GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
         (91 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1MNT6 Cluster: NA; n=1; Lawsonia intracellularis PHE/M...    34   0.48 
UniRef50_Q0S2S1 Cluster: Putative uncharacterized protein; n=2; ...    33   0.84 
UniRef50_A5K7E2 Cluster: DNA repair protein RAD23, putative; n=1...    33   0.84 
UniRef50_Q73P62 Cluster: RNA polymerase sigma-70 factor family p...    32   1.9  
UniRef50_A5KAW4 Cluster: Ser/Arg-rich splicing factor, putative;...    32   2.6  
UniRef50_A2DGP7 Cluster: Putative uncharacterized protein; n=1; ...    31   4.5  
UniRef50_Q24Y45 Cluster: Putative uncharacterized protein; n=4; ...    31   5.9  
UniRef50_A6DPG2 Cluster: Putative uncharacterized protein; n=1; ...    30   7.8  
UniRef50_Q86P98 Cluster: GM08204p; n=4; Sophophora|Rep: GM08204p...    30   7.8  

>UniRef50_Q1MNT6 Cluster: NA; n=1; Lawsonia intracellularis
          PHE/MN1-00|Rep: NA - Lawsonia intracellularis (strain
          PHE/MN1-00)
          Length = 254

 Score = 34.3 bits (75), Expect = 0.48
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 21 LKYGMFTK-KNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRCEAT-----AQTA 74
          +KY  F K KN+  S+N  A  +  I+E   A  D++ + L +  R+C  T      QT 
Sbjct: 1  MKYQKFLKMKNLLESSNQQAQEILSIQESLSARMDDDLKGLGETSRQCTETLRRLEEQTT 60

Query: 75 NIPNAQSHVASAQKLQ 90
           I   +S + SA++++
Sbjct: 61 EIQGIRSTILSARQMK 76


>UniRef50_Q0S2S1 Cluster: Putative uncharacterized protein; n=2;
           Nocardiaceae|Rep: Putative uncharacterized protein -
           Rhodococcus sp. (strain RHA1)
          Length = 257

 Score = 33.5 bits (73), Expect = 0.84
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 22  KYGMFTKKNVNRSTNAFANYMRQIEELPQAGS-DEEFRYLSDIPRRCEATAQ 72
           K G+ +++NVNR T+A A  +R++ E   AG  D+  +  + +P    A A+
Sbjct: 54  KMGLVSEENVNRETDALARCVREVVEFVDAGGWDQPPQMFALVPTELLAAAE 105


>UniRef50_A5K7E2 Cluster: DNA repair protein RAD23, putative; n=1;
           Plasmodium vivax|Rep: DNA repair protein RAD23, putative
           - Plasmodium vivax
          Length = 406

 Score = 33.5 bits (73), Expect = 0.84
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 25  MFTKKN--VNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQSH 82
           +F+ KN     S+++ AN ++  E+ P   +D++    +  P   E   Q+ N+ NA+S 
Sbjct: 75  IFSSKNNQTKESSSSSANVLKSKEKTPLPANDDQ---KNAAPTAAEEGGQSKNLNNAESA 131

Query: 83  VASAQKLQE 91
           + + +KL+E
Sbjct: 132 LVTGEKLKE 140


>UniRef50_Q73P62 Cluster: RNA polymerase sigma-70 factor family
          protein; n=1; Treponema denticola|Rep: RNA polymerase
          sigma-70 factor family protein - Treponema denticola
          Length = 286

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 27 TKKNVNRSTNAFANYMRQIEELPQAGSDEEFRY 59
          TK N +   N+ A Y+++I ++P   ++EE +Y
Sbjct: 5  TKNNYDAEMNSLATYLKEINQIPLLTAEEEIKY 37


>UniRef50_A5KAW4 Cluster: Ser/Arg-rich splicing factor, putative;
           n=6; Plasmodium|Rep: Ser/Arg-rich splicing factor,
           putative - Plasmodium vivax
          Length = 328

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 10  GGSIPDPTLPHLKYGMFT--KKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRC 67
           GG IP    P+ KY  +   K+ +++S + + +Y R         S E  RY +   RR 
Sbjct: 104 GGGIPPGPYPYRKYSDYRMRKRYISKSNSRYRSYSRDKIRRRDDRSRERIRYRNSYDRRM 163

Query: 68  EA 69
           E+
Sbjct: 164 ES 165


>UniRef50_A2DGP7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 391

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 16  PTLPHLKYGMFTKKNVNRS----TNAFANYMRQIEELPQAGSD--EEFRYLSDIPRRCEA 69
           P+LP +  G+F +K  N      T   A  M+++   P +  +  E+F  + D+P+  E 
Sbjct: 110 PSLPPVPEGIFPEKQENDDDGIKTEELAMDMQRVTLNPGSKREMGEKFGIVVDVPKNIEP 169

Query: 70  TAQTANIPNAQSH 82
           T   A + N Q H
Sbjct: 170 TQFVATVINPQRH 182


>UniRef50_Q24Y45 Cluster: Putative uncharacterized protein; n=4;
           Desulfitobacterium hafniense|Rep: Putative
           uncharacterized protein - Desulfitobacterium hafniense
           (strain Y51)
          Length = 334

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 18  LPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSD 54
           LPH ++G + ++ V  S     NYMR   E  QAG D
Sbjct: 99  LPHGEWGKWLEEYVEYSQATAENYMRVAREYGQAGGD 135


>UniRef50_A6DPG2 Cluster: Putative uncharacterized protein; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Putative
           uncharacterized protein - Lentisphaera araneosa HTCC2155
          Length = 132

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 19  PHLKYGMFTKKNVNRSTNAFANYMRQI-EELPQAGSDEEFRYLSDIPRRCEATAQTANIP 77
           P +  GM      +     F+N +  + E LP    D  F  L+++PR+ E  A  A   
Sbjct: 36  PEITQGMKDIGITDMEIYIFSNRLFMVMETLPDFDHDSAFAKLANMPRQSEWEASMAKFQ 95

Query: 78  NAQSHVASAQKLQ 90
           N  ++ ++  K Q
Sbjct: 96  NTSANASADDKWQ 108


>UniRef50_Q86P98 Cluster: GM08204p; n=4; Sophophora|Rep: GM08204p -
           Drosophila melanogaster (Fruit fly)
          Length = 520

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 36  NAFANYMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTAN-IPNAQSHVASAQ 87
           N   +Y ++ EE+     ++E+R L++  R+  ATA TAN  P++ + V +AQ
Sbjct: 327 NRALSYTKRAEEIKNCIIEDEYRMLAERQRQA-ATAATANQEPSSATQVPAAQ 378


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.312    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,976,025
Number of Sequences: 1657284
Number of extensions: 3482507
Number of successful extensions: 6229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6226
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 575,637,011
effective HSP length: 69
effective length of query: 22
effective length of database: 461,284,415
effective search space: 10148257130
effective search space used: 10148257130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)