Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
(91 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.40
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016) 27 2.1
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19) 27 2.1
SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20) 26 3.7
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 25 6.4
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 25 6.4
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05) 25 6.4
SB_34639| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-25) 25 6.4
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 25 6.4
>SB_34905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 0.40
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 33 RSTNAFANYMRQIEELPQA--GSDEEFRYLSDIPRRCEATAQTANIPNAQSHVAS 85
R T + + ++ + PQ G +E + + R+C+ A +PNA S ++S
Sbjct: 147 RETRIITSLLPEVRQKPQPLKGQYDEVLKIRPLARKCKDQALNYQVPNAPSEISS 201
>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 50 QAGSDEEFRYLSDIPRRCEATAQTANIPNAQSHVASAQK 88
+A D++ R + D+ R +Q + NAQ+H+A QK
Sbjct: 750 KAQLDQQLRKIHDLERENSRVSQ--ELKNAQAHIAQKQK 786
>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
Length = 800
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 58 RYLSDIPRRCEATAQTANIPNAQSHVASAQKLQE 91
RYL D P+R E+T + P A A A +++E
Sbjct: 610 RYLGDEPQRRESTGEFVIHPKAPGEPADAGEVEE 643
>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
Length = 2253
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 20 HLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDI 63
H K G K + +FANY +Q E A SD E + S I
Sbjct: 1276 HKKIGSEVKYIYLKCVVSFANYQKQQNEKRSAKSDSESKQTSGI 1319
>SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20)
Length = 293
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 48 LPQAGSDEEFRYLSDIPRRCEATAQTANI 76
+P G DEE Y+ C A TA I
Sbjct: 157 IPSIGRDEEGEYVCQAENSCSAAKSTAQI 185
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 25 MFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDI 63
+F K NRS +A+++Y Q ++ +A YL+D+
Sbjct: 25 LFKKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLNDV 63
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 25 MFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDI 63
+F K NRS +A+++Y Q ++ +A YL+D+
Sbjct: 267 LFKKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLNDV 305
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 10 GGSIPDPTLPHLK--YGMFTKKNVNRSTNAFANYMRQIEELPQA 51
G + D T+ L+ YG ++N+N+ + N I+++ QA
Sbjct: 465 GHRLSDKTISKLQEYYGKAIRRNINKKAKSQKNIDNSIDQMSQA 508
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 2 NKREASVDGGSIPDPTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLS 61
N E+ +DG IP+ +P LK T+ + +S FAN R++ + + LS
Sbjct: 120 NASESILDG-PIPEIDVPILKPSKPTRSSHVQSLKHFAN--REVNSIKSELDEFADWILS 176
Query: 62 DIPRRCEATAQTA 74
+P + TA+ A
Sbjct: 177 YVPEPVKKTAKEA 189
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 25 MFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDI 63
+F K NRS +A+++Y Q ++ +A YL+D+
Sbjct: 519 LFKKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLNDV 557
>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 25 MFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDI 63
+F K NRS +A+++Y Q ++ +A YL+D+
Sbjct: 467 LFKKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLNDV 505
>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
Length = 856
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 2 NKREASVDGGSIPDPTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLS 61
N E+ +DG IP+ +P LK T+ + +S FAN R++ + + LS
Sbjct: 120 NASESILDG-PIPEIDVPILKPSKPTRSSHVQSLKHFAN--REVNSIKSELDEFADWILS 176
Query: 62 DIPRRCEATAQTA 74
+P + TA+ A
Sbjct: 177 YVPEPVKKTAKEA 189
>SB_34639| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-25)
Length = 941
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 12 SIPDPTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAG 52
S+P+ LK M+ KK + R A+Y + IE++ + G
Sbjct: 216 SMPNNREQALKRVMWQKKKMERDARYHADYKKFIEDMMKKG 256
>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 10 GGSIPDPTLPHLK--YGMFTKKNVNRSTNAFANYMRQIEELPQA 51
G + D T+ L+ YG ++N+N+ + N I+++ QA
Sbjct: 414 GHRLSDKTISKLQEYYGKAIRRNINKKAKSQKNIDNSIDQMSQA 457
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 25 MFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDI 63
+F K NRS +A+++Y Q ++ +A YL+D+
Sbjct: 603 LFKKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLNDV 641
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.126 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,236
Number of Sequences: 59808
Number of extensions: 100361
Number of successful extensions: 152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 15
length of query: 91
length of database: 16,821,457
effective HSP length: 68
effective length of query: 23
effective length of database: 12,754,513
effective search space: 293353799
effective search space used: 293353799
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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