Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001686-TA|BGIBMGA001686-PA|undefined
(359 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 36 0.032
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 33 0.22
At3g26390.1 68416.m03291 hypothetical protein 32 0.51
At1g62010.1 68414.m06994 mitochondrial transcription termination... 31 1.2
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 31 1.2
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to... 31 1.6
At4g27595.1 68417.m03964 protein transport protein-related low s... 31 1.6
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 30 2.1
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 30 2.7
At5g61570.1 68418.m07726 protein kinase family protein contains ... 30 2.7
At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box p... 30 2.7
At4g30720.1 68417.m04354 expressed protein hypothetical protein ... 30 2.7
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 30 2.7
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 30 2.7
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 30 2.7
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 29 3.6
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 3.6
At1g03080.1 68414.m00282 kinase interacting family protein simil... 29 3.6
At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative s... 29 4.8
At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containi... 29 4.8
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 29 6.3
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 29 6.3
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 29 6.3
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 29 6.3
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 28 8.4
At3g22860.1 68416.m02882 eukaryotic translation initiation facto... 28 8.4
At2g38720.1 68415.m04755 microtubule associated protein (MAP65/A... 28 8.4
At1g57780.1 68414.m06556 heavy-metal-associated domain-containin... 28 8.4
At1g06950.1 68414.m00738 chloroplast inner envelope protein-rela... 28 8.4
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 36.3 bits (80), Expect = 0.032
Identities = 47/207 (22%), Positives = 101/207 (48%), Gaps = 26/207 (12%)
Query: 31 DNFKDTECTILRDEITSKRNVALEVCDTLYVGAEEQEELGKTIIMARNKKTGKVRIIEVG 90
DN +D E L++E ++ A E+ + Y+ A++ E KT R ++ V+++E G
Sbjct: 2203 DNLQD-EVLNLKEEFGKMKSEAKEM-EARYIEAQQIAESRKTYADEREEE---VKLLE-G 2256
Query: 91 TVDLKPYLKVDLDNSQLMETSNLDLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQ 150
+V+ Y L+N + + R QRE+L++ + T+ QM++ ++
Sbjct: 2257 SVEELEYTINVLENKVNVVKDEAERQRL-----------QREELEMELHTIRQQMES-AR 2304
Query: 151 NISEDQ---LDLSNYNKTDENFYVPPIDREAKSVEQVYDLDKILTEDMFE-KVYEEMENT 206
N E+ LD + + ++ ++R + +Q ++ + L+E + E ++ E + +
Sbjct: 2305 NADEEMKRILDEKHMDLAQAKKHIEALER--NTADQKTEITQ-LSEHISELNLHAEAQAS 2361
Query: 207 DYMSNFNEFLKTIVSENMPKKHLVLAL 233
+YM F E L+ + + P+ H+ A+
Sbjct: 2362 EYMHKFKE-LEAMAEQVKPEIHVSQAI 2387
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 125 KKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDREAKSVEQV 184
+K+++ + ++ + + +Q N + N SE++ D+ K DEN +D E+K VE V
Sbjct: 272 EKLIKNEDDIEEKTEEMKEQDNNQA-NKSEEEEDVKK--KIDENETPEKVDTESKEVESV 328
Query: 185 YDLDKILTEDMFEKVYEEMENTD 207
+ + E++ E+ E +E +
Sbjct: 329 EETTQEKEEEVKEEGKERVEEEE 351
>At3g26390.1 68416.m03291 hypothetical protein
Length = 166
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 123 KHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNY---NKTDENFYVPPIDREAK 179
K +++M + K K+N TD + V S+D+ L Y K Y P +R+
Sbjct: 10 KKRRLMISKGKRKINEDETTDLIVRVGAFASDDKTLLKRYEGFKKYVVVLYTDPEERDQT 69
Query: 180 SVEQVYDLDKI 190
V +VY DK+
Sbjct: 70 QVIKVYHGDKL 80
>At1g62010.1 68414.m06994 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 415
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 176 REAKSVEQVYDLDKILTEDMFEKVYEEMENTDYMSNFNEFLKTIVSENMPKKHLVLALYA 235
RE KS+ + YD K++ E YE++ ++ N + + +P+K L+L L +
Sbjct: 137 REGKSLSRYYDFIKVIIEADKSSKYEKISHSLAQGNKIRNILVLRELGVPQKRLLLLLIS 196
Query: 236 NS 237
S
Sbjct: 197 KS 198
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 31.1 bits (67), Expect = 1.2
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 99 KVDLDNSQLMETSNLDLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLD 158
K L+N TSNL+L ++ + + ++ E L+ + + Q+++ + S++ D
Sbjct: 890 KTKLENQVEELTSNLELEKQMRMEIEEAKSQEIEALQSVLTDIKLQLRDTQETKSKEISD 949
Query: 159 LSNYNKTDENFYVPPIDREAKSVEQVYDLDKILTEDM---FEKVYEEMENTDYMSNFNEF 215
L + TD + +E KS +++ DL L +DM E++ + +E T+ ++ NE
Sbjct: 950 LQSV-LTDIKLQLRD-TQETKS-KEISDLQSAL-QDMQLEIEELSKGLEMTNDLAAENEQ 1005
Query: 216 LKTIVS 221
LK VS
Sbjct: 1006 LKESVS 1011
>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
Length = 639
Score = 30.7 bits (66), Expect = 1.6
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 43 DEITSKRNVALE-VCDTLYVGAEEQEELGKTIIMARNKKTGKVRII-EVGTVDLKPYLKV 100
+E ++ N L + + + +E + L + A K V ++ EV VD + K+
Sbjct: 45 EESKTQENAKLRSALEEMQLQFKETKALHLQEVEAAKKMAETVPVLQEVPVVDTELVEKL 104
Query: 101 DLDNSQLME-TSNLDLSRKFGSKKHK---KIMEQREKLKVNVQTVTDQMQNVSQNISEDQ 156
+N +L S+LD KK + KI E+R K + +T ++ + E
Sbjct: 105 TSENEKLKSLVSSLDQKIDETEKKFEERSKINEERLKQAIEAETTIVNLKTAVHELQEKI 164
Query: 157 LDLSNYNK 164
LD+ + NK
Sbjct: 165 LDVESENK 172
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 30.7 bits (66), Expect = 1.6
Identities = 34/164 (20%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 43 DEITSKRNVALEVCDTLYVGAEEQEELGKTIIMARNKKTGKVRIIEVGTVDLKPYLKVDL 102
+E+++ + +E L +E EEL + + A KK ++ + VD + L+ +
Sbjct: 685 EELSAAKESLVEKETKLLSTVQEAEELRRREL-ACLKKIEELSAVNERLVDKETKLQSSI 743
Query: 103 DNSQLMETSNLDLSRKFG--SKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLS 160
++++ + ++ S +++++E+ KL QTV + + + + S Q +
Sbjct: 744 QEVEVLKEREAENIKQIEELSLSNERLVEKEAKL----QTVVQENEELREKESAYQKKIE 799
Query: 161 NYNKTDENFYVPPIDREAKSVEQVYDLDKILTEDM-FEKVYEEM 203
+K DE F DREAK + +++ ++ + K EE+
Sbjct: 800 ELSKVDEIF----ADREAKLQSSTQENEELREREVAYLKKIEEL 839
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 68 ELGKTI--IMARNKKTGKVRIIEVGTVDLKPYLKVDLDNSQLMETSNLDLSRKFGSKKHK 125
ELG ++ ++ + K GK R I++G + N+ + +S+LD R F ++
Sbjct: 256 ELGGSVGKVVPFSVKLGKFRNIDIG--------EGTSSNNNIGNSSSLDERRCFSMGSYE 307
Query: 126 KIMEQREKLKVNVQTVTDQMQN 147
IM++ LKV+V T +N
Sbjct: 308 YIMDEETTLKVHVSTKKQSSKN 329
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 93 DLKPYLKVDLDNSQLMETSNLDLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNI 152
DLK + +D ++ + N L + +EQ +KL+ Q T +QN+ +
Sbjct: 541 DLKSENAMVVDKHKIEKEQNFQLRNQIAQLLQ---LEQEQKLQAQQQDST--IQNLQSKV 595
Query: 153 SEDQLDLSNYNKTDENFYVPPIDREAKSVEQVYDLDKILTEDMFEKVYEEMENTD 207
+ + LS K+D P++ + ++ E D + +K+ EE++ D
Sbjct: 596 KDLESQLSKALKSDMTRSRDPLEPQPRAAENTLDSSAVT-----KKLEEELKKRD 645
>At5g61570.1 68418.m07726 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 361
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 10 CPKDETERHPVIFNFQNGYITDNFKDTECTILRDEITSKRNVALEVCDTLYVGAE--EQE 67
C + TE + V ++ ++ Y F D + I L +CD L E +
Sbjct: 32 CRRTTTETNEVQYDVESPYEKQEFSDNGSETEEELIIFNGGEDLTICDILDAPGEVIGKS 91
Query: 68 ELGKTIIMARNKKTGKVRIIEVGTVDLKPYLKVDLDNSQ 106
G T+ A +++GKVR++ L+P V+ D+ +
Sbjct: 92 SYG-TLYKATLQRSGKVRVLRF----LRPLCAVNSDSKE 125
>At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box
protein, S.latifolia, EMBL:SLSLM3
Length = 322
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 139 QTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPP----IDREAKSVEQVYDLDKILT-E 193
+TV D+ V +N+ ED + +S+ + D + + +Q DLD++L E
Sbjct: 204 ETVEDRELVVHKNMDEDNIHVSDMDDKDTMLMISDKNNVLPENLDEFDQELDLDQLLDFE 263
Query: 194 DMFEKVYEEMENTDYMS 210
+E + + E DY S
Sbjct: 264 TNYESLLKSCEMEDYAS 280
>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
Synechocystis sp. (strain PCC 6803),PIR2:S76076
Length = 749
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 118 KFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLS 160
KFG++ ++E + V V T+Q+Q SQN+ D + L+
Sbjct: 397 KFGTRVDDLLVEDSRVVGVRVSDSTNQLQTTSQNLKVDAVVLA 439
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 103 DNSQLMETSNLDLSR-KFGSKKHKKIMEQ---REKLKVNVQTVTDQMQNVSQNISEDQLD 158
DN + + S+ D+ + K + K K I + ++ + + + DQ ++ Q++ E+Q
Sbjct: 158 DNEEAVTKSDSDVDQQKAKNVKGKNIGQDGDIKQDARDQEEKINDQEDSIKQDVDEEQNK 217
Query: 159 LSNYNKTDENFYVPPIDREAKSVEQVYDLDK 189
+S K EN V + + +Q D+ K
Sbjct: 218 ISGIEKVVENQEVKIMCEQKHGTKQDEDVTK 248
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.9 bits (64), Expect = 2.7
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 118 KFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDRE 177
KF HK +EQ N++ D++ N N E + LS + K D+N Y I E
Sbjct: 20 KFKETVHK--LEQESGFFFNMKYFEDEVHN--GNWDEVEKYLSGFTKVDDNRYSMKIFFE 75
Query: 178 AKSVEQVYDLDKILTEDMFEKVYEEMENTDYMSNFNEFL 216
+ + + LDK D + V +++ S FNE L
Sbjct: 76 IRKQKYLEALDK---HDRPKAVDILVKDLKVFSTFNEEL 111
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.9 bits (64), Expect = 2.7
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 118 KFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDRE 177
KF HK +EQ N++ D++ N N E + LS + K D+N Y I E
Sbjct: 20 KFKETVHK--LEQESGFFFNMKYFEDEVHN--GNWDEVEKYLSGFTKVDDNRYSMKIFFE 75
Query: 178 AKSVEQVYDLDKILTEDMFEKVYEEMENTDYMSNFNEFL 216
+ + + LDK D + V +++ S FNE L
Sbjct: 76 IRKQKYLEALDK---HDRPKAVDILVKDLKVFSTFNEEL 111
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 123 KHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDREAKSVE 182
+++KI+E+++K +Q++T + V + E LSN DE F D++ + +
Sbjct: 230 EYEKILEEKKKA---LQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKDD 286
Query: 183 QVYDLDKILTEDMFEKVYE 201
+ K ++ + F K E
Sbjct: 287 KEEKAKKAVSINEFLKPAE 305
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 132 EKLKVNVQTVTDQMQNVSQNISEDQLDLSNYN-KTDENF 169
+K+K V VT + Q++S N ED+ D S+ N DE F
Sbjct: 110 QKVKALVGKVTQKKQHMSHNEEEDEDDASDENYSADEGF 148
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 29.5 bits (63), Expect = 3.6
Identities = 54/263 (20%), Positives = 113/263 (42%), Gaps = 16/263 (6%)
Query: 63 AEEQEELGKTIIMARNKKTGKVRIIEVGTVDLKPYLKVDLDNSQLMETSNLDLSRKFGSK 122
++ QEEL T+ + ++ ++ +E L+ ++ D S+ + NL + S
Sbjct: 510 SQSQEELS-TLALELQNRSQILKDMEARNNGLQEEVQEAKDQSKSLNELNLSSAASIKSL 568
Query: 123 KHK--KIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDREAKS 180
+ + K+ E +KL+ V+ DQ + Q I + +LS K ++ V ++
Sbjct: 569 QEEVSKLRETIQKLEAEVELRVDQRNALQQEIYCLKEELSQIGKKHQSM-VEQVELVGLH 627
Query: 181 VEQVYDLDKILTEDMFE----KVYEEMENTDYMSNFNEFLKTIVSENMPKKHLVLALYAN 236
E K L E+ + + E +E T + E ++ +V +N+ ++ + L N
Sbjct: 628 PESFGSSVKELQEENSKLKEIRERESIEKTALIEKL-EMMEKLVQKNLLLENSISDL--N 684
Query: 237 SLLNMYGTLMKDITKKTYVACPHSASLN---DHILKNFLSIS-NNRKLRTPQM-KDKSLC 291
+ L +K + + + + L+ D ++ S + N++KL M + SL
Sbjct: 685 AELETIRGKLKTLEEASMSLAEEKSGLHSEKDMLISRLQSATENSKKLSEENMVLENSLF 744
Query: 292 HALVFVLLINKYKFNLEDLCKQL 314
+A V + + +LE+ C L
Sbjct: 745 NANVELEELKSKLKSLEESCHLL 767
>At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 357
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 116 SRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYV 171
+R+ ++++KI+E+++K +Q + + V + E LSN TDE ++
Sbjct: 228 AREMTLEEYEKILEEKKKA---LQATKVEERKVDTKVFESMQQLSNKKNTDEEIFI 280
>At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 657
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 194 DMFEKVYEEMENTDYMSNFNEFLKTIVS 221
D F KVY+EM++ Y+ N N F I S
Sbjct: 200 DRFWKVYKEMDSLGYVENVNTFNLVIYS 227
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 28.7 bits (61), Expect = 6.3
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 53 LEVCDTLYVGAEEQEELGKTIIMARNKKTGKVRIIEVGTVDLKPYLKVDLDNSQLMETSN 112
LE+ + ++ EL + + K GK+R ++ G DL L LD+ S
Sbjct: 98 LEMDTPTVISGDQDAELERRLAKKLKIKKGKLRGMDDGLNDLFEGLPSVLDSM----GSE 153
Query: 113 LDLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVP 172
L SRK K+ KK E+++ + + + +++ S+++ + K D +
Sbjct: 154 LGDSRK---KRKKKRSEEKQDHEDVDELANEDLEHEESEFSDEESEEEPVGKRDRKRH-- 208
Query: 173 PIDREAKSVEQVYDLDKI-LTED 194
++ KSV++ + D + +T+D
Sbjct: 209 --KKKKKSVDEELESDLMNITDD 229
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.7 bits (61), Expect = 6.3
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 118 KFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDRE 177
KF HK +EQ N++ D++ N N E + LS + K D+N Y I E
Sbjct: 20 KFKETVHK--LEQESGFFFNMKYFEDEVHN--GNWDEVEKYLSGFTKVDDNRYSMKIFFE 75
Query: 178 AKSVEQVYDLDKILTEDMFEKVYEEMENTDYMSNFNEFL 216
+ + + LD+ D + V +++ S FNE L
Sbjct: 76 IRKQKYLEALDR---HDRPKAVDILVKDLKVFSTFNEEL 111
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.7 bits (61), Expect = 6.3
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 118 KFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDRE 177
KF HK +EQ N++ D++ N N E + LS + K D+N Y I E
Sbjct: 20 KFKETVHK--LEQESGFFFNMKYFEDEVHN--GNWDEVEKYLSGFTKVDDNRYSMKIFFE 75
Query: 178 AKSVEQVYDLDKILTEDMFEKVYEEMENTDYMSNFNEFL 216
+ + + LD+ D + V +++ S FNE L
Sbjct: 76 IRKQKYLEALDR---HDRPKAVDILVKDLKVFSTFNEEL 111
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 28.7 bits (61), Expect = 6.3
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 29 ITDNFKDTECTILRDEITS-KRNVALEVCDTLYVGAEEQEELGKTIIMARNKKTGKVRII 87
+T N E IL++EI + K+N D+L + AE+ E L + +KT K +
Sbjct: 722 VTANLNQ-EIKILKEEIENLKKNQ-----DSLMLQAEQAENLRVDL-----EKTKKSVME 770
Query: 88 EVGTVDLKPYLKVDLDNS-QLMETSNLDLSRKFGSKKHKKIMEQR--EKLKVNVQTVTDQ 144
++ + K++L++ LM + L+ + K K ++ L+ ++TV Q
Sbjct: 771 AEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQ 830
Query: 145 MQNVSQNISEDQLDLSNYNKTDENFYVPPIDREAKSVEQ-VYDLDKILTE 193
++ ++SE+ L++ + K V + E K E+ + +L+K L E
Sbjct: 831 CDDLKHSLSENDLEMEKHKK-----QVAHVKSELKKKEETMANLEKKLKE 875
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 174 IDREAKSVEQVYDLDKILTEDMFEKVYE-----EMENTDYMSNFNEFLKTIVSENMPKKH 228
+D A V ++ ++TED+ E++ + EM+ D +S + + IV + K+
Sbjct: 609 VDDLAMQVAACPQVEYLVTEDVSEEIVKKEKEIEMQKEDLLSKPEQIREKIVDGRIKKRL 668
Query: 229 LVLALYANSLLNMYGTLMKDITKK 252
LAL + ++KD+ K+
Sbjct: 669 DSLALLEQPYIKDDKVIVKDLVKQ 692
>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
subunit 8, putative / eIF3c, putative similar to
eukaryotic translation initiation factor 3 subunit 8
(eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
Length = 800
Score = 28.3 bits (60), Expect = 8.4
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 97 YLKVDLDNSQLMETSNLDLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQ 156
Y+K + + N+ K + K + R+KLK N Q Q + E
Sbjct: 98 YIKTLVMLEDFLNEDNMKTKEKMSTSNSKALNAMRQKLKKN----NLQYQEDIKRFRESP 153
Query: 157 LDLSNYNKTDENFYVPPIDREAKSVEQVYDLD-KILTEDMFEKVYEEMENTDYMSNFNEF 215
++ + ++ +E D S E ++ LD + +T +M K ++E+ + +
Sbjct: 154 -EIEDDDEYEEEVVEDSADN--VSWEMLFSLDHEEITWNMVNKKFKEIRAARWSKRRSSS 210
Query: 216 LKTIVSENMPKKHLVLALYANS 237
LK E +KH+ L A +
Sbjct: 211 LKLKPGETHAQKHMDLTKIAKT 232
>At2g38720.1 68415.m04755 microtubule associated protein
(MAP65/ASE1) family protein low similarity to myosin
[Schistosoma japonicum] GI:3941320; contains Pfam
profile PF03999: Microtubule associated protein
(MAP65/ASE1 family)
Length = 587
Score = 28.3 bits (60), Expect = 8.4
Identities = 44/215 (20%), Positives = 90/215 (41%), Gaps = 17/215 (7%)
Query: 114 DLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTD-ENFYVP 172
D RK S+ +I E + N TV+ + ++++ +LD + D N
Sbjct: 110 DRRRKELSETLNQIAEITSNIAGNDYTVSSGSEVDESDLTQRKLDELRADLQDLRNEKAV 169
Query: 173 PIDREAKSVEQVYDLDKILTEDM-------------FEKVYEEMENTDYMSNFNEFLKTI 219
+ + + V++L +IL+ D F K + + + D ++ F E +K++
Sbjct: 170 RLQKVNSYISAVHELSEILSFDFSKALNSVHSSLTEFSKTHSKSISNDTLARFTELVKSL 229
Query: 220 VSENMPK--KHLVLALYANSLLNMYGTLMKDITKKTYVACPHSASLNDHILKNFLSISNN 277
+E + K L L N+ T M + + + + S+ +D + K LS+
Sbjct: 230 KAEKHERLLKLQGLGRSMQELWNLMETPMDERRRFDHCSSLLSSLPDDALKKGCLSLDII 289
Query: 278 RKLRTPQMKDKSLCHALVFVLLINKYKFNLEDLCK 312
R+ + SL + + L+ K + LE++C+
Sbjct: 290 REAEDEVRRLNSLKSSKMKELVF-KRQCELEEICR 323
>At1g57780.1 68414.m06556 heavy-metal-associated domain-containing
protein low similarity to myosin-like antigen GI:159877
Onchocerca volvulus; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 264
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 100 VDLDNSQLMETSNLD---LSRKFGSKKHKKIMEQREK 133
VDL+N +++ N D LSRK K H+KI + ++
Sbjct: 166 VDLENKKVVVIGNFDKDELSRKLNKKMHQKIKKAEKE 202
>At1g06950.1 68414.m00738 chloroplast inner envelope protein-related
similar to chloroplast inner envelope protein GI:1495767
from [Pisum sativum]
Length = 1016
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 125 KKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDREAKSVEQV 184
K +EQ ++L+ V Q + V +NI+ ++ +N +T N I + + E
Sbjct: 795 KARVEQLDELQKQVGLPQPQAEKVIKNITTTKM--ANAIETAVNQGRLNIKQIRELKEAN 852
Query: 185 YDLDKILTEDMFEKVYEEMENTDYMSNFNEFLKTIVSENMP 225
LD ++ + EK++++ + + S EF +T V + +P
Sbjct: 853 VSLDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTIP 893
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,055,228
Number of Sequences: 28952
Number of extensions: 331495
Number of successful extensions: 1236
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 37
length of query: 359
length of database: 12,070,560
effective HSP length: 82
effective length of query: 277
effective length of database: 9,696,496
effective search space: 2685929392
effective search space used: 2685929392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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