GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001688-TA|BGIBMGA001688-PA|IPR001611|Leucine-rich repeat
         (286 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    31   0.012
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 12  KKLRILSLGRNYIKSFAGMESLG-DTLEELWVSYNLIEKLKGVHV--LRNLRVLYMSNNL 68
           K +R+L +  + I+S       G + L+ L +  N I +LKG     L +LR LY+ NNL
Sbjct: 818 KNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNL 877

Query: 69  VKEWSEFNKLQDLPNLDDLLFVGNPL 94
           +        L  L +L+ L   GN L
Sbjct: 878 IGFIGNLTFL-PLRSLEILRLSGNRL 902



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 14  LRILSLGRNYIKSFAGMESLGDT-LEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLV 69
           L+ L +  N+I+S      + D+ ++ L  S+N I +L  + V  ++ +L+++NN +
Sbjct: 573 LKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLFINNNYI 629



 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 50   LKGVHVLRNLRVLYMSNNLVKEWSEF 75
            L+ VH  R + ++   N L+ EWS F
Sbjct: 1118 LEAVHASRRVLIVLTRNFLLTEWSRF 1143



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 13  KLRILSLGRNYIKSFAGMESLGDTLEELWVSYNLIEKLKGVHVLRNLRVLYMSNNLVKEW 72
           +L  + L  N++    G+ +   +L  L +S N IE      +  NL+ L +  N ++  
Sbjct: 527 RLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWFDYAFIPGNLKWLDIHGNFIESL 586

Query: 73  SEFNKLQD 80
             + K++D
Sbjct: 587 GNYYKIRD 594


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 255 DNHAAFQAQFRLTANFEQHWHLQANLSTDN 284
           D  + F+    +  NF+++ ++Q N+S DN
Sbjct: 161 DEKSLFENGVEIGINFDKYDNIQVNVSGDN 190


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 116 KLDGETVLREDDPPLTVANMQIKRIYTSSE 145
           K+D +  L++        N+ +KRI+TSS+
Sbjct: 137 KMDHQLPLKQRSSEFCGKNIGMKRIFTSSQ 166


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 96  DACELDTWRSEAARRLPNLKKLDGETVLREDDPPL 130
           D C L T  +++    P   K DG     E  PPL
Sbjct: 606 DVCVLKTDTNQSCPSPPVTTKRDGTQETEERLPPL 640


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,581
Number of Sequences: 429
Number of extensions: 3520
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 286
length of database: 140,377
effective HSP length: 57
effective length of query: 229
effective length of database: 115,924
effective search space: 26546596
effective search space used: 26546596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)