GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001679-TA|BGIBMGA001679-PA|IPR007917|Protein of unknown
function UPF0224
         (97 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical ...    44   1e-05
AF099926-3|AAK73893.1|  169|Caenorhabditis elegans Hypothetical ...    44   1e-05
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    29   0.39 
AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical ...    28   1.2  
AC006768-1|AAF60576.2|  433|Caenorhabditis elegans Hypothetical ...    28   1.2  
Z83731-2|CAB06022.2|  208|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AL032632-9|CAA21592.2|  420|Caenorhabditis elegans Hypothetical ...    25   6.3  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    25   8.3  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    25   8.3  
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    25   8.3  
AC017117-11|AAF16621.1|  303|Caenorhabditis elegans Hypothetical...    25   8.3  

>CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical
           protein T06A10.3 protein.
          Length = 169

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 2   ITCPYEKAHIVEHYRMHIHLQKCRKQ----HPACNKV-QCPFDATHVVNDVELDFHVTVC 56
           ITCPY   H V     + HL KCR +    +P   K+ +C ++  H + + EL FH   C
Sbjct: 19  ITCPYNSDHKVSMEEFNTHLWKCRTEKLHFYPHSLKLKRCSYNMRHFLPEEELQFHEIFC 78

Query: 57  PKRHMLDTQLYITDDEYRPTVEVH-ATPVLPSDENWDDVSTD 97
            KR   D +  ++ +     V  H A   L  +   D+ S D
Sbjct: 79  -KRQSADLRRQLSLEPLELNVAEHLAAQKLRKEYEKDEESLD 119


>AF099926-3|AAK73893.1|  169|Caenorhabditis elegans Hypothetical
           protein T06A10.3 protein.
          Length = 169

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 2   ITCPYEKAHIVEHYRMHIHLQKCRKQ----HPACNKV-QCPFDATHVVNDVELDFHVTVC 56
           ITCPY   H V     + HL KCR +    +P   K+ +C ++  H + + EL FH   C
Sbjct: 19  ITCPYNSDHKVSMEEFNTHLWKCRTEKLHFYPHSLKLKRCSYNMRHFLPEEELQFHEIFC 78

Query: 57  PKRHMLDTQLYITDDEYRPTVEVH-ATPVLPSDENWDDVSTD 97
            KR   D +  ++ +     V  H A   L  +   D+ S D
Sbjct: 79  -KRQSADLRRQLSLEPLELNVAEHLAAQKLRKEYEKDEESLD 119


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 22  QKCRKQHPACNKVQCPFDAT-HVVND 46
           QKC ++H  C+KV CP   T   VND
Sbjct: 499 QKCDQKHDKCSKVSCPSGQTCSQVND 524


>AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical
           protein Y49A3A.3 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 32  NKVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATPVLPSDENW 91
           +++ CP D  H +   +L+ H+T C  R + D + YI  D      E   T  +      
Sbjct: 50  DRMVCPNDGKHTILKADLEIHLTRCNSR-IRDAE-YIKIDANSIRGETKRTDKIDRRATE 107

Query: 92  DDVST 96
           D++ T
Sbjct: 108 DEICT 112


>AC006768-1|AAF60576.2|  433|Caenorhabditis elegans Hypothetical
           protein Y45G12B.3 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 58  KRHMLDTQLYITDDEYRPTVEVHATPVLPSD 88
           KRH++ T +Y   D   P + VH TP +  D
Sbjct: 262 KRHLVKTNIYPVPDPRFPFLGVHFTPRMNGD 292


>Z83731-2|CAB06022.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.3 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 29  PACNKVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLY 67
           PA NK  C  +   +V+ +  DF VT   ++  LD Q Y
Sbjct: 107 PADNKTSCSSEHETLVSCINCDFLVTKVTEKCALDGQKY 145


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 71  DEYRPTVEVHATPVLPSDEN 90
           D+ RPT E+ ATP+L S  N
Sbjct: 726 DQVRPTEELWATPILSSTSN 745


>AL032632-9|CAA21592.2|  420|Caenorhabditis elegans Hypothetical
           protein Y11D7A.13 protein.
          Length = 420

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 23  KCRKQHPACNKVQCPFDATHVVNDVELDFH 52
           +C +++    ++  PFDA  V++ V++  H
Sbjct: 166 RCERKNTCPARIHTPFDAERVIHKVQVHNH 195


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 1   MITCPYEKAHIVEHYRMHIHLQK 23
           ++ C     HI E YR+ +H QK
Sbjct: 340 LLACELHNVHIHEDYRLILHEQK 362


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 1   MITCPYEKAHIVEHYRMHIHLQK 23
           ++ C     HI E YR+ +H QK
Sbjct: 342 LLACELHNVHIHEDYRLILHEQK 364


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 40   ATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATP 83
            AT+   D +++F  T      M   QL +T  +  PTV V  TP
Sbjct: 1261 ATYGAEDGKINFFQTSQSFLGMGQAQLKLTKSQPAPTVSVPTTP 1304


>AC017117-11|AAF16621.1|  303|Caenorhabditis elegans Hypothetical
           protein F43C11.11 protein.
          Length = 303

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 3   TCPYEKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDATHVVNDVEL----DFHVTVCPK 58
           T PYE+  + E     + ++   +    C    CP    ++ + VE+       V  CP 
Sbjct: 154 TLPYEETDVPEEMMTTLAMETSTETEKVCKGSMCPDWTPYLEDTVEIIEQDGCSVPSCPA 213

Query: 59  RHMLDTQLYITDDEYRP 75
             +     +  D E  P
Sbjct: 214 NKLPRILAFYEDSEILP 230


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,909
Number of Sequences: 27539
Number of extensions: 122641
Number of successful extensions: 278
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 13
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)