GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001688-TA|BGIBMGA001688-PA|IPR001611|Leucine-rich repeat
         (286 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   3.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 99  ELDTWRSEAARRLPNLKKLDGETVLREDD 127
           ++ TW + A RRL    K+  E   + DD
Sbjct: 130 QVSTWFANARRRLKKENKMTWEPKNKTDD 158


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 197  HNPRILADKSTSLTVVPQQASIA 219
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 197  HNPRILADKSTSLTVVPQQASIA 219
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,496
Number of Sequences: 317
Number of extensions: 2705
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 114,650
effective HSP length: 56
effective length of query: 230
effective length of database: 96,898
effective search space: 22286540
effective search space used: 22286540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)