Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
         (91 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.17 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    20   3.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      19   8.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      19   8.4  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 0.17
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 16  PTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEF---RYLSDIPRRCEATAQ 72
           PT P  K    T  +VN +      Y         A  ++EF    Y+S  PRRCE  AQ
Sbjct: 50  PT-PSDKLNTSTTSSVNVNDQNIRRYRTAFTREQLARLEKEFFKENYVSR-PRRCELAAQ 107

Query: 73  TANIPNA 79
             N+P +
Sbjct: 108 -LNLPES 113


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 10  GGSIPDPTLPHLKYGMFTKKNVNRSTN 36
           GGS   P +  L    F  K +NR  N
Sbjct: 165 GGSTRIPKIQQLIKDFFDGKELNRGIN 191


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 28  KKNVNRSTNAFANYMRQI 45
           K ++ +  NAF  YM+++
Sbjct: 476 KPHIKKPLNAFMLYMKEM 493


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 28  KKNVNRSTNAFANYMRQI 45
           K ++ +  NAF  YM+++
Sbjct: 368 KPHIKKPLNAFMLYMKEM 385


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,359
Number of Sequences: 317
Number of extensions: 814
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 91
length of database: 114,650
effective HSP length: 47
effective length of query: 44
effective length of database: 99,751
effective search space:  4389044
effective search space used:  4389044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.6 bits)
S2: 37 (19.0 bits)