GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001678-TA|BGIBMGA001678-PA|IPR005806|Rieske [2Fe-2S]
region
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   1e-25
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   3e-05
SB_44043| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20)                37   0.021
SB_24544| Best HMM Match : PSCyt1 (HMM E-Value=4.3)                    31   1.8  
SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_7857| Best HMM Match : GETHR (HMM E-Value=1.5)                      29   5.6  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.4  
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)                      28   9.8  
SB_16101| Best HMM Match : RVT_1 (HMM E-Value=0.00031)                 28   9.8  

>SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score =  114 bits (274), Expect = 1e-25
 Identities = 52/102 (50%), Positives = 67/102 (65%), Gaps = 9/102 (8%)

Query: 6   PPPYPNGWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHL 65
           PP +PNGWF V  +++LKVG+V  +         C G+NL V+RGEDG+   VDAYCPHL
Sbjct: 116 PPVFPNGWFEVMGSQDLKVGNVKHVS--------CLGENLAVFRGEDGVVCIVDAYCPHL 167

Query: 66  GANLAVGGTVRGSCIECPFHKWRFNA-AGTCVSLPGSDIAPK 106
           GANL VGG V G+C++CPFH W+F    G C  +P S   P+
Sbjct: 168 GANLGVGGQVVGNCLQCPFHGWKFRGDDGKCSEIPYSKNIPE 209


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 41  HGQNLCVYRGEDGLARCVDAYCPHLGANLAVG-----GTVRGSCIECPFHKWRFN 90
           +G+ + +++   G    +D +CPH+G  L +G     G  R  CI CP+HKW+FN
Sbjct: 417 NGKRIALFKHR-GQVYAMDEHCPHMGGPLHLGDIEELGEARRLCIVCPWHKWKFN 470


>SB_44043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 238 IGPGHVRLFLKTSVGPFYIAQSVTPLGPLLQKVIHRVY 275
           +GPG V L+ K+S G   + Q++TP  PLLQK+ HR++
Sbjct: 1   VGPGLVNLYFKSSFGDGVMIQTLTPQEPLLQKMTHRIF 38


>SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20)
          Length = 216

 Score = 37.1 bits (82), Expect = 0.021
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 51  EDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNA-AGTCVSLPGSDIAP 105
           E+G    V   C H GA LA G   RG  + CP+H   FN   G     PG D  P
Sbjct: 144 ENGTFYAVGHKCTHYGAPLASGALCRGR-VRCPWHGACFNVKTGDIEDFPGLDSIP 198


>SB_24544| Best HMM Match : PSCyt1 (HMM E-Value=4.3)
          Length = 164

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 31 DALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSC 79
          D LG++  G    +L V  G+DG AR +D+     GA+L VG  +  +C
Sbjct: 32 DGLGRFDCGLDSLDLAVRAGDDGDARILDSL---FGADL-VGDPLESTC 76


>SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 42  GQNLCVYRGEDGLARCV--DAYCPHLGANLAVGGTVRGSCIECPF 84
           G+N  V   + GL+R +  D YC H GA   +  T   +C++  F
Sbjct: 381 GENNTVKVADFGLSRLIEDDIYCAHEGAKFPIKWTAPEACLQGQF 425


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 61   YCPHLGANLAVGGTVRGSCIECPF 84
            +CPH   N+A GGT  G C   PF
Sbjct: 1046 FCPH--CNVAHGGTAGGDCCHFPF 1067


>SB_7857| Best HMM Match : GETHR (HMM E-Value=1.5)
          Length = 205

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 136 EITDPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAVHSSSLLSDLGER 188
           ++ D  + K F   G+N  E    I  IP+    V ++ A+HSS  L  L ER
Sbjct: 98  DVLDKLDFKQFSVSGKNMLETVQFISIIPQ----VEYITALHSSG-LGSLAER 145


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 122 IWIWHDAEGREPLW 135
           I IWHD EGR P W
Sbjct: 411 IRIWHDNEGRNPAW 424


>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
          Length = 739

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 13/133 (9%)

Query: 137 ITDPPELKDFGYRGRNEFE-----VSAHIQEIPENG-ADVPHLNAVHSSSLLSDL-GERY 189
           I   P+++  GY GR             I  + ENG  +  HL     S   +DL GE  
Sbjct: 261 IATHPDVQGMGY-GRKALSSLVQYYEGKIPNLSENGQTETSHLGIPTESE--NDLTGEHS 317

Query: 190 PVLHEIIGR--HVWNADWTKSDDHTSLMHITQEYKVLKYDLARIDVKVTQIGPGHVRLFL 247
            ++  I+G      + DW K+     L     ++ +  YD+ R+D+    +   H+ + L
Sbjct: 318 CIMLRILGEIDAEQSDDWLKAYT-VVLSRAELDFTLTNYDMKRLDMYSRNMVDHHLIMDL 376

Query: 248 KTSVGPFYIAQSV 260
             +V  FY  + +
Sbjct: 377 VPAVARFYFLRKL 389


>SB_16101| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
          Length = 336

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 19/62 (30%), Positives = 23/62 (37%)

Query: 50  GEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVS 109
           GE  L RCV   C      L    T      +C   KW  N A     +PG  +  K V 
Sbjct: 66  GEKRLHRCVSRICDTGYIPLPRSLTRYARSFDCGERKWLTNGAEISWKMPGRYLTGKFVI 125

Query: 110 IR 111
           +R
Sbjct: 126 VR 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.139    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,130,419
Number of Sequences: 59808
Number of extensions: 601570
Number of successful extensions: 908
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 11
length of query: 348
length of database: 16,821,457
effective HSP length: 83
effective length of query: 265
effective length of database: 11,857,393
effective search space: 3142209145
effective search space used: 3142209145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)