Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001678-TA|BGIBMGA001678-PA|IPR005806|Rieske [2Fe-2S]
region
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 75 1e-13
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 74 1e-13
02_05_1039 + 33707196-33708815 63 3e-10
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256... 51 1e-06
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475... 44 2e-04
03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262... 41 0.001
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 38 0.009
03_06_0373 + 33468711-33468917,33469020-33469217 38 0.016
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331... 37 0.021
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 30 2.4
09_04_0644 + 19181335-19184424 29 7.3
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 29 7.3
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 74.5 bits (175), Expect = 1e-13
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 13/174 (7%)
Query: 7 PPYPNGWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLG 66
P N W+ V + +LK +++ ID C + ++RG+DG CV C H
Sbjct: 229 PNLKNFWYPVVFSGDLKDDTMVPID--------CFEEQWVIFRGKDGRPGCVQNTCAHRA 280
Query: 67 ANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDGAIWIWH 126
L +G G I+CPFH W ++ G C +P + + V IR+ E +G +WIW
Sbjct: 281 CPLHLGSVSEGR-IQCPFHGWEYSTDGKCEKMPATKLL--NVRIRSLPCFEQEGMVWIWP 337
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAVHSSS 180
E PP F E+ + +N D+ H H+S+
Sbjct: 338 GDGTPESTIPSLQPP--SGFTIHAEMVMELPVEHGLLLDNLLDIAHAPFAHTST 389
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 7 PPYPNGWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLG 66
P N W+ VA + +LK +++ ID C + ++RG+DG CV C H
Sbjct: 229 PSLKNFWYPVAFSSDLKDDTMVPID--------CFEEQWVIFRGKDGRPGCVMNTCAHRA 280
Query: 67 ANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDGAIWIWH 126
L +G G I+CP+H W ++ G C +P + + V IR+ E +G +WIW
Sbjct: 281 CPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMPSTKML--NVRIRSLPCFEQEGMVWIW- 336
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQE--IPENGADVPHLNAVHSSS 180
G +P + T P L G+ E + ++ + +N D+ H H+S+
Sbjct: 337 --PGNDPP-KSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTST 389
>02_05_1039 + 33707196-33708815
Length = 539
Score = 63.3 bits (147), Expect = 3e-10
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 43 QNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLP--- 99
+ L +YR G+ RC + CPH A L+ G V G +EC +H W+F+ G CV +P
Sbjct: 111 RQLVLYRDAAGVLRCHEDRCPHRLAKLSEGQLVDGK-LECLYHGWQFDGEGKCVKIPQLP 169
Query: 100 -GSDIAPKGVSIRTWCVVETDGAIWIW 125
G+ I P+ R++ V ++ G +W W
Sbjct: 170 DGAKI-PRNACARSYEVRDSQGVVWAW 195
>03_01_0329 +
2558726-2559112,2559214-2559449,2559537-2559663,
2560190-2560326,2560467-2560626,2560828-2561106,
2561750-2561920,2562636-2562717,2563397-2563623,
2563682-2563727,2564199-2564281,2564376-2564492,
2564965-2565036
Length = 707
Score = 51.2 bits (117), Expect = 1e-06
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 58 VDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLP-GSDIAPKGVSIRT--WC 114
+D CPH A L+ G C++C +H W F+ +G C +P + P+ ++R+ C
Sbjct: 117 LDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKAC 176
Query: 115 VVE-----TDGAIWIWHDAEGREPLWEITDPPEL-KDFGYRGRNEFEVSAHI----QEIP 164
++ + G +++W D G E T PP L K+F + + + +
Sbjct: 177 AIKFPTLVSQGLLFVWPDENGWEKA-TATKPPMLPKEFEDPAFSTVTIQRDLYYGYDTLM 235
Query: 165 ENGADVPHLNAVH 177
EN +D H+ H
Sbjct: 236 ENVSDPSHIEFAH 248
>03_06_0372 +
33446153-33446665,33446744-33446993,33447347-33447501,
33447593-33447805,33447926-33448113,33448282-33448540
Length = 525
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 48 YRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLP 99
+ G G R VD CPH A L+ G C++C +H W F+ G+C +P
Sbjct: 112 FDGGGGEWRVVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIP 163
>03_06_0369 +
33425251-33425778,33425864-33426051,33426152-33426251,
33426366-33426578,33426616-33426822,33426908-33427095,
33427234-33427492
Length = 560
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/87 (27%), Positives = 34/87 (39%)
Query: 13 WFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLGANLAVG 72
W+ VA +L G+ LG + G G R D CPH A L+ G
Sbjct: 82 WYPVAPVCDLDPGAPHGKTVLGLRIVAWFDRTTAAADGGGGEWRVFDDSCPHRLAPLSEG 141
Query: 73 GTVRGSCIECPFHKWRFNAAGTCVSLP 99
++C +H W F+ G C +P
Sbjct: 142 RVDDKGRLQCVYHGWCFDGRGACQFIP 168
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 313 YVKT--DKTIRTFRNWFGQFYSEHSLSFRDALQNPL 346
YV T D I TFRNWF + Y +H + + + N L
Sbjct: 429 YVPTSSDNMIITFRNWFRK-YCKHQIGWATPITNQL 463
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 38.3 bits (85), Expect = 0.009
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 50 GEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLP 99
G G R VD CPH A L+ G ++C +H W F+ G+C +P
Sbjct: 122 GGGGEWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIP 171
>03_06_0373 + 33468711-33468917,33469020-33469217
Length = 134
Score = 37.5 bits (83), Expect = 0.016
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 42 GQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLP 99
G ++ + G R VD CPH A L+ G ++C +H W F+ G+C +P
Sbjct: 4 GLSVVAWLDGGGEWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIP 61
>03_06_0370 +
33431696-33432217,33432521-33432796,33433003-33433183,
33433253-33433455,33433545-33433732,33433844-33434105
Length = 543
Score = 37.1 bits (82), Expect = 0.021
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 56 RCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLP 99
R VD CPH A L+ G ++C +H W F+ G+C +P
Sbjct: 123 RVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIP 166
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 158 AHIQEIPENGADVPHLNAVHSSSLLSDLGERYP 190
AH +PE +P A HS+S+ SD+G YP
Sbjct: 655 AHSSLLPEIHKSIPPSAAGHSNSVNSDVGSSYP 687
>09_04_0644 + 19181335-19184424
Length = 1029
Score = 28.7 bits (61), Expect = 7.3
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 228 LARIDVKVTQIGPGHVRLFLKTSVGPFYIA------QSVTPLGPLLQKVIHRVYSPAYNA 281
LA+ D+K +G R F+ T + PFY A + + +G +++ + + +YSP
Sbjct: 195 LAKEDLKAFGLGCDWRRSFITTDMNPFYDAFVRWQMRKLKKMGKVVKDMRYTIYSPLDGQ 254
Query: 282 P 282
P
Sbjct: 255 P 255
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.7 bits (61), Expect = 7.3
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 232 DVKVTQIGPGHVRLFLKTSVGPFYIAQSVTPLGPLLQKVIHRVYSPAYNAPVGAFL 287
D+KV +I G RL + +G FYI +VT GP +Q ++ + P +N + +F+
Sbjct: 270 DLKVKEIKNG--RLAMVAWLG-FYIQAAVTGKGP-IQNLVEHLSDPLHNNILSSFV 321
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.139 0.456
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,308
Number of Sequences: 37544
Number of extensions: 544321
Number of successful extensions: 841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 17
length of query: 348
length of database: 14,793,348
effective HSP length: 83
effective length of query: 265
effective length of database: 11,677,196
effective search space: 3094456940
effective search space used: 3094456940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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