Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001679-TA|BGIBMGA001679-PA|IPR007917|Protein of unknown
function UPF0224
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    31   0.042
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   0.30 
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    23   6.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   8.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   8.4  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    23   8.4  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    23   8.4  

>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 30.7 bits (66), Expect = 0.042
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 2  ITCPYEKAHIVEHYRMHIHLQKC 24
          I CPY+  H +  +R+  HL++C
Sbjct: 55 IPCPYDHKHTIVRHRLEYHLKRC 77



 Score = 27.9 bits (59), Expect = 0.30
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 33 KVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDD 71
          ++ CP+D  H +    L++H+  C  R +  T  Y   D
Sbjct: 54 QIPCPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKKD 92


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 67  YITDDEYRPTVEVHATPVLPSDENWDDV 94
           YI D+ Y   V  H    +P DEN DD+
Sbjct: 344 YIMDENYGKDVYKHGISNVPDDENEDDL 371


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 1   MITCPY--EKAHIVEHYRMHIHLQK 23
           M  C Y  EK  + + Y+M +HL+K
Sbjct: 101 MEPCTYTDEKFEVFKKYQMQVHLEK 125


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 1   MITCPYEKAHIVEHYRM 17
           MITC  E  H++  +R+
Sbjct: 588 MITCDKENDHVINRFRL 604


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 45  NDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVE 78
           N  E++F     P+     +Q+Y+ D+ Y P V+
Sbjct: 149 NSEEVNFQSYQDPRLLPRTSQMYMPDNNYSPAVK 182


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 63 DTQLYITDDEYRPTVEVHATPVL 85
          DTQ YI    Y+P V+   T  +
Sbjct: 35 DTQFYIKGVAYQPAVDAEETSTI 57


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
          Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 38 FDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVH 80
          F  +H  ND+++  +V+  PK+ +L+    +T +   P    H
Sbjct: 26 FANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVTPRTPGH 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,149
Number of Sequences: 5004
Number of extensions: 21045
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 8
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)