GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001683-TA|BGIBMGA001683-PA|IPR002453|Beta tubulin,
IPR000217|Tubulin, IPR003008|Tubulin/FtsZ, GTPase,
IPR008280|Tubulin/FtsZ, C-terminal
         (446 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   1.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   6.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   6.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 103 VDSVLDVIRKEAESCDCLQG 122
           +DS++++IR   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 13/70 (18%), Positives = 28/70 (40%)

Query: 234 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARNSFNYRPQTVSELMSQMFNSGNMMTAA 293
           G +  D + L   +  F   H  +   A +  + +  + P+++ +   ++FN    +   
Sbjct: 46  GDMEQDDQNLKCYLKCFMTKHGILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKSIQNE 105

Query: 294 DPRHGRYLTV 303
           DP    Y  V
Sbjct: 106 DPCEKAYQLV 115


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 321 LAIQNKNSSYFVEWIPNNLKVAVCD 345
           LAI   NS +F E+  NN+++ V D
Sbjct: 328 LAIGCWNSEHFFEYGGNNIEIIVKD 352


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,951
Number of Sequences: 429
Number of extensions: 4503
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 446
length of database: 140,377
effective HSP length: 60
effective length of query: 386
effective length of database: 114,637
effective search space: 44249882
effective search space used: 44249882
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)