GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
         (91 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-17|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    28   0.73 
AL132860-16|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    28   0.73 
Z83120-1|CAB05583.1|  837|Caenorhabditis elegans Hypothetical pr...    28   0.97 
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    26   3.0  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    26   3.0  
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical...    26   3.9  
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    25   5.2  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    25   6.8  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    25   6.8  
AL023828-18|CAA19462.2|  742|Caenorhabditis elegans Hypothetical...    25   9.0  
AJ132699-1|CAA10735.1|  742|Caenorhabditis elegans centaurin bet...    25   9.0  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    25   9.0  
AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna bin...    25   9.0  
AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna bin...    25   9.0  
AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna bin...    25   9.0  

>AL132860-17|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
          protein Y56A3A.17b protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 24 GMFTKKNVNRSTNAFANYMRQIEELPQAGS-DEEFRYLSDIPRRCEATAQTANIPNAQSH 82
          G FT+KN    +    +YM  + +L Q    D++      +PRR E +++++    A   
Sbjct: 36 GYFTEKNHYDFSGTMKSYMDHVAQLKQIYKVDDDVAADMTVPRRTENSSESSGETVAPRK 95

Query: 83 VASA 86
          +A A
Sbjct: 96 IAKA 99


>AL132860-16|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
          protein Y56A3A.17a protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 24 GMFTKKNVNRSTNAFANYMRQIEELPQAGS-DEEFRYLSDIPRRCEATAQTANIPNAQSH 82
          G FT+KN    +    +YM  + +L Q    D++      +PRR E +++++    A   
Sbjct: 36 GYFTEKNHYDFSGTMKSYMDHVAQLKQIYKVDDDVAADMTVPRRTENSSESSGETVAPRK 95

Query: 83 VASA 86
          +A A
Sbjct: 96 IAKA 99


>Z83120-1|CAB05583.1|  837|Caenorhabditis elegans Hypothetical
           protein R06A4.2 protein.
          Length = 837

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 46  EELPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQSHVAS 85
           E LP +   +  +  SDIPR  E   +   IPN  SH AS
Sbjct: 675 ELLPNSCRVKMEKSYSDIPRSAEPVFKVPMIPNRLSHSAS 714


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 26  FTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSD 62
           F+KK +    +  + +MR+ ++  Q G  EE+ Y  D
Sbjct: 688 FSKKKIEERKDWLSKWMREKKDRKQQGLAEEYLYNKD 724


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 26  FTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSD 62
           F+KK +    +  + +MR+ ++  Q G  EE+ Y  D
Sbjct: 688 FSKKKIEERKDWLSKWMREKKDRKQQGLAEEYLYNKD 724


>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
           protein T05H4.3 protein.
          Length = 1152

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 8   VDGGSIPDPTLPHLKYGMFTK-KNVNRSTNAFANYMRQIEELPQAGS-DEEFRYLSDIPR 65
           +   SI + ++  L   +  K KN+N S NA + +   + +LP   S D     +  I R
Sbjct: 911 ISNNSISNTSILRLGIPLLLKLKNINLSQNALSRFDCSLFDLPNLESVDLSNNSIKTIIR 970

Query: 66  RCEATAQTANIPN 78
           R   T  + N+ N
Sbjct: 971 RPLKTLTSLNLQN 983


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 22  KYGMFTKKNVNRSTNAFANYMRQIEE 47
           KYG F    +  S N F N M++ EE
Sbjct: 193 KYGAFVNLYLVSSVNTFYNLMKEYEE 218


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
            C03D6.4 protein.
          Length = 1390

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 4    REASVDGGSIPDPTLPHLKYGM 25
            + +SV GGS+  PT+P++  GM
Sbjct: 1173 KPSSVFGGSVTAPTVPNVDDGM 1194


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 52  GSDEEFRYLSDIPRRCEATAQTANIPNAQS-HVASAQKL 89
           GSD E   LS+ P   E  + + + P+A S HV S+  L
Sbjct: 517 GSDSERENLSNAPSLHEFPSSSTSSPHATSEHVTSSSPL 555


>AL023828-18|CAA19462.2|  742|Caenorhabditis elegans Hypothetical
           protein Y17G7B.15b protein.
          Length = 742

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 4   REASVDGGSIPDPTLPHLKYGM 25
           R++SVD GSI D  L   K G+
Sbjct: 134 RDSSVDSGSITDKALKDKKRGL 155


>AJ132699-1|CAA10735.1|  742|Caenorhabditis elegans centaurin beta
           1B protein.
          Length = 742

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 4   REASVDGGSIPDPTLPHLKYGM 25
           R++SVD GSI D  L   K G+
Sbjct: 134 RDSSVDSGSITDKALKDKKRGL 155


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 22  KYGMFTKKNVNRSTNAFANYMRQIEELPQA 51
           KYG F    +  + N F N M++ EE   A
Sbjct: 188 KYGAFVNLYLISAVNTFYNLMKEYEEAEAA 217


>AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna
          binding protein) familyprotein 2, isoform a protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 37 AFANYMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQ 80
          AF N    +E L    +DEE   +  +  +CE + ++A +P+A+
Sbjct: 43 AFPNVFHHLERL----ADEEINKVRVVLFQCEFSKESAPLPDAE 82


>AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform c protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 37  AFANYMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQ 80
           AF N    +E L    +DEE   +  +  +CE + ++A +P+A+
Sbjct: 85  AFPNVFHHLERL----ADEEINKVRVVLFQCEFSKESAPLPDAE 124


>AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna
          binding protein) familyprotein 2, isoform b protein.
          Length = 403

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 37 AFANYMRQIEELPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQ 80
          AF N    +E L    +DEE   +  +  +CE + ++A +P+A+
Sbjct: 43 AFPNVFHHLERL----ADEEINKVRVVLFQCEFSKESAPLPDAE 82


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,548
Number of Sequences: 27539
Number of extensions: 81557
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 15
length of query: 91
length of database: 12,573,161
effective HSP length: 69
effective length of query: 22
effective length of database: 10,672,970
effective search space: 234805340
effective search space used: 234805340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)