0.003
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 358 KCVHCHRIY-YSERSLKH---HIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVHSTND 413
K + C + + Y + KH H+KL S + C K +N+ L SH++ H +
Sbjct: 130 KEIGCGKAFKYPSQLQKHQDSHVKLD-SVEAFCSEPGCMKYFTNEECLKSHIRSCHQHIN 188
Query: 414 WSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLRKHVRSKH----PN 469
C + KR++R H E + G + + C + F + +L+KH+++ H P
Sbjct: 189 CEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPF 248
Query: 470 SALFPQC 476
FP C
Sbjct: 249 VCGFPGC 255
Score = 38.3 bits (85), Expect = 0.015
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 362 CHRIYYSERSLKHHIKLKHSTDEAMECKSCGK--ICSN-KYYLASHMKIVHSTNDWSKCD 418
C + + +E LK HI+ H + + C+ CG + N K +L +H + S+ KC+
Sbjct: 166 CMKYFTNEECLKSHIRSCH---QHINCEICGSKHLKKNIKRHLRTHDE--DSSPGEIKCE 220
Query: 419 F--CDKQFKSKRNIRRHIEYTHMGMQRHKC--IECETLFKEKRSLRKHVRSKHPNS 470
C F N+++H++ H ++ C C F K HVR+KH NS
Sbjct: 221 VEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYK-----HVRNKHENS 271
Score = 35.5 bits (78), Expect = 0.11
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 143 CPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEE 202
C K + + + LK H+R+ H + CE C G++ L+ +++ H T DE+
Sbjct: 166 CMKYFTNEECLKSHIRSCH----QHINCEIC-----GSKHLKKNIKR-HL----RTHDED 211
Query: 203 SRVDR-RCE--DCDQTFPAEKLLRQHVKNVH 230
S +CE C TF L++H+K VH
Sbjct: 212 SSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 43.6 bits (98), Expect = 4e-04
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 75 CDLCGRIFTRKQNIVSHMITVHL-----QGLGNEIRCRF-------CSKTFTTGPYTNER 122
C++CG+ F R QN+ H +L Q E+R R C T +
Sbjct: 72 CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLT 131
Query: 123 NLKRHVDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEE 182
+K+H HG K + C C K Y K H +T G +YRC+ C T+F +
Sbjct: 132 GIKKHFCRKHGEK-KWKCEKCAKRYAVQSDWKAHSKT---CGTREYRCD-CGTIFSRRDS 186
Query: 183 LEAH 186
H
Sbjct: 187 FITH 190
Score = 34.3 bits (75), Expect = 0.25
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLH-LSAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H CE C KR+ + + H + G Y CD CG IF+R+ +
Sbjct: 133 IKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREY-----RCD-CGTIFSRRDS 186
Query: 88 IVSH 91
++H
Sbjct: 187 FITH 190
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 41.9 bits (94), Expect = 0.001
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 17/124 (13%)
Query: 75 CDLCGRIFTRKQNIVSHMITVHL-----QGLGNEIRCRF-------CSKTFTTGPYTNER 122
C++CG+ F R QN+ H +L Q E+R R C ++ +
Sbjct: 68 CEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLT 127
Query: 123 NLKRHVDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEE 182
+K+H HG K + C C K Y K H +T G +YRC+ C T+F +
Sbjct: 128 GIKKHFCRKHGEK-KWTCEKCAKRYAVQSDWKAHSKT---CGTREYRCD-CGTIFSRRDS 182
Query: 183 LEAH 186
H
Sbjct: 183 FITH 186
Score = 33.9 bits (74), Expect = 0.33
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLH-LSAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H CE C KR+ + + H + G Y CD CG IF+R+ +
Sbjct: 129 IKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREY-----RCD-CGTIFSRRDS 182
Query: 88 IVSH 91
++H
Sbjct: 183 FITH 186
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 40.7 bits (91), Expect = 0.003
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 443 RHKCIECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHLKL---LHAF 499
RH+C+ C +F + L +H++ + +S P+C +C K +S +S + HL + L
Sbjct: 16 RHRCVACYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKG 74
Query: 500 NMDTF----PCHLCSVSFGSDEALSIHLKTKHL 528
N C LC F AL+ H HL
Sbjct: 75 NCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHL 107
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 388 CKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEY-THMG------ 440
C +C K+ + + +L HMKI + + +C C K KS ++R H+ H+
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNCKA 78
Query: 441 -MQRHKCIECETLFKEKRSLRKHVRSKH 467
+ C C +F+E +L +H H
Sbjct: 79 IFTKRGCTLCLQIFEEAFALAEHKNKCH 106
Score = 31.1 bits (67), Expect = 2.3
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 358 KCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKI 407
+CV C++++ L H+K+ + + C C K C + + H+ +
Sbjct: 18 RCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNV 67
Score = 31.1 bits (67), Expect = 2.3
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 75 CDLCGRIFTRKQNIVSHM-ITVHLQGLGNEIRCRFCSKTFTTGPYTNER-NLKRHVDMFH 132
C C ++F R++++V HM I+ H ++ RC C K + E N+ H+ +
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSL---HQPRCGVCLKHCKSFESVREHLNVPDHLSKGN 75
Query: 133 --GVKGEHHCGLCPKVYLSNQSLKRHLRTRHLT 163
+ + C LC +++ +L H HL+
Sbjct: 76 CKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLS 108
Score = 29.5 bits (63), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 287 CNVCFERFYSKLSMAEHKRRC-LPPP 311
C +C + F ++AEHK +C L PP
Sbjct: 85 CTLCLQIFEEAFALAEHKNKCHLSPP 110
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 40.7 bits (91), Expect = 0.003
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 443 RHKCIECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHLKL---LHAF 499
RH+C+ C +F + L +H++ + +S P+C +C K +S +S + HL + L
Sbjct: 16 RHRCVACYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKG 74
Query: 500 NMDTF----PCHLCSVSFGSDEALSIHLKTKHL 528
N C LC F AL+ H HL
Sbjct: 75 NCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHL 107
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 388 CKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEY-THMG------ 440
C +C K+ + + +L HMKI + + +C C K KS ++R H+ H+
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNCKA 78
Query: 441 -MQRHKCIECETLFKEKRSLRKHVRSKH 467
+ C C +F+E +L +H H
Sbjct: 79 IFTKRGCTLCLQIFEEAFALAEHKNKCH 106
Score = 31.1 bits (67), Expect = 2.3
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 358 KCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKI 407
+CV C++++ L H+K+ + + C C K C + + H+ +
Sbjct: 18 RCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNV 67
Score = 31.1 bits (67), Expect = 2.3
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 75 CDLCGRIFTRKQNIVSHM-ITVHLQGLGNEIRCRFCSKTFTTGPYTNER-NLKRHVDMFH 132
C C ++F R++++V HM I+ H ++ RC C K + E N+ H+ +
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSL---HQPRCGVCLKHCKSFESVREHLNVPDHLSKGN 75
Query: 133 --GVKGEHHCGLCPKVYLSNQSLKRHLRTRHLT 163
+ + C LC +++ +L H HL+
Sbjct: 76 CKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLS 108
Score = 29.5 bits (63), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 287 CNVCFERFYSKLSMAEHKRRC-LPPP 311
C +C + F ++AEHK +C L PP
Sbjct: 85 CTLCLQIFEEAFALAEHKNKCHLSPP 110
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 39.5 bits (88), Expect = 0.007
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEK--RSLRKHVRSKHPNSALFP 474
C C K FK N+R H+ + + + T +K SL+KH S + +
Sbjct: 219 CQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKGGYSLKKHYYSCPQHGCRWN 278
Query: 475 QCHICYKRFESAKSCKIHLKLLHAFNMDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQIY 534
Q H ++ +S K H K H M + C CSV S + KH D +
Sbjct: 279 QRHEKFQPLKSVICAKNHYKRSHCPKM--YMCRRCSVKHFS-VLSDLRTHEKH-CGDIKW 334
Query: 535 KCEECNLVFKGQDKFDAHNE--TRHVNSAESSK 565
C C F +DK +H HV + SSK
Sbjct: 335 VC-SCGTKFSRKDKLMSHVSLFLGHVPAHGSSK 366
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 39.1 bits (87), Expect = 0.009
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 10 SLLDYVCDYCNRIFTRKYNLQTHIENLH---VNSSC---HCEVCGKRFGTTTGFHLHLSA 63
S + C C F R+ L+ H+E H C C CG FG +H+ A
Sbjct: 492 SFSGFACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVHVQA 551
Query: 64 GHNRYGQPL---PECDLCGRIFTRKQNIVSHMITV-----HLQGLGNEIRCRFCSKTFTT 115
H + L EC+L F++K S I V + G+ ++ C+FC F
Sbjct: 552 VHPSECKSLTVASECNLTNGEFSQKPEAGSSQIVVSQNNENTSGV-HKFVCKFCGLKFNL 610
Query: 116 GPYTNERNLKRHV 128
P + H+
Sbjct: 611 LPDLGRHHQAEHM 623
Score = 35.1 bits (77), Expect = 0.14
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKC-----IECETLFKEKRSLRKHVRSKHPNS- 470
C C F ++ + H+E H KC I C + F +K L HV++ HP+
Sbjct: 498 CAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVHVQAVHPSEC 557
Query: 471 ---ALFPQCHICYKRFESAKSCKIHLKLLHAFNMDT-----FPCHLCSVSFGSDEALSIH 522
+ +C++ F ++ N +T F C C + F L H
Sbjct: 558 KSLTVASECNLTNGEFSQKPEAGSSQIVVSQNNENTSGVHKFVCKFCGLKFNLLPDLGRH 617
Query: 523 LKTKHL 528
+ +H+
Sbjct: 618 HQAEHM 623
Score = 34.7 bits (76), Expect = 0.19
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 342 TADPDTRPANRDGNSFKCVHCHRIYYSERSLKHHIKLKHSTDEA-----MECKSCGKICS 396
T D D + F C C + + L+ H++ +H A ++C CG
Sbjct: 481 TCDDDDDKEKWSFSGFACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFG 540
Query: 397 NKYYLASHMKIVH-----STNDWSKCDFCDKQFKSKRN-------IRRHIEYTHMGMQRH 444
+K L H++ VH S S+C+ + +F K + ++ E T G+ +
Sbjct: 541 DKEQLLVHVQAVHPSECKSLTVASECNLTNGEFSQKPEAGSSQIVVSQNNENT-SGVHKF 599
Query: 445 KCIECETLFKEKRSLRKHVRSKHPNSAL 472
C C F L +H +++H +L
Sbjct: 600 VCKFCGLKFNLLPDLGRHHQAEHMGPSL 627
Score = 30.7 bits (66), Expect = 3.1
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 504 FPCHLCSVSFGSDEALSIHLKTKHLVE----DQIYKCEECNLVFKGQDKFDAHNETRHVN 559
F C +C SF + L IH++ +H V+ + +C C F +++ H + V+
Sbjct: 496 FACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVH--VQAVH 553
Query: 560 SAESSKQKVLPRCILCMKDFSTR 582
+E V C L +FS +
Sbjct: 554 PSECKSLTVASECNLTNGEFSQK 576
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 140 CGLCPKVYLSNQSLKRHLRTRHLTGEEQ----YRCEYCNTVFKGNEELEAHVRSLHAGEV 195
C +C ++ + L+ H+ RH + +C C + F E+L HV+++H E
Sbjct: 498 CAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVHVQAVHPSEC 557
Query: 196 SETT 199
T
Sbjct: 558 KSLT 561
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 39.1 bits (87), Expect = 0.009
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 446 CIECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHLKLLHAFNMDTFP 505
C C+ F +++ L +H ++KH F +CH+C+K+ +A IH+ +H N+ P
Sbjct: 14 CYYCDREFDDEKILVQHQKAKH-----F-KCHVCHKKLSTASGMVIHVLQVHKENVTKVP 67
Score = 32.7 bits (71), Expect = 0.76
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 16 CDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPEC 75
C YC+R F + L H + H C VC K+ T +G +H+ H +P
Sbjct: 14 CYYCDREFDDEKILVQHQKAKHFK----CHVCHKKLSTASGMVIHVLQVHKENVTKVPNA 69
Query: 76 ----DLCGRIFTRKQNIVSHMITVH 96
D Q I H++T H
Sbjct: 70 KDGRDSTDIEIYGMQGIPPHVLTAH 94
Score = 29.9 bits (64), Expect = 5.3
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 359 CVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVHSTN 412
C +C R + E+ L H K KH +C C K S + H+ VH N
Sbjct: 14 CYYCDREFDDEKILVQHQKAKH-----FKCHVCHKKLSTASGMVIHVLQVHKEN 62
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 37.9 bits (84), Expect = 0.020
Identities = 79/402 (19%), Positives = 155/402 (38%), Gaps = 56/402 (13%)
Query: 20 NRIFTRKYNLQTHIENLHVNSSCH-CEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLC 78
+ ++ RK LQ E+ +SSC+ C+VCGK FG G H + + D
Sbjct: 78 SEVYPRKSKLQKRPES---SSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDEN 134
Query: 79 GRI-FTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTNE----RNLKRHVDMFHG 133
+ + + IVS + + + C + F+ P ++ L+ +
Sbjct: 135 SLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSE-PLSHSGALPSTLRSKLQTKTQ 193
Query: 134 VKGEHHCGLCPKVYLSNQSLKRHLRT-RHLTG----EEQYRCEY--------CNTVFK-- 178
K HC +C K ++ +Q L H R R ++G + +Y +Y + K
Sbjct: 194 WKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKP 253
Query: 179 GNEELEAHVRSLHAGEVSETTDE---ESRVDRRCEDCDQTFPAEKLLRQHVKNVHTFSAF 235
+ E+ + LH E+ + E S D+ C ++ +K+ R++ K + S F
Sbjct: 254 SSFEVSQEEKILHCVELKQDFGELLAHSGFDKSI-SCSKSIKVKKVARKNEKTEDSTSLF 312
Query: 236 YKYCKDSLTKRAAGVPKELYHCESCREGFITVYELKTHMRI---THD-------IEYSWS 285
+ + + + L+ C++C F T+ + H R+ H+ +E W
Sbjct: 313 GVFVGE--------MSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWG 364
Query: 286 ------TCNV-CFERFYSKLSMAEHKRRCLPPPDAKACSYCDKL--FTDVTSREFHTPIF 336
C+V F+RF MAE ++ + C + F +++
Sbjct: 365 LKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFM 424
Query: 337 HPQARTADPDTRPANRDGNSFKCVHCHRIYYSERSLKHHIKL 378
+ + + + +S+KC C + + ++L H +L
Sbjct: 425 DLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRL 466
Score = 29.9 bits (64), Expect = 5.3
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 444 HKCIECETLFKEKRSLRKHVR---------SKHPNSALFPQCHICYKRFESAKSCKIHLK 494
HKC C F+ ++L H R SK S ++P+ KR ES+ SC
Sbjct: 43 HKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSC----- 97
Query: 495 LLHAFNMDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNE 554
+ C +C FG L H K + ++ ++ N + D +A
Sbjct: 98 ---------YECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLL---DSSEAKKI 145
Query: 555 TRHVNSAESSKQKVLPRCILCMKDFS 580
+S + S+++ C+ +DFS
Sbjct: 146 VSQPSSFKVSQEEKFLHCVELKQDFS 171
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 35.9 bits (79), Expect = 0.081
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 372 LKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVHSTN--DWSKCDFCDKQFKSKRN 429
LK + K S E + CK C K+ + Y +I H ++ DW CD CD ++ +
Sbjct: 322 LKSLKRTKDSQPEELLCKHCSKLRKSNQYCGICKRIWHPSDDGDWVCCDGCDVWVHAECD 381
Query: 430 IRRHIEYTHMGMQRHKCIECE 450
+ + + + C +C+
Sbjct: 382 NITNERFKELEHNNYYCPDCK 402
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 35.9 bits (79), Expect = 0.081
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 75 CDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTNERNLKRH--VDMFH 132
C LC T +Q+ +H+ Q NE+ SK + P ++ NL + +D++
Sbjct: 87 CSLCNATMTCEQDYFAHVYGKKHQEKANEVADMDYSKQQSEHPAVDKNNLTQQPDLDIYV 146
Query: 133 GVKGEH--HCGLCPKVYLSNQSLKRHLR-TRHLTGEEQYRCE 171
G+ ++ C LC S Q+L H +H E++ E
Sbjct: 147 GLSNDYPWFCSLCDINATSEQTLLAHANGKKHRVKVERFDAE 188
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 35.5 bits (78), Expect = 0.11
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHL-SAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H CE C K++ + + H + G Y +CD CG +F+RK +
Sbjct: 146 IKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREY-----KCD-CGTLFSRKDS 199
Query: 88 IVSH 91
++H
Sbjct: 200 FITH 203
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 153 LKRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVRS 189
+K+H +H GE++++CE C+ + + +AH ++
Sbjct: 146 IKKHYSRKH--GEKKWKCEKCSKKYAVQSDWKAHAKT 180
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 415 SKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLRKHVRSKHP-----N 469
+KC C +QF K ++ H+ ++ + C C + SLR+H+ P N
Sbjct: 6 NKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQECKN 65
Query: 470 SALFPQCHICYKRFESAKSCKIH 492
C C ES + +IH
Sbjct: 66 IFSIRGCRFCLTILESPNARRIH 88
Score = 34.3 bits (75), Expect = 0.25
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 443 RHKCIECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHL 493
R+KC C F +K L +H+R + +S P C IC K S S + HL
Sbjct: 5 RNKCGGCYRQFNKKEHLVEHMRISY-HSVHEPTCGICNKHCRSFDSLREHL 54
Score = 32.7 bits (71), Expect = 0.76
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 387 ECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHI 434
+C C + + K +L HM+I + + C C+K +S ++R H+
Sbjct: 7 KCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHL 54
Score = 31.9 bits (69), Expect = 1.3
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 257 CESCREGFITVYELKTHMRITHDIEYSWSTCNVCFERFYSKLSMAEHKRRCLPPPDAK-- 314
C C F L HMRI++ + TC +C + S S+ EH LP + K
Sbjct: 8 CGGCYRQFNKKEHLVEHMRISYHSVHE-PTCGICNKHCRSFDSLREHLIGPLPKQECKNI 66
Query: 315 ----ACSYCDKLFTDVTSREFH 332
C +C + +R H
Sbjct: 67 FSIRGCRFCLTILESPNARRIH 88
Score = 29.5 bits (63), Expect = 7.1
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 358 KCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHM 405
KC C+R + + L H+++ + + C C K C + L H+
Sbjct: 7 KCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHL 54
>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 427
Score = 35.1 bits (77), Expect = 0.14
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 20/184 (10%)
Query: 327 TSREFHTPIFHPQARTADPDTRPANRDGNSFKCVHCHRIY--YSERSLKHHIKLKHSTDE 384
T E P ++P R PD+ P GN + + ++ ++E + H K
Sbjct: 84 TVGELGFPYWNPIRRRFPPDS-PFFASGNVERELLAKQVTLDFTEDEINHLHKFVEIETR 142
Query: 385 AMECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTH------ 438
+ C G C + H + ++ + C C + + + R + HI H
Sbjct: 143 RISCPIVG--CPERLKSLDHFEDHYNARHTASCSVCSRVYPTSRLLSIHISEAHDSFFQA 200
Query: 439 ---MGMQRHKCI--ECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHL 493
G ++C+ C FK ++ +H+ KH FP +K+ + +K + L
Sbjct: 201 KVSRGYDMYECLVEGCGLKFKTYKARHRHLIDKHK----FPTTFEFFKKTQLSKKRREKL 256
Query: 494 KLLH 497
+ H
Sbjct: 257 QRQH 260
Score = 29.9 bits (64), Expect = 5.3
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 143 CPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVRSLHAGEV-SETTDE 201
CP+ S + H RH C C+ V+ + L H+ H ++ +
Sbjct: 151 CPERLKSLDHFEDHYNARHTAS-----CSVCSRVYPTSRLLSIHISEAHDSFFQAKVSRG 205
Query: 202 ESRVDRRCEDCDQTFPAEKLLRQHVKNVHTFSAFYKYCKDS-LTKR 246
+ E C F K +H+ + H F +++ K + L+K+
Sbjct: 206 YDMYECLVEGCGLKFKTYKARHRHLIDKHKFPTTFEFFKKTQLSKK 251
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 35.1 bits (77), Expect = 0.14
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 257 CESCREGFITVYELKTHMRITHDIEYSWSTCNVCFERFYSKLSMAEHKRRCLPPPDAK-- 314
C +C F + L HM+I++ + TC VC + S S+ EH LP + K
Sbjct: 17 CAACYRQFNKLEHLVEHMKISYHSGHE-PTCGVCKKHCRSFESLREHLIGPLPKQECKNI 75
Query: 315 ----ACSYCDKLFTDVTSREFH 332
C +C + SR H
Sbjct: 76 FSLRGCRFCMTILESPNSRRIH 97
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 415 SKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLRKHVRSKHP-----N 469
+KC C +QF ++ H++ ++ C C+ + SLR+H+ P N
Sbjct: 15 NKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHLIGPLPKQECKN 74
Query: 470 SALFPQCHICYKRFESAKSCKIH 492
C C ES S +IH
Sbjct: 75 IFSLRGCRFCMTILESPNSRRIH 97
Score = 32.7 bits (71), Expect = 0.76
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 387 ECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHI 434
+C +C + + +L HMKI + + C C K +S ++R H+
Sbjct: 16 KCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHL 63
Score = 32.3 bits (70), Expect = 1.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 443 RHKCIECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHL 493
R+KC C F + L +H++ + +S P C +C K S +S + HL
Sbjct: 14 RNKCAACYRQFNKLEHLVEHMKISY-HSGHEPTCGVCKKHCRSFESLREHL 63
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 358 KCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHM 405
KC C+R + L H+K+ + + C C K C + L H+
Sbjct: 16 KCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHL 63
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 35.1 bits (77), Expect = 0.14
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 29 LQTHIENLH-VNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H V+ CE C K + + + HL +R G CD CGR+F+R ++
Sbjct: 104 IKKHFRRKHSVHKQWVCERCSKGYAVQSDYKAHLKTCGSR-GH---SCD-CGRVFSRVES 158
Query: 88 IVSHMIT 94
+ H T
Sbjct: 159 FIEHQDT 165
Score = 33.5 bits (73), Expect = 0.43
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 20/156 (12%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKR--SLRKHVR-SKHPNSALF 473
C+ C++ F+ +N++ H +RHK + + L ++K+ +RK V P
Sbjct: 41 CEICNQGFQRDQNLQMH-------RRRHK-VPWKLLKRDKKDEEVRKRVYVCPEPTCLHH 92
Query: 474 PQCHICYKRFESAKSCKIHLKLLHAFNMDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQI 533
CH K H + H+ + + C CS + HLKT +
Sbjct: 93 DPCH----ALGDLVGIKKHFRRKHSVHKQ-WVCERCSKGYAVQSDYKAHLKT---CGSRG 144
Query: 534 YKCEECNLVFKGQDKFDAHNETRHVNSAESSKQKVL 569
+ C +C VF + F H +T + + + + L
Sbjct: 145 HSC-DCGRVFSRVESFIEHQDTCTIRQPQPTNHRHL 179
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 124 LKRHVDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEEL 183
+K+H H V + C C K Y K HL+T G + C+ C VF E
Sbjct: 104 IKKHFRRKHSVHKQWVCERCSKGYAVQSDYKAHLKT---CGSRGHSCD-CGRVFSRVESF 159
Query: 184 EAH 186
H
Sbjct: 160 IEH 162
Score = 30.7 bits (66), Expect = 3.1
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 209 CEDCDQTFPAEKLLRQHVKNVHTFSAFYKYCK--DSLTKRAAGVPK-ELYHCESCREGFI 265
CE C+Q F ++ L+ H + K K + + KR P+ H + C
Sbjct: 41 CEICNQGFQRDQNLQMHRRRHKVPWKLLKRDKKDEEVRKRVYVCPEPTCLHHDPC-HALG 99
Query: 266 TVYELKTHMRITHDIEYSWSTCNVCFERFYSKLSMAEHKRRCLPPPDAKACSYCDKLFTD 325
+ +K H R H + W C C + + + H + C +C C ++F+
Sbjct: 100 DLVGIKKHFRRKHSVHKQW-VCERCSKGYAVQSDYKAHLKTC--GSRGHSCD-CGRVFSR 155
Query: 326 VTS 328
V S
Sbjct: 156 VES 158
Score = 29.5 bits (63), Expect = 7.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 14 YVCDYCNRIFTRKYNLQTH 32
YVC+ CN+ F R NLQ H
Sbjct: 39 YVCEICNQGFQRDQNLQMH 57
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 34.7 bits (76), Expect = 0.19
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 19/154 (12%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKE-KRSLRKHVR-SKHPNSALFP 474
C+ C++ F+ +N++ H +RHK + + L +E +RK V P
Sbjct: 72 CEICNQGFQRDQNLQMH-------RRRHK-VPWKLLKRETNEEVRKRVYVCPEPTCLHHN 123
Query: 475 QCHICYKRFESAKSCKIHLKLLHAFNMDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQIY 534
CH K H + H+ N + C CS + HLKT + +
Sbjct: 124 PCH----ALGDLVGIKKHFRRKHS-NHKQWICERCSKGYAVQSDYKAHLKT---CGTRGH 175
Query: 535 KCEECNLVFKGQDKFDAHNETRHVNSAESSKQKV 568
C +C VF + F H +T V ++ S ++
Sbjct: 176 SC-DCGRVFSRVESFIEHQDTCTVRRSQPSNHRL 208
Score = 34.3 bits (75), Expect = 0.25
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 29 LQTHIENLHVN-SSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H N CE C K + + + HL R G CD CGR+F+R ++
Sbjct: 134 IKKHFRRKHSNHKQWICERCSKGYAVQSDYKAHLKTCGTR-GH---SCD-CGRVFSRVES 188
Query: 88 IVSHMIT 94
+ H T
Sbjct: 189 FIEHQDT 195
Score = 29.5 bits (63), Expect = 7.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 14 YVCDYCNRIFTRKYNLQTH 32
YVC+ CN+ F R NLQ H
Sbjct: 70 YVCEICNQGFQRDQNLQMH 88
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 34.7 bits (76), Expect = 0.19
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 34/170 (20%)
Query: 45 EVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQNIVSHM------ITVHLQ 98
EVCGKRF + +H+ G ++ C +C + F R N+ HM
Sbjct: 159 EVCGKRFWIPSPAQIHV--GPMQFA-----CSICSKTFNRYNNMQMHMWGHGSEFRKGAD 211
Query: 99 GLGNEIR--------CRFCSKTFTTG-------PYTNERNLKRHVDMFHGVKGEHHCGLC 143
L I+ C C++ P + R L+ H HG K CG C
Sbjct: 212 SLKGTIQPAAILRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSK-PFSCGKC 270
Query: 144 PKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVRSLHAG 193
K ++K RT + + C C + FK L+ H+RS +G
Sbjct: 271 GKAL----AVKGDWRTHEKNCGKLWYCT-CGSDFKHKRSLKDHIRSFGSG 315
Score = 32.7 bits (71), Expect = 0.76
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 401 LASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLR 460
L +H K H + +S C C K K + R H + + G + C C + FK KRSL+
Sbjct: 252 LQTHYKRKHGSKPFS-CGKCGKALAVKGDWRTHEK--NCGKLWY-CT-CGSDFKHKRSLK 306
Query: 461 KHVRSKHPNSALFPQCHICYKRFESAKSC 489
H+RS S P + + FE C
Sbjct: 307 DHIRSF--GSGHSPHPSLLFDGFEEDTEC 333
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 34.3 bits (75), Expect = 0.25
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 74 ECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTN------ERNLKRH 127
ECD C ++F Q + H T H +++ F +K T P +++ +
Sbjct: 149 ECDGCKKVFGSHQALGGHRAT-H-----KDVKGCFANKNITEDPPPPPPQEIVDQDKGKS 202
Query: 128 VDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQ 167
V + G+ H C +C +V+ S Q+L H+R +E+
Sbjct: 203 VKLVSGMN--HRCNICSRVFSSGQALGGHMRCHWEKDQEE 240
>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 329
Score = 34.3 bits (75), Expect = 0.25
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 158 RTRHLTGEEQ--YRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEESRVDRRCEDC 212
RT L E+ Y C CN VF +++ AH+ S + E SE ++ R + + C
Sbjct: 232 RTHSLPYEKYGPYTCPKCNGVFNTSQKFAAHMSSHYKNETSEEREQRIRAKNKRKFC 288
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 534 YKCEECNLVFKGQDKFDAHNETRHVN-SAESSKQKV 568
Y C +CN VF KF AH + + N ++E +Q++
Sbjct: 244 YTCPKCNGVFNTSQKFAAHMSSHYKNETSEEREQRI 279
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 34.3 bits (75), Expect = 0.25
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLH-LSAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H CE C KR+ + + H + G Y CD CG IF+R+ +
Sbjct: 146 IKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEY-----RCD-CGTIFSRRDS 199
Query: 88 IVSH 91
++H
Sbjct: 200 YITH 203
Score = 30.3 bits (65), Expect = 4.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 14 YVCDYCNRIFTRKYNLQTH 32
++CD CN+ F R+ NLQ H
Sbjct: 83 FICDVCNKGFQREQNLQLH 101
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 34.3 bits (75), Expect = 0.25
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 165 EEQYRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEESRVDRRCEDCDQTFPAEKLLRQ 224
E ++ C++C+ F + L H+R+ H E S +DE+ + D + + LR+
Sbjct: 6 ERKFVCKFCSKRFPCGKSLGGHIRT-HMNENSADSDEDEADKLKMID-ENGGQSSYGLRE 63
Query: 225 HVKNVHTFSAFYKYCKDSLTKRAAGVPKELYHCESCREGFITVYELKTHM 274
+ K F ++ ++ +EL C C +GF++ L HM
Sbjct: 64 NPKKNKRF-VDHRQIMALKQQQQQQQLQELRRCRECGKGFVSSKALCGHM 112
Score = 29.9 bits (64), Expect = 5.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 138 HHCGLCPKVYLSNQSLKRHLRTRHLTGEEQYR 169
H C +C +V+ S Q+L H R+ H G +++R
Sbjct: 399 HECPICFRVFKSGQALGGHKRS-HFIGNQEHR 429
>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles:PF05495 CHY zinc
finger, PF00097 zinc finger, C3HC4 type (RING finger)
Length = 291
Score = 33.9 bits (74), Expect = 0.33
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 11/147 (7%)
Query: 154 KRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVR-SLHAGEVSET----TDEESRVDRR 208
+R + R +E + C +C+ K + +E H R L EVS+ + E V +
Sbjct: 31 RRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHELPRHEVSKVICSLCETEQDVQQN 90
Query: 209 CEDCDQTFPAEKLLRQHVKNVHTFSAFYKYCKDSLTKRAAGVPKELYHCESCREGFITVY 268
C +C K K + +Y D G + +HC+ CR + +
Sbjct: 91 CSNCGVCM--GKYFCSKCKFFDDDLSKKQYHCDECGICRTGGEENFFHCKRCRCCYSKIM 148
Query: 269 ELKTHMRITHDIEYSWSTCNVCFERFY 295
E K H + + ++ C VCFE +
Sbjct: 149 EDK-HQCVEGAMHHN---CPVCFEYLF 171
>At1g60640.1 68414.m06826 expressed protein
Length = 340
Score = 33.9 bits (74), Expect = 0.33
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 168 YRCEYCNTVFKGNEE-LEAHVRS-LHAGEVSETTDEESRVDRRCEDCDQTFPAEKLLRQH 225
Y+C YC TV NE ++AHV S HA + + R D D +T EK + +
Sbjct: 115 YKCRYCPTVVCLNENTMQAHVSSKKHARMEKLVKEGKIRTDDEEVDDLETASQEKEKKGN 174
Query: 226 VKNVHTFSAFYKYCKDSLTK 245
++ K KDSLTK
Sbjct: 175 RRSQRQGKRSQKQEKDSLTK 194
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 33.9 bits (74), Expect = 0.33
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 347 TRPANRDGNSFKCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMK 406
T+ A + FKC C +++ S ++L H K HS +A + ++ G K + K
Sbjct: 183 TQTAPPKSDLFKCSICEKVFTSYQALGGH-KASHSI-KAAQLENAGADAGEK----TRSK 236
Query: 407 IVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMG-MQRHKCIECETLFKEKRSLRKHVRS 465
++ + KCD C F + + + H + G + HK E + K + K V +
Sbjct: 237 MLSPSGKIHKCDICHVLFPTGQALGGHKRRHYEGLLGGHKRGNDEAVLKLSPNSNKSVVT 296
Query: 466 K 466
K
Sbjct: 297 K 297
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 33.5 bits (73), Expect = 0.43
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQNI 88
++ H H C+ C K++ + + H +R + CD CG +F+RK +
Sbjct: 70 IKKHFSRKHGEKKWKCDKCSKKYAVISDWKAHNKICGSREFR----CD-CGTLFSRKDSF 124
Query: 89 VSH 91
+SH
Sbjct: 125 ISH 127
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 33.5 bits (73), Expect = 0.43
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 370 RSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRN 429
R+L+ H K KH M C+ CGK + + +H K + W C C FK KR+
Sbjct: 286 RTLQTHYKRKHGIKPFM-CRKCGKAFAVRGDWRTHEK--NCGKLWY-C-ICGSDFKHKRS 340
Query: 430 IRRHIE 435
++ HI+
Sbjct: 341 LKDHIK 346
Score = 30.7 bits (66), Expect = 3.1
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 519 LSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNETRHVNSAESSKQKVLPRCILCMKD 578
L H K KH ++ + C +C F + + H + N + L CI C D
Sbjct: 288 LQTHYKRKHGIKP--FMCRKCGKAFAVRGDWRTHEK----NCGK------LWYCI-CGSD 334
Query: 579 FSTRKTLKRHIKKFHEGFDADELASF 604
F +++LK HIK F G A + F
Sbjct: 335 FKHKRSLKDHIKAFGNGHGAYGIDGF 360
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 33.5 bits (73), Expect = 0.43
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 389 KSCGKICSNKYYLASHMKIVHSTNDWSKCDF--CDKQFKSKRNIRRHIEYTHMGMQRHKC 446
K CGK + YL H + VHS + KC + C FK + HI H G + + C
Sbjct: 1265 KGCGKNFFSHKYLVQHQR-VHSDDRPLKCPWKGCKMTFKWAWSRTEHIR-VHTGARPYVC 1322
Query: 447 IE--CETLFKEKRSLRKHVR 464
E C F+ +H R
Sbjct: 1323 AEPDCGQTFRFVSDFSRHKR 1342
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 33.5 bits (73), Expect = 0.43
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLS-AGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H C+ C K++ + + H G Y CD CG +F+RK +
Sbjct: 132 IKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEY-----RCD-CGTLFSRKDS 185
Query: 88 IVSH 91
++H
Sbjct: 186 FITH 189
Score = 29.1 bits (62), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 6 NMSMSLLDYVCDYCNRIFTRKYNLQTH 32
N M+ ++C+ CN+ F R NLQ H
Sbjct: 60 NSLMTTNRFICEVCNKGFKRDQNLQLH 86
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 33.5 bits (73), Expect = 0.43
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 29 LQTHIENLHVN-SSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H N CE C K + + + HL R G CD CGR+F+R ++
Sbjct: 131 IKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTR-GH---SCD-CGRVFSRVES 185
Query: 88 IVSH 91
+ H
Sbjct: 186 FIEH 189
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 14 YVCDYCNRIFTRKYNLQTH 32
Y+C+ CN+ F R NLQ H
Sbjct: 67 YICEICNQGFQRDQNLQMH 85
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 33.5 bits (73), Expect = 0.43
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHL-SAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H CE C K++ + + H + G Y +CD CG +F+R+ +
Sbjct: 156 IKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEY-----KCD-CGTLFSRRDS 209
Query: 88 IVSH 91
++H
Sbjct: 210 FITH 213
>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 405
Score = 33.1 bits (72), Expect = 0.57
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 417 CDFCDKQFKSK--RNIRRHIEYTHMGMQRHKCIE---CETLFKEKRSLRKHVRSKHPNSA 471
C+ C+ +FK + RN+ ++ ++R E LF+ ++S ++K +
Sbjct: 6 CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNKSNEAP 65
Query: 472 LFPQCHICYKRFESAKSCKIHLK 494
+ C IC K + S+K+ + HL+
Sbjct: 66 MLYTCAICAKGYRSSKAHEQHLQ 88
Score = 29.1 bits (62), Expect = 9.3
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 501 MDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNETRHVNS 560
M C+ C++ F +E ++H K+ K + + + F+A
Sbjct: 1 MPGLTCNACNMEFKDEEERNLHYKSDW--HRYNLKRKVAGVPGVTEALFEARQSALAQEK 58
Query: 561 AESSKQKVLPRCILCMKDFSTRKTLKRHIK 590
+S++ +L C +C K + + K ++H++
Sbjct: 59 NKSNEAPMLYTCAICAKGYRSSKAHEQHLQ 88
>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 404
Score = 33.1 bits (72), Expect = 0.57
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 417 CDFCDKQFKSK--RNIRRHIEYTHMGMQRHKCIE---CETLFKEKRSLRKHVRSKHPNSA 471
C+ C+ +FK + RN+ ++ ++R E LF+ ++S ++K +
Sbjct: 6 CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNKSNEAP 65
Query: 472 LFPQCHICYKRFESAKSCKIHLK 494
+ C IC K + S+K+ + HL+
Sbjct: 66 MLYTCAICAKGYRSSKAHEQHLQ 88
Score = 29.1 bits (62), Expect = 9.3
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 501 MDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNETRHVNS 560
M C+ C++ F +E ++H K+ K + + + F+A
Sbjct: 1 MPGLTCNACNMEFKDEEERNLHYKSDW--HRYNLKRKVAGVPGVTEALFEARQSALAQEK 58
Query: 561 AESSKQKVLPRCILCMKDFSTRKTLKRHIK 590
+S++ +L C +C K + + K ++H++
Sbjct: 59 NKSNEAPMLYTCAICAKGYRSSKAHEQHLQ 88
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 33.1 bits (72), Expect = 0.57
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHL-SAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H C+ C KR+ + + H + G Y CD CG IF+R+ +
Sbjct: 145 IKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEY-----RCD-CGTIFSRRDS 198
Query: 88 IVSH 91
++H
Sbjct: 199 YITH 202
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 32.7 bits (71), Expect = 0.76
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 118 YTNERNLKRHVDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRH 161
Y ++ + K HVD+F E CG C K + + L +H TRH
Sbjct: 90 YRDQEHHKVHVDVF-----EWKCGYCKKSFNDEKFLDKHFSTRH 128
Score = 29.9 bits (64), Expect = 5.3
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 389 KSCGKICSNKYYL-ASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQR---H 444
K+C N Y H K+ +W KC +C K F ++ + +H H +
Sbjct: 79 KNCRLHPDNDLYRDQEHHKVHVDVFEW-KCGYCKKSFNDEKFLDKHFSTRHYNLLNTTDT 137
Query: 445 KCIE--CETLFKEKRSLRKHVRSKHPNSALFPQCHIC 479
KC+ C L + K +SK A+ H+C
Sbjct: 138 KCLADLCGALHCDFVLSSKKPKSKCNPPAVAKNRHLC 174
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 32.7 bits (71), Expect = 0.76
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 401 LASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLR 460
+ H H W KCD C K++ + + + H + G + ++C +C TLF + S
Sbjct: 163 IKKHFCRKHGEKKW-KCDKCSKKYAVQSDCKAHSK--TCGTKEYRC-DCGTLFSRRDSFI 218
Query: 461 KH 462
H
Sbjct: 219 TH 220
Score = 30.7 bits (66), Expect = 3.1
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 506 CHLCSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNETRHVNSAESSK 565
C CS + H KT E Y+C+ C +F +D F H + E+++
Sbjct: 178 CDKCSKKYAVQSDCKAHSKTCGTKE---YRCD-CGTLFSRRDSFITHRAFCEALAEETAR 233
Query: 566 QKVLPR 571
+ V+P+
Sbjct: 234 EVVIPQ 239
Score = 29.9 bits (64), Expect = 5.3
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHL-SAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H C+ C K++ + H + G Y CD CG +F+R+ +
Sbjct: 163 IKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHSKTCGTKEY-----RCD-CGTLFSRRDS 216
Query: 88 IVSH 91
++H
Sbjct: 217 FITH 220
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 32.7 bits (71), Expect = 0.76
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHL-SAGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H C+ C KR+ + + H + G Y CD CG +F+R+ +
Sbjct: 144 IKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEY-----RCD-CGTLFSRRDS 197
Query: 88 IVSH 91
++H
Sbjct: 198 FITH 201
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 32.3 bits (70), Expect = 1.0
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLS-AGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H CE C K++ + + H G Y +CD CG +F+R+ +
Sbjct: 124 IKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEY-----KCD-CGTLFSRRDS 177
Query: 88 IVSH 91
++H
Sbjct: 178 FITH 181
>At4g08460.2 68417.m01397 expressed protein
Length = 274
Score = 32.3 bits (70), Expect = 1.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEK-RSLRKHVRSKHPNS---AL 472
C C Q K + + +Y + ++ C+ E LF R L+KHV+ HP + A+
Sbjct: 107 CPLCRGQVKGWTVVEKERKY--LNSKKRSCMNDECLFYGSYRQLKKHVKENHPRAKPRAI 164
Query: 473 FPQCHICYKRFE 484
P +K+ E
Sbjct: 165 DPVLEAKWKKLE 176
>At4g08460.1 68417.m01396 expressed protein
Length = 274
Score = 32.3 bits (70), Expect = 1.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEK-RSLRKHVRSKHPNS---AL 472
C C Q K + + +Y + ++ C+ E LF R L+KHV+ HP + A+
Sbjct: 107 CPLCRGQVKGWTVVEKERKY--LNSKKRSCMNDECLFYGSYRQLKKHVKENHPRAKPRAI 164
Query: 473 FPQCHICYKRFE 484
P +K+ E
Sbjct: 165 DPVLEAKWKKLE 176
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 32.3 bits (70), Expect = 1.0
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 26/114 (22%)
Query: 104 IRCRFCSKTFTTGPYTNERNLKRHVDMFHGVKGE-------HHCGLC---PKVYLSNQSL 153
+ C C KT R+ ++ + +KG H CGLC K+++ Q L
Sbjct: 108 LSCGVCDKTEDKPREGGPRHHRQRIKSVEQLKGHLYHKHKLHMCGLCLEGRKIFICEQKL 167
Query: 154 ------KRHLRT--RHLTGEEQYR--------CEYCNTVFKGNEELEAHVRSLH 191
+H++T + G E R CE+C F G+ EL H+ + H
Sbjct: 168 YTRAQLNQHIQTGDSEVDGSESERGGFAGHPMCEFCRNPFYGDNELYTHMSTEH 221
Score = 31.1 bits (67), Expect = 2.3
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 25/155 (16%)
Query: 64 GHNRYGQPLPECDLC--GR-IFTRKQNIVSH-MITVHLQGLGNEI------RCRFCSKT- 112
GH + L C LC GR IF +Q + + + H+Q +E+ R F
Sbjct: 140 GHLYHKHKLHMCGLCLEGRKIFICEQKLYTRAQLNQHIQTGDSEVDGSESERGGFAGHPM 199
Query: 113 --FTTGPYTNERNLKRHVDMFHGVKGEHHCGLCPK-------VYLSNQSLKRHLRTRHLT 163
F P+ + L H+ H + C LC + Y + L+ H R H
Sbjct: 200 CEFCRNPFYGDNELYTHMSTEH-----YTCHLCQRSQPGQYEYYKNYDDLEIHFRRDHFL 254
Query: 164 GEEQYRCEYCNTVFKGNEELEAHVRSLHAGEVSET 198
E+ TVF+ EL+ H H G++S +
Sbjct: 255 CEDDSCLAKKFTVFQNESELKRHNAIEHGGKMSRS 289
>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 353
Score = 32.3 bits (70), Expect = 1.0
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 120 NERNLKRHVDMFH-GVKG-----EHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQYRCEYC 173
NE+ L R F V G EH CGLC KV+ + Q+L H + + + + + C
Sbjct: 260 NEQKLVRQETAFEDSVSGFEMNIEHRCGLCHKVFSTYQTLGGHQTFHRMRNKSKSQTKRC 319
Query: 174 NTVFKGNEELEAHVRSLHAGEVSETTDEE 202
E +EA ++ G V+ T E
Sbjct: 320 R-----EESIEAEA-GINNGSVTLTISAE 342
>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 395
Score = 32.3 bits (70), Expect = 1.0
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 476 CHICYKRFESAKSCKIHLKL-LHAFNMDTFPCHLCSVS---FGSDEALSIHLKTKHLVED 531
C+ C K FE K H K H +N+ + V+ F + +A K K +
Sbjct: 6 CNSCNKDFEDDAEQKFHYKSEWHRYNLKRKIAGVPGVTEALFEARQAAIAQEKVKAVEAP 65
Query: 532 QIYKCEECNLVFKGQDKFDAHNETR-HVNSAESS 564
+Y C CN ++ + H +++ HV A +S
Sbjct: 66 MLYSCGICNKGYRSSKAHEQHLKSKSHVLKASTS 99
Score = 29.5 bits (63), Expect = 7.1
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 417 CDFCDKQFKSKRNIRRHI--EYTHMGMQRHKCIE---CETLFKEKRSLRKHVRSKHPNSA 471
C+ C+K F+ + H E+ ++R E LF+ +++ + K +
Sbjct: 6 CNSCNKDFEDDAEQKFHYKSEWHRYNLKRKIAGVPGVTEALFEARQAAIAQEKVKAVEAP 65
Query: 472 LFPQCHICYKRFESAKSCKIHLK 494
+ C IC K + S+K+ + HLK
Sbjct: 66 MLYSCGICNKGYRSSKAHEQHLK 88
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 32.3 bits (70), Expect = 1.0
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 401 LASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLR 460
L +H K H +S C C K K + R H + + G +R C+ C + FK KRSL+
Sbjct: 216 LQTHYKRKHGHKPFS-CRLCGKLLAVKGDWRTHEK--NCG-KRWVCV-CGSDFKHKRSLK 270
Query: 461 KHVRS 465
HV++
Sbjct: 271 DHVKA 275
>At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 31.9 bits (69), Expect = 1.3
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 74 ECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTNERNLKR-HVDMFH 132
EC C ++F Q + H + H G C F T P T + H
Sbjct: 163 ECGGCKKVFGSHQALGGHRAS-HKNVKG----C-FAITNVTDDPMTVSTSSGHDHQGKIL 216
Query: 133 GVKGEHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQ 167
G H C +C +V+ S Q+L H+R H EE+
Sbjct: 217 TFSGHHKCNICFRVFSSGQALGGHMRC-HWEKEEE 250
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 453 FKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHLKLLHA 498
+++ R + ++V + ++ C KRF SA+ CK HL+ +HA
Sbjct: 221 YRDGRDVLENVLASARKDMIWTFWMCCSKRFSSAEECKNHLEEVHA 266
>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 361
Score = 31.9 bits (69), Expect = 1.3
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 355 NSFKCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIV---HST 411
NSF C +C++ + S ++L HI++ H+ + S G + K L K++ H
Sbjct: 7 NSFLCKYCYKTFPSGKALGGHIRI-HTNE-----NSVGYNGNKKKRLVDQRKMMAQKHKQ 60
Query: 412 NDWSKCDFCDKQFKSKRNIRRHI----EYTHMGM--QRHKCIECETLFKEKRSLRKHVRS 465
C C + F S + +R H+ E M M E ET R K V
Sbjct: 61 QQQVGCRECGRVFVSLKALRGHMACHGEVKKMLMDDNSQSDTESETSSAPMRKRSKRVVM 120
Query: 466 KHPNS 470
K NS
Sbjct: 121 KQSNS 125
>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 272
Score = 31.5 bits (68), Expect = 1.7
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 12/132 (9%)
Query: 406 KIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTH---MGMQRHKCIE--CETLFKEKRSLR 460
K+ N+W +C FC K F ++ + +H + H + KC+ C L +
Sbjct: 99 KLRSDINEW-RCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDT 157
Query: 461 KHVRSKHPNSALFPQCHICYKRFESAKSCK--IHLKLLHAFNMDTF-PCHLCSVSFGSDE 517
++SK +A H+C S LH F + F H CS G +
Sbjct: 158 ARLKSKCNPAAAAKNRHLCESLANSCFPVNKGSSANRLHDFFLRQFCDAHTCS---GGSK 214
Query: 518 ALSIHLKTKHLV 529
LS K + +V
Sbjct: 215 PLSQKPKKRSIV 226
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 102 NEIRCRFCSKTFTTGPYTNERNLKRHVDMFHGVKGEHHCGLC 143
NE RC FC K F Y ++ RH ++ + G+ LC
Sbjct: 105 NEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLC 146
>At5g28340.1 68418.m03441 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 435
Score = 31.5 bits (68), Expect = 1.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 372 LKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVH--STNDWSKCDFCD 421
LK + K S E + CK C K+ + Y +I H DW CD C+
Sbjct: 23 LKSLKRTKDSQPEELLCKYCSKLRKSNQYCGICKRIWHPPDDRDWVCCDGCN 74
>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 324
Score = 31.5 bits (68), Expect = 1.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 149 SNQSLKRHLRTRHLTGEEQ--YRCEYCNTVFKGNEELEAHVRSLH 191
S + ++ RT L E+ Y C CN+VF +++ AH+ S+H
Sbjct: 225 SGKDIEYDGRTHSLPYEKYGPYTCPKCNSVFDTSQKFAAHISSMH 269
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 534 YKCEECNLVFKGQDKFDAHNETRHVNSAESSKQK 567
Y C +CN VF KF AH + H + ES ++K
Sbjct: 246 YTCPKCNSVFDTSQKFAAHISSMHYKN-ESIEEK 278
>At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 402
Score = 31.5 bits (68), Expect = 1.7
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 194 EVSETTDEESRVDRRCEDCDQTFPAEKLLRQHVKNVHTFSAFYKYCKDSL--TKRAAGVP 251
+ E+ + ++ RCE+C + F EK + H +H S K C++SL R+ G
Sbjct: 51 KTQESPEPMKKILFRCEECGKGFRYEKYFKNHRSMMH-LSPNEKVCEESLMTLSRSLGFV 109
Query: 252 KELYHCESCREG 263
K+ R G
Sbjct: 110 KKKKRSRLGRSG 121
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 31.5 bits (68), Expect = 1.7
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 401 LASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLR 460
L +H K H + ++ C C K F K + R H + + G + C C + FK KRSL+
Sbjct: 249 LQTHYKRKHGSKPFA-CRMCGKAFAVKGDWRTHEK--NCGKLWY-C-SCGSDFKHKRSLK 303
Query: 461 KHVRS 465
HV++
Sbjct: 304 DHVKA 308
Score = 30.3 bits (65), Expect = 4.0
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQNI 88
LQTH + H + C +CGK F + H G+ L C CG F K+++
Sbjct: 249 LQTHYKRKHGSKPFACRMCGKAFAVKGDWRTH----EKNCGK-LWYCS-CGSDFKHKRSL 302
Query: 89 VSHM 92
H+
Sbjct: 303 KDHV 306
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 31.5 bits (68), Expect = 1.7
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 93 ITVHLQGLGNEIRCRFCSKTFTTGPYTNERNLKRHVDMFHGVKGEHHCGLCPKVYLSNQS 152
+ VH L I C C ++ + +L+RH + + C C K++ ++
Sbjct: 460 VEVHSHPLLEVIVCMDCKRSIEDRVSKVDDSLERHCEWCGHIADLIDCRTCEKLFCAS-C 518
Query: 153 LKRHLRTRHLTGEEQ--YRCEYCNTV--FKGNEELEAHVRSLHAGEVSETTDEESRVDRR 208
+KR++ +++ + + C C+ + + ELE +R + E+S + +S D
Sbjct: 519 IKRNIGEEYMSEAQSSGWDCCCCSPIPLQRLTLELEKAMRDKKSIELSSDSSSDSSSDNN 578
Query: 209 CEDCD 213
D D
Sbjct: 579 SVDTD 583
>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
domain-containing protein weak similarity to SP|P45974
Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
{Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
domain
Length = 413
Score = 31.5 bits (68), Expect = 1.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 535 KCEECNLVFKGQDKFDAHNE-TRHVNSAESSKQKVLPRCILCMKDFSTRKTLKRHIKK 591
KC +C + K ++ H E T H N AES++ + C C K ++ H K+
Sbjct: 7 KCGDCGTLLKSVEEAQEHAELTSHSNFAESTEAVLNLVCTTCTKPCRSKIESDLHTKR 64
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 31.5 bits (68), Expect = 1.7
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 412 NDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLRKHVRSKHPNSA 471
N W +C+ C+K FKS + + H + K E + L ++ L+K K +++
Sbjct: 157 NKWFECETCEKVFKSYQALG-----GHRASHKKKIAETDQLGSDE--LKK---KKKKSTS 206
Query: 472 LFPQCHICYKRFESAKSCKIHLKLLHA 498
+C IC K F S ++ H K HA
Sbjct: 207 SHHECPICAKVFTSGQALGGH-KRSHA 232
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 31.1 bits (67), Expect = 2.3
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 355 NSFKCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVH--STN 412
N CV C + + + K +K D+ + C+ C K+ K+ +I + +
Sbjct: 373 NPRACVGCGMVLSFKMAQK--MKALIPGDQLL-CQPCSKLTKPKHVCGICKRIWNHLDSQ 429
Query: 413 DWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLF 453
W +CD C S + H + +G + C C T F
Sbjct: 430 SWVRCDGCKVWIHSACDQISHKHFKDLGETDYYCPTCRTKF 470
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLS-AGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H C+ C K++ + + H G Y +CD CG +F+R+ +
Sbjct: 126 IKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEY-----KCD-CGTLFSRRDS 179
Query: 88 IVSH 91
++H
Sbjct: 180 FITH 183
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 31.1 bits (67), Expect = 2.3
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 401 LASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLR 460
L +H K H ++ C C K F K + R H + + G + C C + FK KRSL+
Sbjct: 327 LQTHYKRKHGVRPFA-CRRCGKAFAVKGDWRTHEK--NCGKLWY-C-SCGSDFKHKRSLK 381
Query: 461 KHVRSKHPNSALFPQCHICYKRFESA 486
HV++ + P C I ++ E+A
Sbjct: 382 DHVKAF--GNGHVPCCGIDHEEEEAA 405
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 31.1 bits (67), Expect = 2.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 496 LHAFNMDTFPCHLCSVSFGSDEALSIHLKTKH-LVEDQIYKCEE 538
L A ++ F C C + G E L +HLK+ H + + Y+ E+
Sbjct: 3 LKAEVVENFSCPFCLIPCGGHEGLQLHLKSSHDAFKFEFYRAEK 46
>At5g58020.1 68418.m07260 expressed protein contains PF04641:
Protein of unknown function, DUF602
Length = 354
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 534 YKCEECNLVFKGQDKFDAHNETRHVNSAESSKQKVLPRCILCMKD 578
++C L F G+ KF A HV SA++ K+ C++C D
Sbjct: 194 FQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHAD 238
>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 286
Score = 30.7 bits (66), Expect = 3.1
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 417 CDFCDKQFKSKR----NIRRH-IEYTHMG-MQRHKCIECETLFKEKRSLRKHVRSKHPNS 470
C C+KQF S + ++R H IEY + G M++ K ++ + K K L K + K +
Sbjct: 51 CVICEKQFSSGKAYGGHVRIHSIEYNNKGKMKKMKKMKLKKKKKRKIGLVKKEKEKEIDL 110
Query: 471 ALFP-----QCHICYKRFESAKSCKIHLK 494
A +C +C K F++ S H++
Sbjct: 111 ARTDVEGKIRCCLCGKEFQTMHSLFGHMR 139
Score = 29.1 bits (62), Expect = 9.3
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 506 CHLCSVSFGSDEALSIHLKTKHLVE----DQIYKCEECNLVFKGQDKFDA--HNETRHVN 559
C +C F S +A H++ H +E ++ K ++ L K + K + + ++
Sbjct: 51 CVICEKQFSSGKAYGGHVRI-HSIEYNNKGKMKKMKKMKLKKKKKRKIGLVKKEKEKEID 109
Query: 560 SAESSKQKVLPRCILCMKDFSTRKTLKRHIKK 591
A + + + RC LC K+F T +L H+++
Sbjct: 110 LARTDVEGKI-RCCLCGKEFQTMHSLFGHMRR 140
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 30.7 bits (66), Expect = 3.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 479 CYKRFESAKSCKIHLKLLHA 498
C KRF SA+ CK HL+ +HA
Sbjct: 247 CSKRFSSAEECKNHLEEVHA 266
>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1094
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 453 FKEKRSLRKHV--RSKHPNSALFPQCH-ICYKRFESAKSCKIHLKLLHA 498
+KE+R + + V +K F C +C ++F SA+ CK HL+ HA
Sbjct: 229 YKEEREVLEKVLTSAKEDREWKFWICRTLCSRKFSSAEECKNHLEQQHA 277
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 30.3 bits (65), Expect = 4.0
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 449 CETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHLKLLHAFNMDTFPCHL 508
C+ F+ K L+ H R++ + C K+F + K +H ++ H + F C
Sbjct: 1222 CKMTFESKAKLQTHKRNRCTHEG-------CGKKFRAHKYLVLHQRV-HK-DERPFECSW 1272
Query: 509 --CSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAH-NETRH 557
CS++F A + HL+ I K + C L F+ + H +T H
Sbjct: 1273 KGCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSDYSRHRRKTMH 1324
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 30.3 bits (65), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 352 RDGNSFKCVHCHRIYYSERSLKHHIKLKHS 381
+ +F C C R + SE L+ H K KHS
Sbjct: 255 KSAGAFGCKSCTRTFTSEMGLQSHTKAKHS 284
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 30.3 bits (65), Expect = 4.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 150 NQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEELE 184
+ +L+R RT L GE +YRC C + + ++L+
Sbjct: 705 DDALRRFTRTEILDGENKYRCGSCKSYERAKKKLK 739
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 489 CKIHLKLLHAFNMD-TFPCHLCSVSFGSDEAL 519
CK H KL+ A +++ TFPC CS F + E +
Sbjct: 318 CKTHCKLVRANHLNKTFPCPNCSQEFVAAEMI 349
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 29 LQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLS-AGHNRYGQPLPECDLCGRIFTRKQN 87
++ H H CE C K + + + H G Y CD CG +F+RK
Sbjct: 146 IKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRDY-----RCD-CGTLFSRKDT 199
Query: 88 IVSH 91
++H
Sbjct: 200 FITH 203
>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1122
Score = 30.3 bits (65), Expect = 4.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 463 VRSKHPNSALFPQCHICYKRFESAKSCKIHLKLLHA 498
V ++ F C C ++F SA+ CK HL+ HA
Sbjct: 240 VSAREDRKWTFWMCQNCSEKFSSAEECKKHLEQEHA 275
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 30.3 bits (65), Expect = 4.0
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEK-RSLRKHVRSKHPNS---AL 472
C C Q K ++ H +R C++ F R L+KH++ KHP++ A+
Sbjct: 87 CPLCRGQVKGWTVVKD--ARMHFNSKRRTCMQDNCSFLGNFRKLKKHMKEKHPHACPRAI 144
Query: 473 FPQCHICYKRFE 484
P +KR E
Sbjct: 145 DPALETKWKRLE 156
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 30.3 bits (65), Expect = 4.0
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 417 CDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEK-RSLRKHVRSKHPNS---AL 472
C C Q K ++ H +R C++ F R L+KH++ KHP++ A+
Sbjct: 87 CPLCRGQVKGWTVVKD--ARMHFNSKRRTCMQDNCSFLGNFRKLKKHMKEKHPHACPRAI 144
Query: 473 FPQCHICYKRFE 484
P +KR E
Sbjct: 145 DPALETKWKRLE 156
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 30.3 bits (65), Expect = 4.0
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 39 NSSCHCEVCGKRFGTTTGFHLHLS-AGH 65
NSS C+ CG+ F + T H HL+ +GH
Sbjct: 597 NSSNECDRCGEEFESRTKLHKHLADSGH 624
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 30.3 bits (65), Expect = 4.0
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 311 PDAKACSYCDKLFTDVTSREFHTPIFHPQARTADPDTRPANRDGNSFKCVHCHRIYYSER 370
P +CS C+K F + + H Q R P++ + +S + C Y
Sbjct: 98 PTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKG-PESLRGTKSSSSILRLPC---YCCAE 153
Query: 371 SLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNI 430
K++I S K + L +H K H + C+K F + +
Sbjct: 154 GCKNNIDHPRS-----------KPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDW 202
Query: 431 RRHIEYTHMGMQRHKCIECETLFKEKRSLRKHVRS 465
R H + + G + C+ C + FK KRSL+ HVR+
Sbjct: 203 RTHEK--NCG-KLWFCV-CGSDFKHKRSLKDHVRA 233
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 29.9 bits (64), Expect = 5.3
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 150 NQSLKRHLRTRHLTGEE-QYRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEESRVDRR 208
+QS K +R + EE ++C Y + LE V ++ + T E+S ++ +
Sbjct: 322 HQSAKTAVREKIALQEEFNHKCNYVQKIKDRVRRLERQVGDINEQTMKNTQAEQSEIEEK 381
Query: 209 CEDCDQTFPAEKLLRQHVK 227
+ +Q + LR +K
Sbjct: 382 LKYLEQEVEKVETLRSRLK 400
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 288
Score = 29.9 bits (64), Expect = 5.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 163 TGEEQYRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEE 202
T + +Y+CE C VFK + L H S VS E+
Sbjct: 168 TTKGRYKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQ 207
>At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 215
Score = 29.9 bits (64), Expect = 5.3
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 74 ECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGPYTNERNLKRHVDMFHG 133
+C +CG+ F Q + H T H + + ++ + G TN N+ + G
Sbjct: 95 KCSVCGKSFPSYQALGGHK-TSHRKPVSVDVNN-------SNGTVTNNGNISNGLV---G 143
Query: 134 VKGE-HHCGLCPKVYLSNQSLKRHLRTRH 161
G+ H+C +C K + S Q+L H R +
Sbjct: 144 QSGKTHNCSICFKSFPSGQALGGHKRCHY 172
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 29.9 bits (64), Expect = 5.3
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 222 LRQHVKNVHTFSAFYKYCKDS---LTKRAAGVPKELYHCESCREGF----ITVYELKTHM 274
L +H+ NVH F + +D+ L K Y+C CR F +T+ K H
Sbjct: 29 LEEHLVNVHIFEESPRDSRDAICKLCKSTVSFESFAYYCRECRSHFHKDCLTIINAKIHE 88
Query: 275 R-ITHDIEYSWSTCNVC 290
+T + C+VC
Sbjct: 89 HTLTFIRRENPFPCDVC 105
>At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 373
Score = 29.9 bits (64), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 381 STDEAMECKSCGKICSNKYYLASHMKIVHSTND 413
S+DE C SCG+I L +H+ I H+ ++
Sbjct: 121 SSDEIFPCNSCGEIFPKINLLENHIAIKHAVSE 153
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 29.1 bits (62), Expect = 9.3
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 178 KGNEELEAHVRSLHAGEVSETTDEESRVDRRCEDCDQTFPAEKLLRQHVKNVHTFSAFYK 237
KG +L + +LHA + T++E D C C + P K R H ++
Sbjct: 306 KGYIKLRVALGALHAALLDATSEELRDYDDECAICRE--PMAKAKRLHCNHLFHLGCLRS 363
Query: 238 YCKDSLTKRAAGVPKELYHCESCRE 262
+ L E+Y C +CR+
Sbjct: 364 WLDQGL--------NEVYSCPTCRK 380
>At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 300
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 168 YRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEESR 204
Y C CN VF +++ AH+ S + E + D+ R
Sbjct: 243 YTCPRCNGVFDTSQKFAAHMLSHYNNETDKERDQRFR 279
>At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 292
Score = 29.1 bits (62), Expect = 9.3
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 504 FPCHLCSVSFGSDEALSIHLKT--KHLVEDQIYKCEECNLVFKGQ-DKFDAHNE----TR 556
+ C C SF S +AL H + K + ++KC E + +A +
Sbjct: 118 YQCKTCDKSFHSFQALGGHRASHKKPKLGASVFKCVEKKTASASTVETVEAGAVGSFLSL 177
Query: 557 HVNSAESSKQ-KVLPRCILCMKDFSTRKTLKRHIKKFHEGFDADELASFGSKRRVFS 612
V S++ SK+ + C +C +FS+ + L H+++ H G + A+ K + S
Sbjct: 178 QVTSSDGSKKPEKTHECSICKAEFSSGQALGGHMRR-HRGLTINANATSAIKTAISS 233
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 29.1 bits (62), Expect = 9.3
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 166 EQYRCEYCNTVFKGNEELEAHVRS----LHAGEVSETTDEESRVDRR----CEDCDQT 215
E+Y+C +C F L H+RS L A T + E V+ R C+D D T
Sbjct: 2 ERYKCRFCFKSFINGRALGGHMRSHMLTLSAERCVITGEAEEEVEERPSQLCDDDDDT 59
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 479 CYKRFESAKSCKIHLKLLHAFNMDTF 504
C K+F SA+ CK HL+ HA + F
Sbjct: 257 CSKKFSSAEECKNHLEKEHAADYKPF 282
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 473 FPQCHICYKRFESAKSCKIHLKLLHA 498
F C C K+F S + CK HL HA
Sbjct: 229 FWMCRTCSKKFSSPEECKNHLGQEHA 254
>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1094
Score = 29.1 bits (62), Expect = 9.3
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 182 ELEAHVRSLHAGEVSETTDE---ESRVDRR-----CEDCDQTFPAEKLLRQHVKNVHTFS 233
EL ++V ++ E + ++ +R++R+ C C QTF K + H++ VH
Sbjct: 171 ELRSYVERVYGREGLDALEQVLDSARINRKWKFWMCRTCSQTFFYPKKFKNHLEQVH--D 228
Query: 234 AFYKYCKDSLTK 245
A YK ++ L +
Sbjct: 229 AKYKPVREDLAQ 240
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.135 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,955
Number of Sequences: 28952
Number of extensions: 717022
Number of successful extensions: 3452
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2830
Number of HSP's gapped (non-prelim): 698
length of query: 632
length of database: 12,070,560
effective HSP length: 86
effective length of query: 546
effective length of database: 9,580,688
effective search space: 5231055648
effective search space used: 5231055648
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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