GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
         (91 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.065
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   1.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   1.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   4.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   7.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   9.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.2 bits (55), Expect = 0.065
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 48  LPQAGSDEEFRYLSDIPRRCEATAQTANIPNAQSHVASAQKLQE 91
           +P+  SDE+   L  +  +   T   A+  + ++H++ AQKLQ+
Sbjct: 128 MPEKMSDEKISTLYALGAKIIRTPTEASWHSPEAHISVAQKLQK 171


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
          preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 43 RQIEELPQAGSDEEFRYLSDIPRRC 67
          RQ  E   A    E RY+ D+P RC
Sbjct: 37 RQSLEARSADLVPEPRYIIDVPPRC 61


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 37 AFANYMRQIEELPQAGSDEEFRYLSDIPRRC 67
          A +N M+ +E    A    E RY+ D+P RC
Sbjct: 32 AVSNDMQPLEAR-SADLVPEPRYIIDVPPRC 61


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 37  AFANYMRQIEELPQAGSDEEFRYLSDI 63
           +FA + ++I       SDEE   LS I
Sbjct: 351 SFAQFSQEIGLASLGASDEEIEKLSTI 377


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 22  KYGMFTKKNVNRSTNAFANYMRQIEELP 49
           KY  +   N       + NY+  IE++P
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINIEQIP 117


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 52  GSDEEFRYLSDIPRRCEAT 70
           GSD+E   +    +RC AT
Sbjct: 349 GSDQEVAGVMRAVKRCNAT 367


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 10  GGSIPDPTLP 19
           GGS+P P  P
Sbjct: 153 GGSLPTPVTP 162


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,903
Number of Sequences: 429
Number of extensions: 1103
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 91
length of database: 140,377
effective HSP length: 48
effective length of query: 43
effective length of database: 119,785
effective search space:  5150755
effective search space used:  5150755
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.6 bits)
S2: 37 (19.0 bits)