Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   1.0  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    25   1.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   3.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    24   4.1  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    23   5.5  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    23   5.5  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    23   5.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    23   7.2  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.6  

>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 41  YMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQSHVAS 85
           Y+    EL +   DE   +   + RR   T  T NIP     V S
Sbjct: 336 YIEDANELRRVILDEVLNFRQKVRRRSHPTNPTVNIPQPAQTVPS 380


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 60  LSDIPRRCEATAQTANIPNAQSHVASAQK 88
           ++D+P       + A++PNA   VA+A+K
Sbjct: 333 MADVPMPYSHPVEAASVPNADVVVAAAKK 361


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 14  PDPTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRCE 68
           P+ TL    +     + + R+ N F+NY R I+ L +  + E   + +  P R +
Sbjct: 814 PEYTLRTRIWASLRTQTLYRTINGFSNYSRAIKLLYRTETPELVEWTNGDPVRLD 868


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 30  NVNRSTNAFANYMRQIEELPQAGSDEEFRY 59
           NV+ ST   A+  + +  LPQA S ++FRY
Sbjct: 150 NVSVSTTNLAS--KPVISLPQADSIDKFRY 177


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 15  DPTLPHLKYGMFTKKNVNRSTNAFANYMRQIEE 47
           DPT PH K     +K ++ S    +N + Q ++
Sbjct: 617 DPTNPHFKRTKTVEKIMDESRKRRSNQLEQTQD 649


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 22  KYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLS 61
           K+    +K+ NR+   FANY+ ++E L ++   E   YL+
Sbjct: 551 KFEFEREKSTNRN---FANYVHEVERLRESRKLELNGYLT 587


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 28  KKNVNRSTNAFANYMRQIEELPQAGSDE-EFRYLSDIPRRCEATAQTANIPNAQSHVAS 85
           +    +S+   ++  ++I  LP       +F   SD  +  + + QT+N+P+  S V S
Sbjct: 210 QNGTRKSSVKMSDLGKRIASLPVVKRPPIQFSISSDYIKPVDKSDQTSNVPSPSSSVGS 268


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 28  KKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTAN 75
           K ++    + F N  R+I +LP    DE    + D+P     +    N
Sbjct: 69  KSHIKSDWHRF-NTKRKITKLPPVSQDEFESIIEDLPESLSGSESETN 115


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 16  PTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDI 63
           P L  L+    TK  +        N  +++EE+ +  ++ E RYL  +
Sbjct: 64  PKLSSLEENKLTK--LKAPIEDMENTKKELEEIRKQSTETELRYLKSL 109


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,152
Number of Sequences: 5004
Number of extensions: 15499
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 2,362,478
effective HSP length: 61
effective length of query: 30
effective length of database: 2,057,234
effective search space: 61717020
effective search space used: 61717020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)