GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001679-TA|BGIBMGA001679-PA|IPR007917|Protein of unknown
function UPF0224
         (97 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-11
SB_2768| Best HMM Match : zf-CCCH (HMM E-Value=0.004)                  29   0.44 
SB_4100| Best HMM Match : DUF1623 (HMM E-Value=3.7)                    29   0.58 
SB_31519| Best HMM Match : DUF1458 (HMM E-Value=2.9)                   28   1.3  
SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)                   28   1.3  
SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   1.8  
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_11071| Best HMM Match : zf-MYM (HMM E-Value=5.2)                    27   3.1  
SB_39757| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_34350| Best HMM Match : Peptidase_M22 (HMM E-Value=1.9)             26   4.1  
SB_32485| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_26731| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_31734| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_4569| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.2  
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  
SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)                25   9.5  

>SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 1   MITCPYEKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDATHVVNDVELDFHVTVCPKRH 60
           M  CPY+  H +   R   HL KCR+ + +   V+CPF+A H +   ELDFHV  CP ++
Sbjct: 16  MFVCPYDPVHRISAKRFTYHLMKCRRNNSSMEFVRCPFNARHEMPKEELDFHVARCPDKN 75

Query: 61  MLDTQLYITDDEYRPTV-EVHATPVLPSDEN 90
           ++     I  +   P V +    PV P   N
Sbjct: 76  VIRQD--IERETAEPQVFQTSNRPVTPPPTN 104


>SB_2768| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
          Length = 389

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 14  HYRMHIHLQKCRKQHPACNKVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEY 73
           H  + + + + RK+ P   ++  P +   ++ ++E   HV   P R +   ++   DD +
Sbjct: 25  HKEITVFVPQWRKEAP---RIDTPMEDQDILLELERQRHVVFTPSRRVNGRRIVCYDDRF 81

Query: 74  RPTVEVHATPVLPSDENWDDV 94
              +      ++ S++N+ D+
Sbjct: 82  ILRLASETDGIIVSNDNFRDL 102


>SB_4100| Best HMM Match : DUF1623 (HMM E-Value=3.7)
          Length = 183

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 15  YRMHI--HLQKCRKQHPACNKVQCPFDATHVVNDVELDFH---VTVCPKRHMLDTQLYIT 69
           + MH+  +++  R       K    +    + N+V++D H   V  CP + +  T L I 
Sbjct: 42  HSMHVDGYMKLYRFASAGTRKADSYYGEAFIANNVKVDAHLQNVYQCPTKKVYTTNLNIG 101

Query: 70  DDEYR 74
           DD Y+
Sbjct: 102 DDHYK 106


>SB_31519| Best HMM Match : DUF1458 (HMM E-Value=2.9)
          Length = 168

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 38  FDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATPVLPSDENWDDVSTD 97
           F    V++ +   FH     K   +  +LY +    + TV+V   PV    E+ DD+  D
Sbjct: 94  FTEAQVIHGIS-SFHCIEPDKDGFVKCRLYSSQSAEQATVDVFLFPVSDDSEDSDDIEDD 152


>SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)
          Length = 302

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 38  FDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATPVLPSDENWDDVSTD 97
           F    V++ +   FH     K   +  +LY +    + TV+V   PV    E+ DD+  D
Sbjct: 228 FTEAQVIHGIS-SFHCIEPDKDGFVKCRLYSSQSAEQATVDVFLFPVSDDSEDSDDIEDD 286


>SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 8/42 (19%)

Query: 26 KQHPA--CNK-VQCPFD-----ATHVVNDVELDFHVTVCPKR 59
          K H A  C + V+CPF      A+H V  +++  H+ VCP R
Sbjct: 20 KDHKAICCGRMVECPFPPPGSKASHKVKLIDVSRHIKVCPLR 61


>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 4   CPY-EKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDATHVVNDVELDFHVTVCP 57
           CPY  K++   + ++HIH+    +++  C++    F   H +N    + H  V P
Sbjct: 87  CPYCGKSYQKNYLKVHIHVVHHGEKYFKCDECGKSFGYLHTLNSHMENMHQRVRP 141


>SB_11071| Best HMM Match : zf-MYM (HMM E-Value=5.2)
          Length = 529

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 6   YEKAHIVEHYRMHIHLQKCRKQHPACNKVQC 36
           Y+   IV  Y++H+    C +  P C  + C
Sbjct: 389 YKFLSIVSRYQVHVQHDFCSRNAPPCKDMTC 419


>SB_39757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 56 CPKRHMLDTQLYITDDEYRPTVEVHATPVLPSDENWDD 93
          C  + M  T     D  YR   ++ +TP LP D  + D
Sbjct: 33 CDHQDMKSTPFLQCDARYRDHQDMKSTPFLPCDARYRD 70


>SB_34350| Best HMM Match : Peptidase_M22 (HMM E-Value=1.9)
          Length = 180

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 56  CPKRHMLDTQLYITDDEYRPTVEVHATPVLPSDENWDD 93
           C  + M  T     D  YR   ++ +TP LP D  + D
Sbjct: 103 CDHQDMKSTPFLQCDARYRDHQDMKSTPFLPCDARYRD 140


>SB_32485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 31  CNKVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHAT 82
           C +   P DAT+      L  H T    ++ML   ++ T   Y+  + VHAT
Sbjct: 88  CYQYMLPLDATNTCYQYMLPVHATSTCYQYML--PVHATSTCYQYMLPVHAT 137


>SB_26731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 52 HVTVCPKRH------MLDTQ-LYITDDEYRPTVEVHATPVLPS 87
          H+ +CP  H       LD Q L   DD+  P+++ H TP +PS
Sbjct: 48 HILLCPVSHHISVVPSLDYQALPSLDDQALPSLDDHHTPDVPS 90


>SB_31734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 42  HVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATP 83
           H++N    D  + +      L T++    DE +P ++ + TP
Sbjct: 285 HIINYYSRDIEIYLLSMGRKLKTRVPCHPDELKPQLQTYTTP 326


>SB_4569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 12 VEHYRMHIHLQKCRKQHPACNKVQCPFDATH---VVNDVELDFHVTVCP 57
          +E +  H+  ++C ++   C  V CP    H     + +E  F V  CP
Sbjct: 48 LERHADHL-ARECNERLVRCENVSCPMQIAHRELAGHILECQFQVVRCP 95


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 47   VELDFHVTVCPKRHMLDTQLYITDDEYRPTVE-VHATP 83
            V++D H T   + H  +T LY TDD +   V+ V  TP
Sbjct: 1124 VDVDKHYT---EAHQYETDLYGTDDVFEEDVDLVPPTP 1158


>SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 1   MITCPY-EKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDAT 41
           ++ CPY  KA + + Y +  HL +    HP  N    P   T
Sbjct: 110 LLKCPYCAKAFVSQEYLL-AHLSRRHDDHPIANGSVKPMTVT 150


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 1   MITCPYEKAHIVEHYRMHIHLQK 23
           +++CP EK+   + +R   HLQK
Sbjct: 436 IVSCPIEKSKKTKDHRAQRHLQK 458


>SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)
          Length = 369

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 1   MITCPY-EKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDAT 41
           ++ CPY  KA + + Y +  HL +    HP  N    P   T
Sbjct: 110 LLKCPYCAKAFVSQEYLL-AHLSRRHDDHPIANGSVKPMTVT 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,125,442
Number of Sequences: 59808
Number of extensions: 177790
Number of successful extensions: 308
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 24
length of query: 97
length of database: 16,821,457
effective HSP length: 71
effective length of query: 26
effective length of database: 12,575,089
effective search space: 326952314
effective search space used: 326952314
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)