Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001688-TA|BGIBMGA001688-PA|IPR001611|Leucine-rich repeat
(286 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0) 57 1e-08
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13) 53 2e-07
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20) 52 7e-07
SB_9229| Best HMM Match : LRR_1 (HMM E-Value=0.038) 48 7e-06
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07) 48 9e-06
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15) 45 6e-05
SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06) 43 3e-04
SB_40911| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 38 0.009
SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06) 38 0.012
SB_52093| Best HMM Match : LRR_1 (HMM E-Value=1.3e-05) 37 0.022
SB_21653| Best HMM Match : LRR_1 (HMM E-Value=0.00021) 37 0.022
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21) 36 0.050
SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_51747| Best HMM Match : LRR_1 (HMM E-Value=2.5e-16) 33 0.20
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21) 33 0.36
SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066) 32 0.47
SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34) 32 0.47
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_5397| Best HMM Match : LRR_1 (HMM E-Value=1.9) 31 1.1
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 31 1.4
SB_54894| Best HMM Match : RuvB_C (HMM E-Value=2.3) 30 1.9
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 29 4.4
SB_55032| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 29 4.4
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0) 28 7.6
>SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)
Length = 480
Score = 57.2 bits (132), Expect = 1e-08
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 18/123 (14%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKS-----FAGMESLGDTLEELWVSYNLIEKLKGVHVL 56
I ++ GL L +L ++ LG N I+S G+E L ++LEEL++S+N IE++KG+ L
Sbjct: 365 IGRIEGLEHLTELTMVELGANKIRSNRIVELKGLEHL-ESLEELYISHNGIEEIKGLESL 423
Query: 57 RNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDT-WRSEAARRLPNLK 115
N +N +K W + ++L P L + NPL DT +R + LP LK
Sbjct: 424 FN-------DNQLKHWEDLDELAKCPKLHTVYLERNPL----SRDTAYRRKVKLALPALK 472
Query: 116 KLD 118
++D
Sbjct: 473 QID 475
>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
Length = 335
Score = 53.2 bits (122), Expect = 2e-07
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 1 MIEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLR 60
+IEK+ GL+ L L+ L L N I+ G++ L L++L + N I K++ + L NL
Sbjct: 76 IIEKIEGLDMLVNLQWLDLSFNNIEVIEGLDKL-TKLKDLTLYNNRITKIENMDSLTNLH 134
Query: 61 VLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKLD 118
V + NN +K+ L+ NL L NP CE ++ LP+L LD
Sbjct: 135 VFSIGNNSLKQLDNVIYLRRFKNLRTLNLSFNPF---CEDSKYKEYVIAHLPDLVYLD 189
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 37 LEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYD 96
L L + N+IEK++G+ +L NL+ L +S N ++ L L L DL N +
Sbjct: 67 LTTLQLDNNIIEKIEGLDMLVNLQWLDLSFNNIE---VIEGLDKLTKLKDLTLYNNRITK 123
Query: 97 ACELDTWRSEAARRLPN--LKKLDGETVLR 124
+D+ + + N LK+LD LR
Sbjct: 124 IENMDSLTNLHVFSIGNNSLKQLDNVIYLR 153
>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
Length = 681
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRV 61
IE+++GL+SLK LR+L LG+N I+ +E+L L+ L + N I K++ + L LRV
Sbjct: 197 IEEISGLSSLKSLRVLMLGKNRIRKINNLEAL-TKLDVLDLHGNRISKIENLSHLTELRV 255
Query: 62 LYMSNNLVKEWSEFNKLQDLPNLD 85
L ++ N + + + ++ L L+
Sbjct: 256 LNLAGNEILKVCNISGMRSLAELN 279
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 1 MIEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLR 60
+I + L +L++L L + N I+ +G+ SL +L L + N I K+ + L L
Sbjct: 174 LIRNIQHLANLRRLIFLDIYDNQIEEISGLSSL-KSLRVLMLGKNRIRKINNLEALTKLD 232
Query: 61 VLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRL 111
VL + N + S+ L L L L GN + C + RS A L
Sbjct: 233 VLDLHGNRI---SKIENLSHLTELRVLNLAGNEILKVCNISGMRSLAELNL 280
Score = 30.7 bits (66), Expect = 1.4
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKS--FAGMESLGDTLEELWVSYNLIEKL---KGVHVL 56
I KV ++ ++ L L+L RN I + A + ++ Y E L + V L
Sbjct: 263 ILKVCNISGMRSLAELNLRRNKICTVVIACSVLVYRRRNRVFWKYIKCEVLCAQEEVDRL 322
Query: 57 RNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKK 116
NL+ L++S N + + + N L ++ +L GNP A ++ T++ + + L++
Sbjct: 323 SNLQRLFLSFNCISRFEDINCLTRSTSITELSLDGNPF--ASDV-TYKQTVLKSVTCLRQ 379
Query: 117 LDGETVLRED 126
LD + + E+
Sbjct: 380 LDMKRITEEE 389
>SB_9229| Best HMM Match : LRR_1 (HMM E-Value=0.038)
Length = 92
Score = 48.4 bits (110), Expect = 7e-06
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 22 NYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDL 81
N I G+E L D+LEEL++S+N IE++KG+ L N +N ++ W + ++L
Sbjct: 2 NRIVELKGLEHL-DSLEELYISHNGIEEIKGLESLFN-------DNQLEHWEDLDELAKC 53
Query: 82 PNLDDLLFVGNPLYDACELDT-WRSEAARRLPNLKKLD 118
P L + NPL DT +R + LP LK++D
Sbjct: 54 PKLHTVYLERNPL----SRDTAYRRKVKLALPALKQID 87
>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
Length = 534
Score = 48.0 bits (109), Expect = 9e-06
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 1 MIEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEK---LKGVHVLR 57
M++KV L L L L++ N I+S + L L L +++N + +K + +
Sbjct: 45 MLKKVENLEELDGLDTLNVSNNIIRSIENIACL-PVLNTLQIAHNRLASAGDIKELASCQ 103
Query: 58 NLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKL 117
L ++ +S N + + + + L ++PNL L +GNP+ ++ +R +L NLK L
Sbjct: 104 KLSIVDLSYNKIDDPNIVDVLAEMPNLSVLNLIGNPVIK--KIKNYRKNMILKLKNLKYL 161
Query: 118 DGETV 122
D V
Sbjct: 162 DDRPV 166
Score = 35.1 bits (77), Expect = 0.067
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 40 LWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDLPNLD 85
LW+ N IEK++ + ++ L+ LY+ N++K+ +L L L+
Sbjct: 17 LWLECNGIEKIENLGFMKELKCLYLQQNMLKKVENLEELDGLDTLN 62
Score = 30.7 bits (66), Expect = 1.4
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 4 KVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLY 63
K+ L ++ L L N I+ + + + L+ L++ N+++K++ + L L L
Sbjct: 4 KIENLEEYTGVKCLWLECNGIEKIENLGFMKE-LKCLYLQQNMLKKVENLEELDGLDTLN 62
Query: 64 MSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNL--KKLDGET 121
+SNN+++ + LP L+ L N L A ++ S + +L K+D
Sbjct: 63 VSNNIIR---SIENIACLPVLNTLQIAHNRLASAGDIKELASCQKLSIVDLSYNKIDDPN 119
Query: 122 V--LREDDPPLTVANM 135
+ + + P L+V N+
Sbjct: 120 IVDVLAEMPNLSVLNL 135
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 46.4 bits (105), Expect = 3e-05
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 11 LKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVK 70
L LR+L + R + G+ SL +L EL++++N I + V +L NL+VL + NLV
Sbjct: 755 LTNLRMLWMCRCSLSDLDGISSLS-SLAELYLAFNDISDVSPVSMLDNLQVLDLEGNLVD 813
Query: 71 EWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAA---------RRLPNLKKLDGET 121
E ++ L +L L GNP+ A D E A + +P+L+ LD E
Sbjct: 814 EIAQVEFLTLCSSLKCLNLEGNPVCTAPHPDASEEELASYDYRKAVHQAVPSLRFLDDEP 873
Query: 122 VLRE 125
L E
Sbjct: 874 FLVE 877
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 11 LKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVK 70
L L L L + I + + + L LW+ + L G+ L +L LY++ N +
Sbjct: 732 LPNLNKLKLSNSIISTVRDLGTCLTNLRMLWMCRCSLSDLDGISSLSSLAELYLAFNDIS 791
Query: 71 EWSEFNKLQDLPNLD 85
+ S + L +L LD
Sbjct: 792 DVSPVSMLDNLQVLD 806
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 46.0 bits (104), Expect = 4e-05
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 5/157 (3%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRV 61
IE + L+ L L L + + +K +G++ + L++++ N I K++ + L L V
Sbjct: 28 IEVLQNLDCLPHLTELCVSESSLKELSGIDKCTN-LKKVYFYDNHISKIENLSSLTRLTV 86
Query: 62 LYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLY---DACELDTWRSEAARRLPNLKKLD 118
L+++NN ++ + L LP+L L + +P Y L + + LP L +LD
Sbjct: 87 LWLNNNNIQAIEDLTNLVHLPHLKS-LSLKDPTYGPNPVSLLCNYATHLLFHLPKLTRLD 145
Query: 119 GETVLREDDPPLTVANMQIKRIYTSSEQQHLDRRSTE 155
V + L A + K++Y + + L R +
Sbjct: 146 SYDVDNKALKELAEATVSKKKMYYNMRVKTLHRNKAD 182
Score = 36.3 bits (80), Expect = 0.029
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 7 GLNSLKKLRILSLGRNYIKSFAGMESLGDT-----LEELWVSYNLIEKLKGVHVLRNLRV 61
GLN LK + ++ + I SF + L D LE L S+N + L+GV L
Sbjct: 881 GLNRLKFINSMTALKRLIVSFNELTRLEDVNHMLFLEHLDASFNKLTTLEGVKGCSRLGY 940
Query: 62 LYMS-NNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKLDGE 120
L +S N L E ++ +L L ++ + +T R A RL NL+ LDG+
Sbjct: 941 LDVSWNQLQYTREELGMMRK--HLITLTYLDTRHNPWQKTETLRMRALGRLKNLEFLDGK 998
Query: 121 TVLRED 126
V E+
Sbjct: 999 PVTDEE 1004
>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
Length = 1466
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSF-AGMESLGDTLEELWVSYNLIEKLKGVHVLRNLR 60
IE++ L SL +L +L L N +++ + + + +L ++ N + + G+ L +L
Sbjct: 982 IEEINHLESLSELEVLDLSHNKLRAIPTNLNAKLGNIRKLNLANNQLSCVDGLEKLYSLV 1041
Query: 61 VLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPL 94
L + +NL+ E S + DLP L++L GNPL
Sbjct: 1042 ELDLRSNLLTEVSSVVLIGDLPCLENLHLEGNPL 1075
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 25 KSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVK 70
KS + +ESL +E L S+N IE++ + L L VL +S+N ++
Sbjct: 960 KSLSNLESLLPNIESLNWSHNCIEEINHLESLSELEVLDLSHNKLR 1005
>SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 44.4 bits (100), Expect = 1e-04
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLR---- 57
I + GL SL LR+L+L N I G+E+L L +L +SYN IE + G+ L
Sbjct: 68 ISHIEGLTSLGYLRVLNLSCNRIYLVEGLENL-RKLTKLDLSYNFIENVSGLKDLHGNGY 126
Query: 58 NLRVLYMSNNLVKEWSEF-NKLQDLPNLDDL-LFVGNPLYDACELDTWRSEAARRLPNLK 115
+L LY+ N + F + + +L +L L + C + +R +P L
Sbjct: 127 SLTTLYLHGNRIASLEHFISSVIGCISLKELTLQMYGEGNHVCNVSGYRDGVLSAMPGLA 186
Query: 116 KLDG 119
LDG
Sbjct: 187 VLDG 190
>SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06)
Length = 192
Score = 43.2 bits (97), Expect = 3e-04
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 37 LEELWVSYNLIEKLKGVHV-LRNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLY 95
LE L +S+N + + V + NL++L + N + + E +KL LPNL + GNP+
Sbjct: 89 LELLDLSFNELSTIDPVLLDFPNLKILCLQGNNISDLHEIDKLAALPNLHTISLQGNPIE 148
Query: 96 DACELDTWRSEAARRLPNLKKLDGETVLRED 126
D D ++ +L +LKK + + ++D
Sbjct: 149 DD---DHFKCYTTSKLLHLKKFNSAPLTKQD 176
>SB_40911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 1 MIEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKG--VHVLRN 58
MIEK+ L+ L +LR L+L RN I G+ESL L+ L +S N I+ L + LR
Sbjct: 139 MIEKIEKLDKLTQLRELNLSRNSITKLEGLESLVH-LQVLNISRNQIQTLPAPLMKKLRE 197
Query: 59 LRVLYMSNN 67
LRV + + N
Sbjct: 198 LRVFHFAYN 206
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 10 SLKKLRILSLGRNYIKSFAGMESLGDTLE-ELWVSYNLIEK---LKGVHVLRNLRVLYMS 65
S K + + N IK + E+L + L + +L +K L+ + L+NL L++S
Sbjct: 77 SPSKAGVAYISENLIKRLSKEENLANIKSLNLALGKDLNKKFRYLENLDNLKNLSALHIS 136
Query: 66 NNLVKEWSEFNKLQDLPNLD 85
N+++++ + +KL L L+
Sbjct: 137 NHMIEKIEKLDKLTQLRELN 156
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRV 61
I+++ L+ K L +L L N I + G+ L L++ N I +++G+ R L
Sbjct: 41 IDEIDNLSMCKNLSVLYLYDNNISKIKNLGFAGN-LTHLYLQNNKISRIEGLDHCRRLSK 99
Query: 62 LYMSNNLVKEWSEFNKLQDLPNL 84
LY+ N + +KL++L L
Sbjct: 100 LYLGGNSITVIEGLDKLENLREL 122
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 IEKVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRV 61
I K+ L L L L N I G++ L +L++ N I ++G+ L NLR
Sbjct: 63 ISKIKNLGFAGNLTHLYLQNNKISRIEGLDHCR-RLSKLYLGGNSITVIEGLDKLENLRE 121
Query: 62 LYM 64
L+M
Sbjct: 122 LHM 124
>SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06)
Length = 632
Score = 37.5 bits (83), Expect = 0.012
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 12 KKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVL----RNLRVLYMS-N 66
K L+ L L N I + + L L + YN I + G H+ R+L L +S N
Sbjct: 157 KCLKELELSANKISDISSLCRNPPPLIHLGLGYNQITSISG-HMTPLAWRHLLSLDLSCN 215
Query: 67 NLVKEWSEFNKLQDLPNLDDLLFVGNPL 94
NL +S N L+ LP L +L+ GNPL
Sbjct: 216 NLPDLYSTINTLKTLPKLRNLVMQGNPL 243
>SB_52093| Best HMM Match : LRR_1 (HMM E-Value=1.3e-05)
Length = 252
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 6 TGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNL 59
T L S +L+ L L RN I+S G+ESL LE L + YN I L+ + L+ L
Sbjct: 42 TALKSFTRLKNLDLSRNAIQSLQGVESL-QLLETLNLYYNNISYLQDLSALKYL 94
>SB_21653| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
Length = 198
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 23 YIKSFAGMESLGDT--LEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQD 80
+ + F +E+L + ++ LW+ N IEK++ + ++ L+ LY+ N++K+ +L
Sbjct: 90 HFRGFGKIENLEEYTGVKCLWLECNGIEKIENLGFMKELKCLYLQQNMLKKMENLEELDG 149
Query: 81 LPNLD 85
L L+
Sbjct: 150 LDTLN 154
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 4 KVTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLY 63
K+ L ++ L L N I+ + + + L+ L++ N+++K++ + L L L
Sbjct: 96 KIENLEEYTGVKCLWLECNGIEKIENLGFMKE-LKCLYLQQNMLKKMENLEELDGLDTLN 154
Query: 64 MSNNLVKEWSEFNKLQDLPNLDDLLFVGNPLYDACEL 100
+SNN+++ + LP L+ L N L A ++
Sbjct: 155 VSNNIIR---SIENIACLPVLNTLQIAHNRLASAGDI 188
>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
Length = 609
Score = 35.5 bits (78), Expect = 0.050
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 22 NYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDL 81
N IK +E+L TL++L ++ N I +KG+ L+ + + N + + +E +++L
Sbjct: 179 NNIKKIENLETL-KTLQKLNLASNCIRSMKGLQGHPMLQEVDLQENQIIDIAEVRYIREL 237
Query: 82 PNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKLDGETVLRED 126
L +L NP+ L +R R+ L +LD V E+
Sbjct: 238 KLLRNLNLQSNPIQ---SLPDYRLSLLFRIQTLLELDKSKVTPEE 279
>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 33.9 bits (74), Expect = 0.15
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 27/121 (22%)
Query: 33 LGDTLEELWVSYNLIEKLKGVHVL-----------------RNLRVLYMSNNLVKEWSEF 75
L DT L +Y L++ L GV VL +++ L+M+N+ +++W+E
Sbjct: 187 LNDTAVSLATTYKLLDCLPGVQVLFVSLNDYDTIPNTDKTYPSIKHLFMNNHAIQDWAEI 246
Query: 76 NKL-QDLPNLDDLLFVGNPLYDAC-------ELDTWR--SEAARRLPNLKKLDGETVLRE 125
+ + P L++L+ +P+ + L T + A RLPN+ KL+G V E
Sbjct: 247 TNIGRIFPKLEELVMSESPIENISPTGELFPNLHTLKLNKTAIGRLPNITKLNGTKVDEE 306
Query: 126 D 126
+
Sbjct: 307 E 307
>SB_51747| Best HMM Match : LRR_1 (HMM E-Value=2.5e-16)
Length = 288
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 37 LEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDLPNLDDLLFVGNPL 94
L+ L +++N ++ L G+ L L L ++ N V +EF+KL + L L GNPL
Sbjct: 151 LKSLILNHNNLQSLSGLDCLVGLIELGIAENRVSTLTEFSKLTCMSQLRYLSVNGNPL 208
>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
Length = 791
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 5 VTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKL-KGVHVLRNLRVLY 63
V+G NSL L++ N + S +L EL V+ N I KL + + L NL VL
Sbjct: 695 VSGSNSLTFKSKLNVKDNQLTSLPLDFGSWISLVELNVATNQISKLPEDIQWLVNLEVLI 754
Query: 64 MSNNLVKE 71
+SNNL+K+
Sbjct: 755 LSNNLLKK 762
>SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 5 VTGLNSLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKL-KGVHVLRNLRVLY 63
V+G NSL L++ N + S +L EL V+ N I KL + + L NL VL
Sbjct: 270 VSGSNSLTFKSKLNVKDNQLTSLPLDFGSWISLVELNVATNQISKLPEDIQWLVNLEVLI 329
Query: 64 MSNNLVKE 71
+SNNL+K+
Sbjct: 330 LSNNLLKK 337
>SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)
Length = 727
Score = 32.3 bits (70), Expect = 0.47
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 10 SLKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNL---IEKLKGVHVLRNLRVLYMSN 66
S KL+ LSL N + + G+ SL L+ L ++N +++++G +L NL + +N
Sbjct: 183 SCSKLQKLSLDHNQLIATKGLSSLR-VLQTLSCAHNHLPNVKEIEGCQLLENLDL--RAN 239
Query: 67 NLVKEWSEFN-------KLQD--LPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKL 117
NL++ S N +L D + L+ L PL + + R+ ++ +PNLK
Sbjct: 240 NLLQPPSLTNHVLLRELRLDDNSICTLEPLAKSWLPLLETLSVSQNRNAISQDIPNLKIF 299
Query: 118 DGE 120
D E
Sbjct: 300 DNE 302
>SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)
Length = 409
Score = 32.3 bits (70), Expect = 0.47
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 11 LKKLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLK-GVHVLRNLRVLYMS-NNL 68
++ L IL++ N I S + L L EL ++ N I++L H+L+NL+ L+ S NNL
Sbjct: 241 IQSLEILNISSNNITSLSDEIRLLRNLVELNLNKNNIQELPYDFHLLKNLKTLFFSANNL 300
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 32.3 bits (70), Expect = 0.47
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 6 TGLNSLKKLRILSLGRNYIKSFAGMESLGD-TLEELWVSYNLIEKLKG--VHVLRNLRVL 62
T + L L+ L L N +K+F+ G +L+ L ++ NL+ +++ LR L +L
Sbjct: 158 TTFHGLAALQRLRLHNNNLKTFSERTLQGTLSLKSLQLNNNLLTRIEPGTFRNLRGLEIL 217
Query: 63 YMSNNLVKEWSEFNKLQDLPNLDDLLFV 90
Y++NN + E + P+L LLFV
Sbjct: 218 YLNNNNITELDQ-RLFTRTPSL-KLLFV 243
>SB_5397| Best HMM Match : LRR_1 (HMM E-Value=1.9)
Length = 193
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 62 LYMSNNLVKEWSEFNKLQD-LPNLDDLLFVGNPLYDACELDTWRSEAARRLPNLKKLDGE 120
LY ++ K S LQ P L L GNP+ C DT+ + PNL KLDG+
Sbjct: 126 LYYQTDISK-LSALEALQGGCPGLRTLDLRGNPI---CHSDTYPKDVIALFPNLTKLDGQ 181
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 22 NYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDL 81
N ++ F + +L TLE +S KG L NL+ L + +N + W E N +DL
Sbjct: 122 NGLQMFTNLINL--TLENNSISAIAPHAFKG---LDNLQSLNLRHNNISLW-EGNISRDL 175
Query: 82 PNLDDLLFVGNPLY 95
P+L+ L GNP++
Sbjct: 176 PSLEILELDGNPVW 189
>SB_54894| Best HMM Match : RuvB_C (HMM E-Value=2.3)
Length = 148
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 22 NYIKSFAGMESLGDTLEELWVSYNLIEKLK 51
N I G+E L D+LEEL++S+N IE++K
Sbjct: 2 NRIVELKGLEHL-DSLEELYISHNGIEEIK 30
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 22 NYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSEFNKLQDL 81
+Y+ + +S ++ +++ N I ++ NLRV+ +SNN + + L+DL
Sbjct: 338 HYVPTAVTTKSRIPKVQVMYLKNNKIVAIENGAFPLNLRVMDLSNNKIGRIDKI-VLKDL 396
Query: 82 PNLDDLLFVGNPL 94
NL+ LL N L
Sbjct: 397 VNLNSLLLNNNQL 409
>SB_55032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 177 LRRNNHNLLIHHQRIKNFGYHNPRILADKSTSLTVVPQQASIAADSPRFLVLRHAPTLP 235
LRRN H +H + I YH R +DK T A + ++LRH LP
Sbjct: 80 LRRNIHRYSLHLRGIIVNYYHGLRSKSDKKTGRPADTGAAYSSTGRIFLVILRHTRLLP 138
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 16 ILSLGRN-YIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEWSE 74
I + RN ++S S GD+LE + V E KG+ L + S+NL+ S
Sbjct: 699 ITGISRNALLESLRSSSSDGDSLEGVPVDLMYNESDKGLLAEARLNNVLASSNLMDSTSN 758
Query: 75 FNKLQDLPNLDD 86
L P+L D
Sbjct: 759 KRPLDSSPDLSD 770
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 97 ACELDTWRSEAARRLPNLKKLDGETVLREDDPPLTVANMQIKRIYTSSEQQHLDRRSTE 155
ACEL + AA NLKKL G D+ TVA++Q K + + ++ H + E
Sbjct: 1643 ACELGREKERAAHLEDNLKKLQGVV----DEGRATVASLQ-KSLDQAKKKNHEEEERLE 1696
>SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 109 RRLPNLKKLDGETV-LREDDPPLTVANMQIKRIYTSSEQ-QHLD 150
R LP L DG LR +P +T +IKRI+ S Q QH D
Sbjct: 210 RFLPKLMASDGLAAKLRPRNPGITTRLPEIKRIFASPRQHQHND 253
>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
Length = 1040
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 10 SLKKLRILSLGRNYIKSFAGMESLGDTLEEL-WVSYNLIEKLKGVHVLRNLRVLYMSNN 67
S K+ +Y K +G GD +EE+ W +++ L+ + V N V + S+N
Sbjct: 741 SYAKVHTALFTTDYFKGHSGHSPYGDNVEEMDWSVGQIMDALEELGVKNNTFVYFTSDN 799
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,375,843
Number of Sequences: 59808
Number of extensions: 368342
Number of successful extensions: 804
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 74
length of query: 286
length of database: 16,821,457
effective HSP length: 81
effective length of query: 205
effective length of database: 11,977,009
effective search space: 2455286845
effective search space used: 2455286845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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