GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001687-TA|BGIBMGA001687-PA|undefined
         (91 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63105.1 68414.m07129 hypothetical protein                          29   0.52 
At3g50370.1 68416.m05508 expressed protein                             28   0.91 
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   0.91 
At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi...    27   2.1  
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    26   2.8  
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ...    26   3.7  
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co...    25   6.4  
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    25   8.5  
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    25   8.5  

>At1g63105.1 68414.m07129 hypothetical protein
          Length = 122

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 17 TLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSD--EEFRYLSDIPRRCEATAQ 72
          T  H+ Y    +  V RSTN+  N++R ++E+ + G D  E+ +   DI R+    A+
Sbjct: 30 TAKHVAY----RVGVIRSTNSDPNFLRDLDEVDKMGDDVFEKSKTALDIMRKAVVDAK 83


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26  FTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRC--EATAQTANIPNAQSHV 83
           ++ K    ST   ANY+     LP +G DE  R+ + +  RC  +++    + P++  H+
Sbjct: 824 YSHKGRTNST-VLANYIEDHHVLPGSGIDEHRRFDTKLTGRCDSQSSLSVTSPPDSPVHL 882

Query: 84  A 84
           +
Sbjct: 883 S 883


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 5   EASVDGGSIPDPTLPHLKYGMFTKKNVNRSTNAFANYMR 43
           E+ +D GSI    + H ++G+FT+ +V   T   + Y +
Sbjct: 89  ESCIDSGSIHLGRILHARFGLFTEPDVFVETKLLSMYAK 127


>At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 889

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 26  FTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPR-RCEATAQTANIPNAQSHVA 84
           F++ ++NR  +  +N++R+   +     +EE + +  +PR R E  A + ++ N  S  +
Sbjct: 49  FSEPSLNRHRDGQSNHLRRPSPMRGLPMEEETKPIVYLPRIRSEVFASSPSLLNLYSPSS 108

Query: 85  SAQKLQE 91
           S+   QE
Sbjct: 109 SSPINQE 115


>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
          contains similarity to SKP1 interacting partner 2
          GI:10716949 from [Arabidopsis thaliana]; contains Pfam
          PF00646: F-box domain
          Length = 554

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 11 GSIPDPTLPHLK-YGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRC 67
          GS  +   PH +  G  T K   RS   F + +        +G+DE + Y+S++P  C
Sbjct: 25 GSRREHCEPHRRRMGQSTSK-FRRSKTTFTSPVLPNLREQNSGADEPYDYISNLPDEC 81


>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
           plastid heme oxygenase (HY1) [Arabidopsis thaliana]
           GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
           GI:4530591 GB:AF132475; annotation updated per Seth J.
           Davis at University of Wisconsin-Madison
          Length = 282

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 10  GGSIPDPTLPHLKYGMFTKKNVNRSTNAFANYMRQIEELPQAG 52
           G  IP+PT P   Y  + K+   +   AF  +   I     AG
Sbjct: 167 GYEIPEPTAPGKTYSQYLKELAEKDPQAFICHFYNIYFAHSAG 209


>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 20  HLKYGMFTKKNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPRRC 67
           H K     ++ V    +AFA+ + +I EL     + + +   DIP  C
Sbjct: 481 HSKMEREEEEPVESGNSAFASQLMRIMELLDGNLETKSKQYKDIPLSC 528


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 28  KKNVNRSTNAFANYMRQIEELPQ-AGSDEEF 57
           K  +N   N FAN +  + +LPQ A  D EF
Sbjct: 794 KNKINMDFNHFANRVNDMWQLPQFASLDLEF 824


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 29  KNVNRSTNAFANYMRQIEELPQAGSDEEFRYLSDIPR 65
           +N +   N   N+MR++EEL  +G    +  LSD  R
Sbjct: 643 ENSHAEVNKAWNHMRRVEELMNSGR-ANYSVLSDCSR 678


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,600
Number of Sequences: 28952
Number of extensions: 74670
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 12,070,560
effective HSP length: 69
effective length of query: 22
effective length of database: 10,072,872
effective search space: 221603184
effective search space used: 221603184
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)