Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001677-TA|BGIBMGA001677-PA|IPR001810|Cyclin-like F-box
         (427 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   6.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   6.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   6.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   8.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.6  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 131 GVVYYDLDTLQRSIRAVIY 149
           G+VY++L +  R+I +V+Y
Sbjct: 76  GIVYFELLSPNRTINSVVY 94


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 131 GVVYYDLDTLQRSIRAVIY 149
           G+VY++L    R+I +V+Y
Sbjct: 77  GIVYFELLPPNRTINSVVY 95


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 138 DTLQRSIRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIASISHDNCKLFYV 197
           DTL   ++  I+GD  +       + ++++ + LF    +  +P H   +      L+  
Sbjct: 245 DTLNSVVQGAIHGDSRQIQSRKSVIKMLSAVVILFF---ICWAPFHTQRL------LYVY 295

Query: 198 IDNVVYYVSLNESIY 212
                YY  LNE +Y
Sbjct: 296 AQESDYYPDLNEWLY 310


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 131 GVVYYDLDTLQRSIRAVIY 149
           G+VY++L    R+I +V+Y
Sbjct: 198 GIVYFELLPPNRTINSVVY 216


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 330 IYHSPFTNGELDFMNHMPLKQYNFMERS 357
           +Y+SP T+  L ++N  P  +  + E +
Sbjct: 266 LYYSPLTSHSLYYVNMEPFMKSQYEENN 293


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 112 EIQG-FRYLRNGTAGVHTKAGVVYYDLDTLQR 142
           EI G F     GT G HT+A    YD+   +R
Sbjct: 298 EIAGKFNLQVRGTRGEHTEAEGGIYDISNKRR 329


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,774
Number of Sequences: 429
Number of extensions: 5275
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 427
length of database: 140,377
effective HSP length: 60
effective length of query: 367
effective length of database: 114,637
effective search space: 42071779
effective search space used: 42071779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)