GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001679-TA|BGIBMGA001679-PA|IPR007917|Protein of unknown
function UPF0224
         (97 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609...    25   9.5  
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    25   9.5  

>07_03_1473 +
           26756338-26757583,26759067-26759472,26760867-26760930,
           26760975-26761055,26763350-26763588,26763689-26763947,
           26764359-26764538,26764937-26765092,26765174-26765350
          Length = 935

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 77  VEVHATPVLPSDENWDDVS 95
           V++H +P+     NWDDVS
Sbjct: 898 VKIHTSPLPGLVRNWDDVS 916


>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 77  VEVHATPVLPSDENWDDVS 95
           VEV   P   S ENWD +S
Sbjct: 628 VEVEQIPKFTSKENWDHIS 646


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,210
Number of Sequences: 37544
Number of extensions: 126686
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 2
length of query: 97
length of database: 14,793,348
effective HSP length: 70
effective length of query: 27
effective length of database: 12,165,268
effective search space: 328462236
effective search space used: 328462236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)