Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001678-TA|BGIBMGA001678-PA|IPR005806|Rieske [2Fe-2S]
region
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    38   0.003
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   3.9  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   5.2  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    26   6.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   6.9  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   9.1  

>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 62  CPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVET-DG 120
           C H GA LA G       I CP+H   FNAA   V     +  P   ++RT+ V E  DG
Sbjct: 61  CSHYGAPLAKGVVTSDGHIVCPWHGACFNAATGDV-----EDTPAIAALRTFPVTEEGDG 115

Query: 121 AIWI 124
           ++WI
Sbjct: 116 SLWI 119


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 10/46 (21%)

Query: 225 KYDLARIDVKVTQIGPGH------VRLFLKTSVGPFYIAQSVTPLG 264
           KYDL  + V    +GPGH        LFL+ S+GPFY     T  G
Sbjct: 118 KYDLNMLFV----VGPGHGAPAILSALFLEDSLGPFYPRYQFTKEG 159


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 36  YSFGCHGQNLCVYRGE 51
           +SFG H QN+C+Y  E
Sbjct: 101 FSFGAHCQNMCLYGDE 116


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 129 EGREPLWEITDPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLN 174
           EG +  +E+ DP E  D G  G+     + H+ +IP  G  +P ++
Sbjct: 145 EGAKQRFEVQDP-EPDDDGNAGQIYKTTANHLIQIPAKGTPLPPIS 189


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 214 LMHITQEYKVLKYDLARIDVKVTQIGPGHVRLFLKTSV 251
           +++ITQ+ K     L    V++T++GP H+R+  K ++
Sbjct: 279 VVNITQKPKTKYKPLPLSTVELTKLGPKHLRISAKKTL 316


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 146 FGYRGRNEFEVSAHIQEIPENGADVPHLNAVH--SSSLLSDLGERYPVLHEIIGRHVWNA 203
           FG+R  N F  S H  ++  N   +P+ + +   S++L +  G RY  L +        A
Sbjct: 436 FGFRLLNPFIASQHFDQMIHNNLRLPYDSCMGYISNALNAIYGFRYVALQDSYPNPGPLA 495

Query: 204 DWTKSDDH 211
           D+ + D +
Sbjct: 496 DYFEQDQY 503


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,233
Number of Sequences: 5004
Number of extensions: 76351
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 6
length of query: 348
length of database: 2,362,478
effective HSP length: 73
effective length of query: 275
effective length of database: 1,997,186
effective search space: 549226150
effective search space used: 549226150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)