Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001688-TA|BGIBMGA001688-PA|IPR001611|Leucine-rich repeat
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 61 2e-10
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 44 3e-05
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 36 0.009
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 34 0.020
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 32 0.082
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 32 0.082
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 3.1
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 27 4.1
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.1
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 5.4
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 25 9.4
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 25 9.4
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 25 9.4
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 61.3 bits (142), Expect = 2e-10
Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRV 61
I K L+KL +LS+ N I F + L L EL+VS+N + G+ VL NL +
Sbjct: 182 ITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEI 241
Query: 62 LYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKLDGET 121
L +SNN++K S L L NL +L N EL +++ E L LKKL ET
Sbjct: 242 LDVSNNMIKHLS---YLAGLKNLVELWASNN------ELSSFQ-EIEDELSGLKKL--ET 289
Query: 122 VLREDDP 128
V E +P
Sbjct: 290 VYFEGNP 296
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 7 GLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSN 66
GL K L+ L L +N IK +ES+ +TL EL + NLI +++ + ++NL L +S
Sbjct: 57 GLERFKNLQSLCLRQNQIKK---IESVPETLTELDLYDNLIVRIENLDNVKNLTYLDLSF 113
Query: 67 NLVKEWSEFNKLQDLPNL 84
N +K N L+ L NL
Sbjct: 114 NNIKTIRNINHLKGLENL 131
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 43.6 bits (98), Expect = 3e-05
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRV 61
+ +T ++L L+ L + N ++ G+ SL L EL V N + L G+ L L
Sbjct: 658 LSSLTSFSNLLNLQYLDISYNQLEDLTGLSSLIH-LRELKVDSNHLWSLDGIQHLDGLLK 716
Query: 62 LYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLK 115
L NN +KE S N +L L++LL N + + E+ + ++ +L N K
Sbjct: 717 LSACNNRIKELSFTN--SNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNK 768
Score = 32.3 bits (70), Expect = 0.082
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 IEKVTGLNS-LKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLR 60
I++++ NS L +L L LG N I+ + SL L L + N + LK + +LR
Sbjct: 724 IKELSFTNSNLHRLEELLLGNNEIEEIEEISSL-QNLMVLQLDNNKLTNLKASQPMIHLR 782
Query: 61 VLYMSNNLVKE 71
+L +SNN + +
Sbjct: 783 ILRISNNAIHQ 793
Score = 30.7 bits (66), Expect = 0.25
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 10 SLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGV-HVLRNLRVL 62
S+ LR+L L NYI ++ L + L++ N I+K++ + +L NL+ L
Sbjct: 889 SMPNLRVLDLSHNYISDIESLKPL-QMIHRLYLVGNRIKKMRNLCDILANLKQL 941
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 35.5 bits (78), Expect = 0.009
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 55 VLRNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNL 114
VL NL+ L ++ N ++E ++ + L P L +L + NP+ + +R R+P+L
Sbjct: 85 VLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPV---AQKQYYRLYLIWRIPSL 141
Query: 115 KKLDGETVLRED 126
LD E V R +
Sbjct: 142 HILDFERVRRNE 153
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 34.3 bits (75), Expect = 0.020
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 56 LRNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYD--ACELDTWRSEAARRLPN 113
L N R+ +S+ + WS KL P L +L+ VGNP+ A ++ E R P
Sbjct: 247 LANNRITSLSD--LDPWSPKTKL---PELQELVLVGNPIVTTFANRAMDYQREMVSRFPK 301
Query: 114 LKKLDGETVLRE 125
L+ LDG ++ E
Sbjct: 302 LRLLDGNSINSE 313
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 32.3 bits (70), Expect = 0.082
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 5 VTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYM 64
V GL ++KK IL L YI +E +G+TL L++ L+ V R+ VL +
Sbjct: 746 VRGLRTIKK-EILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQNVPDARDAEVLNL 804
Query: 65 SNNLVKEWSE 74
+V + SE
Sbjct: 805 ITTIVNQLSE 814
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 32.3 bits (70), Expect = 0.082
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 10 SLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVL---RNLRVLYMS- 65
SL L+IL L RN++ S +G+E++ +LE+L + N I + L N Y+S
Sbjct: 401 SLSHLQILVLSRNHLTSLSGLENV-PSLEKLDIRDNSITDVVEFRRLVGNTNFEEAYLSL 459
Query: 66 NNLVKEWSE-----FNKLQDLPNLDDLLFVG 91
N K +S FN ++ P D++ G
Sbjct: 460 NPFTKTYSSYRITIFNYFREYPGSKDIMLDG 490
Score = 25.8 bits (54), Expect = 7.1
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 8 LNSLKKLRILSLGRNYIKSFAGMESLG-DTLEELWVSYNLIEKLKGVHVLRNLRVLYMSN 66
L L +L L+L N I + L+ L +S N + L G+ + +L L + +
Sbjct: 375 LGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLSGLENVPSLEKLDIRD 434
Query: 67 NLVKEWSEFNKLQDLPNLDDLLFVGNP 93
N + + EF +L N ++ NP
Sbjct: 435 NSITDVVEFRRLVGNTNFEEAYLSLNP 461
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 30 MESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLL 88
ME LG EE W ++ + L + V Y NNL+ +W + K +D LD L+
Sbjct: 243 MELLGTPTEERWPG---LKNYPEYYQLSSFEVRYW-NNLLPQWYQTVKNRDPQGLDLLM 297
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 69 VKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKLDGETVLREDDP 128
+ + +F L D ++ + + D + EA L KK G+ + + DP
Sbjct: 304 MSSFGDFIALSDTVDVCTARIISREVSDGVIAPGYEPEALELLK--KKKGGKYCVLQMDP 361
Query: 129 PLTVANMQIKRIYTSSEQQH 148
A ++ +++Y S QQH
Sbjct: 362 KYVPAEIETRQVYGISLQQH 381
>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 164 FSFRRHINLQTGDLRRNNHNLLIHHQRIKNFGY-HNPRILADKS 206
+ F + I + G R N HH RIKNF + N R + D++
Sbjct: 78 YEFNQKIITEAGITMRINGEWDYHHYRIKNFLHLRNGRFVPDEA 121
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 198 NPRILADKSTSLTVVPQQASIAADSPRF--LVLRHA 231
NP + STS ++P+ SI +PRF LV H+
Sbjct: 316 NPLAIIPSSTSKNLLPETPSIVRFNPRFSQLVTAHS 351
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 122 VLREDDPPLTVANMQIKRIYTSSEQQHLDRRSTEQ 156
+L +DD +T++ QI + +T S +H D++ E+
Sbjct: 59 LLVKDDKLVTLSYPQISKYFTFSPFEHTDKQIAER 93
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 98 CELDTWRSEAARRLPNLKKLDGETV 122
CELD R+ + LP+LK D E +
Sbjct: 248 CELDAMRALSLNNLPDLKDSDIELI 272
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 135 MQIKRIYTSSEQQHLDRRSTEQCHPLGGRFSFRRH 169
M+ R +T +E +RR +++ H G R+ RH
Sbjct: 109 METLRSFTPTEIDSENRRRSKEAHSTGSRYYRLRH 143
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,483
Number of Sequences: 5004
Number of extensions: 53482
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 21
length of query: 286
length of database: 2,362,478
effective HSP length: 72
effective length of query: 214
effective length of database: 2,002,190
effective search space: 428468660
effective search space used: 428468660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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