GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001679-TA|BGIBMGA001679-PA|IPR007917|Protein of unknown
function UPF0224
         (97 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   2.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    19   7.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    19   9.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    19   9.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    19   9.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query: 44  VNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATPVLPSD 88
           V DV ++  +++  K+++L   + +    Y   +    +PV P+D
Sbjct: 324 VADVPINVTLSLDEKKYILQEVVRVKKPHYELNMVEVRSPVTPAD 368


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 26  KQHPACNKVQCP 37
           KQ   CN+ +CP
Sbjct: 483 KQRQQCNQNKCP 494


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 15  YRMHIHLQKCRKQHPACNKV 34
           Y  H    KC  Q+  CN V
Sbjct: 145 YEAHGFSYKCGIQYHICNTV 164


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 15  YRMHIHLQKCRKQHPACNKV 34
           Y  H    KC  Q+  CN V
Sbjct: 141 YEAHGFSYKCGIQYHICNTV 160


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
          protein.
          Length = 370

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 57 PKRHMLDTQ 65
          PKR MLD+Q
Sbjct: 9  PKRDMLDSQ 17


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,702
Number of Sequences: 317
Number of extensions: 1182
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 97
length of database: 114,650
effective HSP length: 48
effective length of query: 49
effective length of database: 99,434
effective search space:  4872266
effective search space used:  4872266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)