GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001679-TA|BGIBMGA001679-PA|IPR007917|Protein of unknown
function UPF0224
         (97 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04160.1 68416.m00440 expressed protein ; expression supporte...    29   0.48 
At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206...    28   0.84 
At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family...    27   2.6  
At5g38570.1 68418.m04664 F-box family protein contains F-box dom...    26   3.4  
At5g45720.1 68418.m05621 hypothetical protein                          26   4.5  
At1g53770.1 68414.m06119 expressed protein                             25   6.0  
At1g17100.1 68414.m02083 SOUL heme-binding family protein simila...    25   6.0  
At3g48770.1 68416.m05326 hypothetical protein                          25   7.9  

>At3g04160.1 68416.m00440 expressed protein ; expression supported
           by MPSS
          Length = 712

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 20  HLQKCRKQHPACNKVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEV 79
           H    +K    C  V+CPFD+ H +    L  H   CP    L   L  +   YR T+E+
Sbjct: 86  HSSLLQKDENGCF-VRCPFDSNHFMPPEALFLHSLRCPNTLDL-IHLLESFSSYRNTLEL 143


>At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206:
          Protein of unknown function (DUF715)
          Length = 453

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 34 VQCPFDATHVVNDVELDFHVTVCP 57
          + CP D +H V    L++HV  CP
Sbjct: 43 IPCPIDPSHSVLQENLEWHVKRCP 66


>At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family
          protein contains Pfam profile: PF00149 calcineurin-like
          phosphoesterase
          Length = 475

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 46 DVELDFHVTVCPKRHMLDTQLYITDDEY 73
          D+ LD HV   PK +    Q++IT  +Y
Sbjct: 37 DIPLDHHVFKVPKGYNAPQQVHITQGDY 64


>At5g38570.1 68418.m04664 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 5   PYEKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDATHVVNDVELDFHVTVCPKRHMLDT 64
           P  +A ++E  R+ IH+       P   K       +H V ++++D+H +       L+ 
Sbjct: 65  PIHRAPVIE--RLCIHINSNPHIKPEYIKRWIEIAVSHYVRELQIDYH-SKTKITLQLEA 121

Query: 65  QLYITDDEYRPTVEVHATPVL 85
           + Y  D +Y   + +   PVL
Sbjct: 122 ESYFIDGKYLQQL-ISGCPVL 141


>At5g45720.1 68418.m05621 hypothetical protein
          Length = 900

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 11 IVEHYRMHIHLQKC--RKQHPACNKVQCP 37
          I EH R HIHL  C   K H   N  Q P
Sbjct: 17 IGEHLRNHIHLTNCIHLKNHMHNNNKQSP 45


>At1g53770.1 68414.m06119 expressed protein
          Length = 563

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 8   KAHIVEHYRMHIHLQKCRKQHPAC 31
           K +I  H+R H  L+ C  ++P+C
Sbjct: 406 KNYIALHFRRHGFLKFCNAKNPSC 429


>At1g17100.1 68414.m02083 SOUL heme-binding family protein similar
          to SOUL protein [Mus musculus] GI:4886906; contains
          Pfam profile PF04832: SOUL heme-binding protein
          Length = 232

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 29 PACNKVQCP-FDATHVVNDVEL 49
          P+CN+++CP ++  H  N  E+
Sbjct: 40 PSCNRIECPSYELVHSGNGYEI 61


>At3g48770.1 68416.m05326 hypothetical protein
          Length = 1899

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 67   YITDDEYRPTVEVHATPV-LPSDENWDDVST 96
            ++++ E++P     +  + +PSDE W D+S+
Sbjct: 1520 FLSEAEWKPEKGASSGRIWIPSDEKWADISS 1550


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,603
Number of Sequences: 28952
Number of extensions: 101355
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 10
length of query: 97
length of database: 12,070,560
effective HSP length: 70
effective length of query: 27
effective length of database: 10,043,920
effective search space: 271185840
effective search space used: 271185840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)