GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
         (91 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0219 - 12802254-12802571                                         27   1.9  
01_06_0716 - 31425189-31426460                                         27   1.9  
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    27   2.6  
10_07_0059 + 12475452-12475785,12475889-12476523                       25   5.9  
01_06_0683 - 31173763-31174635,31175146-31175436                       25   7.8  

>04_03_0219 - 12802254-12802571
          Length = 105

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 8  VDGGSIPDPTLPH 20
          VDGG+IP P+LPH
Sbjct: 39 VDGGAIPLPSLPH 51


>01_06_0716 - 31425189-31426460
          Length = 423

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 11  GSIPDP--TLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSD 54
           G IPD   TLP L+        +N S   F + MR ++EL   G+D
Sbjct: 262 GRIPDTVSTLPELEVLNLGSNRLNGSIPQFLSEMRGLKELNLEGND 307


>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 28  KKNVNR-STNAFANYMRQIEELPQAGS---DEEFRYLSDIPRRCEATAQTANIPNAQSHV 83
           KK+ N  +T  F + +  IEE+ Q GS     + R L+   R     +   NIP  +SH+
Sbjct: 667 KKHWNSFTTTFFLDSVDVIEEIDQRGSATISSDDRVLAMELRCHRCRSAHPNIPKLKSHI 726

Query: 84  ASAQ 87
           AS +
Sbjct: 727 ASCK 730


>10_07_0059 + 12475452-12475785,12475889-12476523
          Length = 322

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 4  REASVDGGSIPDPTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDE 55
          R  ++ GG+I    +P  + G  TKKN  R  +   ++    EE   AG D+
Sbjct: 20 RARAMCGGAILADLIPSPRSGGHTKKNKRRRISDDEDFEAAFEEF-DAGDDD 70


>01_06_0683 - 31173763-31174635,31175146-31175436
          Length = 387

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 39  ANYMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQSHVASA 86
           +NYM + ++       ++ + +S IP        TA++P+AQ+  ASA
Sbjct: 108 SNYMNEGDDAFATEDLQKLQLISGIP---SGGFSTASVPSAQAQAASA 152


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,411
Number of Sequences: 37544
Number of extensions: 91252
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 5
length of query: 91
length of database: 14,793,348
effective HSP length: 69
effective length of query: 22
effective length of database: 12,202,812
effective search space: 268461864
effective search space used: 268461864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)