GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001678-TA|BGIBMGA001678-PA|IPR005806|Rieske [2Fe-2S]
region
         (348 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   4.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.7  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   5.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.6  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 262 PLGPLLQKVIHRVYSPAYNAPVGAFLVRC 290
           P  P     + R  SP  +AP G  +VRC
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIVRC 107


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 58  VDAYCPHLGANLAVGGTVRGSCIECPFHKWRFN 90
           + AY P   A++     V+    + P HKW+ N
Sbjct: 200 IGAYGPEKSASIPKKKEVKEEIEDEPDHKWKKN 232


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 301 IWNSKRFVSAPAYVKTDKTIRTFRNWFGQFYSEHSLSFRDALQNPL 346
           +W         A++K  K IR  + W    Y    L FR  + + L
Sbjct: 98  VWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLGFRYLVNDEL 143


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 301 IWNSKRFVSAPAYVKTDKTIRTFRNWFGQFYSEHSLSFRDALQNPL 346
           +W         A++K  K IR  + W    Y    L FR  + + L
Sbjct: 412 VWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLGFRYLVNDEL 457


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 94  TCVSLPGSDIAPKGVS 109
           +CVS+P  + +P+G S
Sbjct: 33  SCVSMPSMNCSPQGAS 48


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 301 IWNSKRFVSAPAYVKTDKTIRTFRNWFGQFYSEHSLSFR 339
           +W         A++K  K IR  + W    Y    L FR
Sbjct: 645 VWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLGFR 683


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 301 IWNSKRFVSAPAYVKTDKTIRTFRNWFGQFYSEHSLSFR 339
           +W         A++K  K IR  + W    Y    L FR
Sbjct: 645 VWTLPGKTKMIAHLKDKKKIRAKKRWSQCMYMYFLLGFR 683


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,216
Number of Sequences: 317
Number of extensions: 4075
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 348
length of database: 114,650
effective HSP length: 57
effective length of query: 291
effective length of database: 96,581
effective search space: 28105071
effective search space used: 28105071
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)