GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001677-TA|BGIBMGA001677-PA|IPR001810|Cyclin-like F-box
         (427 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       28   0.15 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    28   0.15 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.78 
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    24   2.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    24   2.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   7.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 30  QLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRL 73
           Q  KC   C+  K+++++  K HS  Y++  +D     K+ H L
Sbjct: 260 QCNKCDYTCVN-KSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 302


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
          protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 30 QLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRL 73
          Q  KC   C+  K+++++  K HS  Y++  +D     K+ H L
Sbjct: 18 QCNKCDYTCVN-KSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 60


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 148 IYGDYNRYVETDDTVLLM-NSNLHLFITRKLIRSPKHIASISHDNCKLFYVIDNVVY 203
           +YG   +  E D++  +M N  +H       + S + ++    DN K+ YV++   Y
Sbjct: 146 VYGKPEQNYEVDESASVMTNGRIHGIQPSPTLPSKEEVSKKIDDNQKVGYVVEGRNY 202


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 168 NLHLFITRKLIRSPKHIASISHDNCKLFYVIDNVVYYVSLNESI 211
           +LH F    +    KH +S S+ + K   ++D ++ Y S   +I
Sbjct: 240 SLHSFSNNVIAERKKHFSSSSYSSRKRLAMLDLLLKYKSEGANI 283


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 168 NLHLFITRKLIRSPKHIASISHDNCKLFYVIDNVVYYVSLNESI 211
           +LH F    +    KH +S S+ + K   ++D ++ Y S   +I
Sbjct: 240 SLHSFSNNVIAERKKHFSSSSYSSRKRLAMLDLLLKYKSEGANI 283


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 61  KDFKNVYK-FAHRLSRPQITWHELYRSLTLWRQLHLARQHYDEF 103
           K  ++V+K F H +      WHEL        ++ L   H  +F
Sbjct: 76  KQKEDVHKVFQHLMIHRPNWWHELETKFNPHHEIKLQHLHQSKF 119


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,967
Number of Sequences: 317
Number of extensions: 4903
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 427
length of database: 114,650
effective HSP length: 59
effective length of query: 368
effective length of database: 95,947
effective search space: 35308496
effective search space used: 35308496
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)