GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001678-TA|BGIBMGA001678-PA|IPR005806|Rieske [2Fe-2S]
region
         (348 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456342-1|CAG30228.1|  605|Homo sapiens Em:AC002472.7 protein.        33   1.1  
BC032485-1|AAH32485.1|  598|Homo sapiens apoptosis-inducing fact...    33   1.1  
AK094844-1|BAC04434.1|  604|Homo sapiens protein ( Homo sapiens ...    33   1.1  
AK055035-1|BAB70841.1|  605|Homo sapiens protein ( Homo sapiens ...    33   1.1  

>CR456342-1|CAG30228.1|  605|Homo sapiens Em:AC002472.7 protein.
          Length = 605

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 62  CPHLGANLAVGGTVRGSCIECPFHKWRFN-AAGTCVSLPGSD 102
           CPH GA L  G   RG  + CP+H   FN + G     PG D
Sbjct: 109 CPHYGAPLVKGVLSRGR-VRCPWHGACFNISTGDLEDFPGLD 149


>BC032485-1|AAH32485.1|  598|Homo sapiens apoptosis-inducing factor,
           mitochondrion-associated, 3 protein.
          Length = 598

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 62  CPHLGANLAVGGTVRGSCIECPFHKWRFN-AAGTCVSLPGSD 102
           CPH GA L  G   RG  + CP+H   FN + G     PG D
Sbjct: 109 CPHYGAPLVKGVLSRGR-VRCPWHGACFNISTGDLEDFPGLD 149


>AK094844-1|BAC04434.1|  604|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37525 fis, clone BRCAN2009156, moderately
           similar to Xenopus laevis mRNA for Nfrl. ).
          Length = 604

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 62  CPHLGANLAVGGTVRGSCIECPFHKWRFN-AAGTCVSLPGSD 102
           CPH GA L  G   RG  + CP+H   FN + G     PG D
Sbjct: 115 CPHYGAPLVKGVLSRGR-VRCPWHGACFNISTGDLEDFPGLD 155


>AK055035-1|BAB70841.1|  605|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30473 fis, clone BRAWH1000094, moderately
           similar to Xenopus laevis mRNA for Nfrl. ).
          Length = 605

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 62  CPHLGANLAVGGTVRGSCIECPFHKWRFN-AAGTCVSLPGSD 102
           CPH GA L  G   RG  + CP+H   FN + G     PG D
Sbjct: 109 CPHYGAPLVKGVLSRGR-VRCPWHGACFNISTGDLEDFPGLD 149


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.139    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,050,744
Number of Sequences: 224733
Number of extensions: 2618769
Number of successful extensions: 3829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3829
Number of HSP's gapped (non-prelim): 4
length of query: 348
length of database: 73,234,838
effective HSP length: 91
effective length of query: 257
effective length of database: 52,784,135
effective search space: 13565522695
effective search space used: 13565522695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)