Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001678-TA|BGIBMGA001678-PA|IPR005806|Rieske [2Fe-2S]
region
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 79 3e-15
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 79 3e-15
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 79 3e-15
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 68 8e-12
At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote... 46 5e-05
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 42 8e-04
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 42 8e-04
At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-li... 37 0.017
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c... 31 1.1
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 31 1.1
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c... 30 2.0
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 29 3.5
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla... 29 4.6
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 29 4.6
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 79.4 bits (187), Expect = 3e-15
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 7 PPYPNGWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLG 66
P N W+ VA T +LK +++ I+ C Q ++RGEDG CV C H
Sbjct: 215 PHLKNFWYPVAFTADLKHDTMVPIE--------CFEQPWVIFRGEDGKPGCVRNTCAHRA 266
Query: 67 ANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDGAIWIWH 126
L +G TV I+CP+H W ++ G C +P + + V I++ +E +G IWIW
Sbjct: 267 CPLDLG-TVNEGRIQCPYHGWEYSTDGECKKMPSTKLLK--VKIKSLPCLEQEGMIWIWP 323
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQE--IPENGADVPHLNAVHSSS 180
E P+ PP G+ E + ++ + +N D+ H H+S+
Sbjct: 324 GDEPPAPILPSLQPPS----GFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTST 375
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 79.4 bits (187), Expect = 3e-15
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 7 PPYPNGWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLG 66
P N W+ VA T +LK +++ I+ C Q ++RGEDG CV C H
Sbjct: 215 PHLKNFWYPVAFTADLKHDTMVPIE--------CFEQPWVIFRGEDGKPGCVRNTCAHRA 266
Query: 67 ANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDGAIWIWH 126
L +G TV I+CP+H W ++ G C +P + + V I++ +E +G IWIW
Sbjct: 267 CPLDLG-TVNEGRIQCPYHGWEYSTDGECKKMPSTKLLK--VKIKSLPCLEQEGMIWIWP 323
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQE--IPENGADVPHLNAVHSSS 180
E P+ PP G+ E + ++ + +N D+ H H+S+
Sbjct: 324 GDEPPAPILPSLQPPS----GFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTST 375
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 79.4 bits (187), Expect = 3e-15
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 7 PPYPNGWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLG 66
P N W+ VA T +LK +++ I+ C Q ++RGEDG CV C H
Sbjct: 215 PHLKNFWYPVAFTADLKHDTMVPIE--------CFEQPWVIFRGEDGKPGCVRNTCAHRA 266
Query: 67 ANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTWCVVETDGAIWIWH 126
L +G TV I+CP+H W ++ G C +P + + V I++ +E +G IWIW
Sbjct: 267 CPLDLG-TVNEGRIQCPYHGWEYSTDGECKKMPSTKLLK--VKIKSLPCLEQEGMIWIWP 323
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFEVSAHIQE--IPENGADVPHLNAVHSSS 180
E P+ PP G+ E + ++ + +N D+ H H+S+
Sbjct: 324 GDEPPAPILPSLQPPS----GFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTST 375
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 68.1 bits (159), Expect = 8e-12
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 41 HGQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVS--- 97
+ + + +Y+ +G RC + CPH A L+ G + G +EC +H W+F G CV
Sbjct: 108 YDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIPQ 166
Query: 98 LPGSDIAPKGVSIRTWCVVETDGAIWIW 125
LP S PK ++T+ V ++ G +W+W
Sbjct: 167 LPASAKIPKAACVKTYEVKDSQGVVWVW 194
>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
similar to lethal leaf-spot 1 from Zea mays
[gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
domain
Length = 537
Score = 45.6 bits (103), Expect = 5e-05
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 59 DAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLP-GSDIAPKGVSIRT--WCV 115
D CPH A L+ G ++C +H W F G+C +P + P+ ++++ C
Sbjct: 127 DDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACA 186
Query: 116 VE-----TDGAIWIWHDAEGREPLWEITDPPELKD 145
++ + G +++W D G + I +PP L D
Sbjct: 187 IKFPTMVSQGLLFVWPDENGWDRANSI-EPPRLPD 220
>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 559
Score = 41.5 bits (93), Expect = 8e-04
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 56 RCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTW-- 113
+ +D CPH A L+ G + ++C +H W FN +G C +P P G + T+
Sbjct: 121 KVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIP--QAPPDGPPVHTFKQ 178
Query: 114 -CVVETDGA-----IWIWHDAEGR-EPLWEITDP---PELKDFGY-RGRNEFEVSAHIQE 162
CV IW W +++ + + + E P PEL+D + + ++
Sbjct: 179 ACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDV 238
Query: 163 IPENGADVPHLNAVH 177
+ EN D H+ H
Sbjct: 239 LVENLMDPAHVPYAH 253
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 41.5 bits (93), Expect = 8e-04
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 56 RCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTCVSLPGSDIAPKGVSIRTW-- 113
+ +D CPH A L+ G + ++C +H W FN +G C +P P G + T+
Sbjct: 121 KVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIP--QAPPDGPPVHTFKQ 178
Query: 114 -CVVETDGA-----IWIWHDAEGR-EPLWEITDP---PELKDFGY-RGRNEFEVSAHIQE 162
CV IW W +++ + + + E P PEL+D + + ++
Sbjct: 179 ACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDV 238
Query: 163 IPENGADVPHLNAVH 177
+ EN D H+ H
Sbjct: 239 LVENLMDPAHVPYAH 253
>At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-like)
similar to Choline monooxygenase, chloroplast precursor
(EC 1.14.15.7) from {Amaranthus tricolor} SP|Q93XE1,
{Beta vulgaris} SP|O22553; contains Pfam Rieske [2Fe-2S]
domain PF00355
Length = 422
Score = 37.1 bits (82), Expect = 0.017
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 12 GWFAVAETRELKVGSVLSIDALGKYSFGCHGQNLCVYRGEDGLARCVDAYCPHLGANLAV 71
GW AV + ++K LG F V R E+G C H A++
Sbjct: 95 GWQAVGYSDQIKESRDFFTGRLGDVDF-------VVCRDENGKIHAFHNVCSH-HASILA 146
Query: 72 GGTVRGSCIECPFHKWRFNAAGTCV 96
G R SC C +H W ++ +G+ V
Sbjct: 147 SGNGRKSCFVCLYHGWTYSLSGSLV 171
>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 673
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFE 155
+AE R P +ITD EL D+ R R EFE
Sbjct: 40 EAEIRPPKQKITDSTELSDYRLRRRKEFE 68
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFE 155
+AE R P +ITD EL D+ R R EFE
Sbjct: 54 EAEIRPPKQKITDSTELSDYRLRRRKEFE 82
>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 657
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 127 DAEGREPLWEITDPPELKDFGYRGRNEFE 155
+AE R P ITD EL D+ R R EFE
Sbjct: 53 EAEFRPPNQTITDSAELSDYRLRRRKEFE 81
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 35 KYSFGCHGQNLCV-------YRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIE 81
K+SFG N+ + GE+GL V++ P +G NL V +CIE
Sbjct: 281 KFSFGFDASNVLKGLGLTSPFSGEEGLTEMVES--PEMGKNLCVSNIFHKACIE 332
>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR class),
putative domain signature NBS-LRR exists, suggestive of a
disease resistance protein.
Length = 1424
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 158 AHIQEIPENGADVPHLNAVHS-SSLLSDLGERYPVLHEII 196
+H+ E+P+N + H+++ +SL +L E YP LHE++
Sbjct: 1084 SHLMELPQNLQSL-HIDSCDGLTSLPENLTESYPNLHELL 1122
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 26 SVLSIDALGKYSF-GCHGQNLCVYRGEDGLARCVDAYCPHLG 66
+VL I A GK F G + +CV+R E + CV H G
Sbjct: 268 AVLCIAAAGKLLFSGAADKKICVWRREGKVHTCVSVLTGHTG 309
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.139 0.456
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,335,158
Number of Sequences: 28952
Number of extensions: 418604
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 18
length of query: 348
length of database: 12,070,560
effective HSP length: 82
effective length of query: 266
effective length of database: 9,696,496
effective search space: 2579267936
effective search space used: 2579267936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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