GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001686-TA|BGIBMGA001686-PA|undefined
         (359 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 15/76 (19%), Positives = 28/76 (36%)

Query: 103  DNSQLMETSNLDLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNY 162
            D     +++ LD S +     +    E R++  +       Q Q   Q   + Q    N+
Sbjct: 1410 DEDSTRDSTKLDRSSREREVHNGGQQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNH 1469

Query: 163  NKTDENFYVPPIDREA 178
                 N Y  P D+++
Sbjct: 1470 YPDLHNLYAVPTDKKS 1485


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 144 QMQNVSQNISEDQLDLSNYNKTDENFYV 171
           ++ N   ++ +  L ++N  KT+E +Y+
Sbjct: 727 KLSNPDISVEDGTLSINNIQKTNEGYYL 754


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 301 NKYKFNLEDLCKQLKF 316
           N YK+N  + CK+L +
Sbjct: 94  NNYKYNYNNNCKKLYY 109


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,830
Number of Sequences: 429
Number of extensions: 4464
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 359
length of database: 140,377
effective HSP length: 59
effective length of query: 300
effective length of database: 115,066
effective search space: 34519800
effective search space used: 34519800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)