GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001678-TA|BGIBMGA001678-PA|IPR005806|Rieske [2Fe-2S]
region
         (348 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...   237   1e-62
Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical pr...    33   0.30 
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol dehydro...    30   2.8  
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    30   2.8  
AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical ...    30   2.8  
AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical ...    30   2.8  
Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    29   3.7  
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z75548-5|CAD31696.1|  322|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical ...    29   6.5  
Z81495-4|CAB04058.1|  171|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF303268-1|AAG50226.1|  171|Caenorhabditis elegans 2O123 protein.      28   8.5  

>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score =  237 bits (579), Expect = 1e-62
 Identities = 132/353 (37%), Positives = 193/353 (54%), Gaps = 38/353 (10%)

Query: 5   LPPPYPNGWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPH 64
           +PP +PNGW+ V E+ +L    ++ I  LG++        L + R E G     D+YCPH
Sbjct: 73  MPPVFPNGWYCVCESEKLANNQIMEITVLGQF--------LSLIRSESGAVYITDSYCPH 124

Query: 65  LGANLAVGG-TVRGSCIECPFHKWRFNA-AGTCVSLPGSD-IAPKGVSIRTWCVVETDGA 121
           +GAN  +GG  VR +CI+CPFH W F+A  G CV +P  +   P+   + TW  +E +  
Sbjct: 125 IGANFNIGGRVVRDNCIQCPFHGWIFSAETGKCVEVPYDEGRIPEQAKVTTWPCIERNNN 184

Query: 122 IWIWHDAEGREPLWEITDPPELKDFGYR--GRNEFEVSAHIQEIPENGADVPHLNAVHSS 179
           I++W+  +G EP WEI +  E+ D  +   GR E EV  HIQEIPENGAD+ HLN +H S
Sbjct: 185 IYLWYHCDGAEPEWEIPEITEITDGFWHLGGRTEHEVMCHIQEIPENGADIAHLNYLHKS 244

Query: 180 S---------LLSDLGERYPVLHEIIGRHVWNADW---TKSDDHTSLMHITQEYKVLKYD 227
           +         + +DL +  P +     +HVW+  W   ++ D H  +MH+ Q      Y 
Sbjct: 245 APPVTKGSDIIKTDLSDPQPAV-----QHVWDGKWEVKSEEDRHCGVMHLNQFMTFWGYK 299

Query: 228 LARIDVKVT--QIGPGHVRLFLKTSV-GPFYIAQSVTPLGPLLQKVIHRVYSPAYNAP-- 282
           +     K+   Q GPG V +     + G   + Q+VTP   LLQ+V  R++S   N P  
Sbjct: 300 VPLTSSKLVAEQHGPGIVHMLFDFGIWGKGVVFQTVTPEEALLQRVRFRIFS---NIPWF 356

Query: 283 VGAFLVRCEAYMFERDVTIWNSKRFVSAPAYVKTDKTIRTFRNWFGQFYSEHS 335
              F +  EA  FERDV IW++K+++ +P  VK D  I+  R WF QFY+E+S
Sbjct: 357 FVKFFMTVEAMQFERDVFIWSNKKYIKSPLLVKNDGPIQKHRRWFSQFYTENS 409


>Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical
           protein C09H10.7 protein.
          Length = 325

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 172 HLNAVHSSSLLSDLGERYPVLHEIIGRH-VWNADWTKSDDHTSLMHITQEYKVLKYD 227
           H +  H  SL    GE  PV+++  G H  W   W    D   L+   Q Y V+ YD
Sbjct: 155 HHDTFHLYSLSGPFGELLPVIYKTSGYHPQWKFCWQSHRDEAGLVDAQQNY-VVVYD 210


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 257  AQSVTPLGPLLQKVIHRVYSPAYNAPVGAFLVRCEAYMFE-RDVTIWN 303
            A+ + PL  LL K++ R    AY A    FL++     FE R V +WN
Sbjct: 1490 ARMLKPLIDLLFKLVERPTDNAYAASSRMFLIQSALCQFEWRGVELWN 1537


>U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol
           dehydrogenase protein.
          Length = 384

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 65  LGANLAVGGTVRG-SCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDG 120
           +GA  A    + G   IE  F   +F  A  C++ P S   P+G S + W V + DG
Sbjct: 212 MGAKAAGAKKIVGIDLIESKFESAKFFGATECIN-PKSVELPEGKSFQAWLVEQFDG 267


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 65  LGANLAVGGTVRG-SCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDG 120
           +GA  A    + G   IE  F K +   A  C++ P S   P+G S ++W V + DG
Sbjct: 385 MGAKAAGAKKIVGIDLIESKFEKAKMFGATECIN-PKSVELPEGKSFQSWLVEQFDG 440


>AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical
           protein H24K24.3a protein.
          Length = 384

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 65  LGANLAVGGTVRG-SCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDG 120
           +GA  A    + G   IE  F   +F  A  C++ P S   P+G S + W V + DG
Sbjct: 212 MGAKAAGAKKIVGIDLIESKFESAKFFGATECIN-PKSVELPEGKSFQAWLVEQFDG 267


>AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical
           protein H24K24.3b protein.
          Length = 386

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 65  LGANLAVGGTVRG-SCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDG 120
           +GA  A    + G   IE  F   +F  A  C++ P S   P+G S + W V + DG
Sbjct: 214 MGAKAAGAKKIVGIDLIESKFESAKFFGATECIN-PKSVELPEGKSFQAWLVEQFDG 269


>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 123 WIWHDAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAVHSSSLL 182
           W   D   RE   EITD P +K++ YR       +  I ++ +NG +   +   H   LL
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNY-YRNAQVGFWNNFIPQLHKNGKETEPVGEEH--HLL 616

Query: 183 SD 184
           SD
Sbjct: 617 SD 618


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 123 WIWHDAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAVHSSSLL 182
           W   D   RE   EITD P +K++ YR       +  I ++ +NG +   +   H   LL
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNY-YRNAQVGFWNNFIPQLHKNGKETEPVGEEH--HLL 616

Query: 183 SD 184
           SD
Sbjct: 617 SD 618


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 123 WIWHDAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAVHSSSLL 182
           W   D   RE   EITD P +K++ YR       +  I ++ +NG +   +   H   LL
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNY-YRNAQVGFWNNFIPQLHKNGKETEPVGEEH--HLL 616

Query: 183 SD 184
           SD
Sbjct: 617 SD 618


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 123 WIWHDAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAVHSSSLL 182
           W   D   RE   EITD P +K++ YR       +  I ++ +NG +   +   H   LL
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNY-YRNAQVGFWNNFIPQLHKNGKETEPVGEEH--HLL 616

Query: 183 SD 184
           SD
Sbjct: 617 SD 618


>Z75548-5|CAD31696.1|  322|Caenorhabditis elegans Hypothetical
           protein R90.5 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 178 SSSLLSDLGERYPVLHEIIGRHVWNADWTKSDDHTSLMH--ITQE-----YKVLKYDLAR 230
           ++SL S L  R     E++ +    A ++KSD   S+MH  +T E      K L  D AR
Sbjct: 168 ANSLYSTLSSRNAKAKELLAKADGVAVFSKSDFDCSVMHCRVTVEILDTVIKNLDNDHAR 227

Query: 231 IDVKVTQIGPGHVRL 245
           I   +T+IG  H  L
Sbjct: 228 ITQYLTEIGKQHRHL 242


>AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical
           protein M03F8.3 protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 133 PLWEITDPPELKDFGYRGRNEFE 155
           P  +ITDP ELK++  + R EFE
Sbjct: 54  PKTKITDPDELKEYQRKKRKEFE 76


>Z81495-4|CAB04058.1|  171|Caenorhabditis elegans Hypothetical
           protein F08G2.4 protein.
          Length = 171

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 139 DPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAV-HSSSLLSDLGERYPVLHEIIG 197
           DPP+  +   +     E+S   Q+I    +  PH  A+ H  S+ S       + H+ + 
Sbjct: 7   DPPDFNNLEMKLEERIELSREDQDIQSTSSSYPHCEALDHIVSMESTYDFHRQMAHKDLQ 66

Query: 198 RH 199
           +H
Sbjct: 67  KH 68


>AF303268-1|AAG50226.1|  171|Caenorhabditis elegans 2O123 protein.
          Length = 171

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 139 DPPELKDFGYRGRNEFEVSAHIQEIPENGADVPHLNAV-HSSSLLSDLGERYPVLHEIIG 197
           DPP+  +   +     E+S   Q+I    +  PH  A+ H  S+ S       + H+ + 
Sbjct: 7   DPPDFNNLEMKLEERIELSREDQDIQSTSSSYPHCEALDHIVSMESTYDFHRQMAHKDLQ 66

Query: 198 RH 199
           +H
Sbjct: 67  KH 68


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,619,787
Number of Sequences: 27539
Number of extensions: 428283
Number of successful extensions: 779
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 15
length of query: 348
length of database: 12,573,161
effective HSP length: 82
effective length of query: 266
effective length of database: 10,314,963
effective search space: 2743780158
effective search space used: 2743780158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)