GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001677-TA|BGIBMGA001677-PA|IPR001810|Cyclin-like F-box
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    33   0.077
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    33   0.077
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    31   0.23 
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    31   0.41 
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   1.2  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    29   1.2  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    29   1.2  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    28   2.2  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    28   2.9  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   3.8  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   3.8  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    27   3.8  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    27   3.8  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   5.0  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   6.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   6.6  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   6.6  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    26   8.8  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   8.8  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    26   8.8  

>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 440

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 10 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKF 69
          P   F  E L H+   L A  L     V   W +++   + +H+L+    G   K++ + 
Sbjct: 10 PASIFSHETLLHVLNDLSAHDLAALERVSRSWNSIVRRSSVWHNLYLSEFGT--KHLRRH 67

Query: 70 AHRLSRPQITWHELYRSLTLWR 91
            R+ + +  W  L+R  + W+
Sbjct: 68 G-RIEKKRRNWKGLFRRQSNWK 88


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 12  ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 55
           E FP E+   +F++L    L KC+ +  RWK +++    + +L+
Sbjct: 74  EVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALY 117


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 662

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 2  SDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI-DTLNKYHSLWYKFCG 60
          S N    T L + P EIL  IF+FL  + L   +  C  WK ++ D L+   + ++ F G
Sbjct: 23 SSNNTNRTVL-NLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHFAG 81


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 11  LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFC 59
           L   P EI   I +FL A+ L +  +V   WK + D       +W++ C
Sbjct: 110 LSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADD----DVIWHRMC 154


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 183 HIASISHDNCKLFYVIDNVVYYVSLNESIYAVYLSDKELKSHFLVQSTEGIICL 236
           +  S S+D+C  +Y+I N+ +Y  + +S     +   E K  +  +S   I+CL
Sbjct: 4   YFLSKSYDDCSRYYIISNMAFYFPVYDSDSPTTVHHDERKESW--RSHGFIVCL 55


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 11  LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF-KNVYKF 69
           L + P  I+  I   L       CR V   W  ++D    Y    +   G    +N +K+
Sbjct: 239 LSNLPFSIVQSILLNLDIHSFLSCRLVSPTWNRILDVHTSYWKHMFSLFGFQINENDWKY 298

Query: 70  AH-RLSRP 76
           A+  L+RP
Sbjct: 299 ANPNLNRP 306


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 15  PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF 63
           P E+L  I   L  K + +C +VC  W+   D + K  SL   FC  DF
Sbjct: 140 PREVLLCILQQLNFKSIVQCMQVCKHWR---DCIKKEPSL---FCCLDF 182


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 176 KLIRSPKHIASISHDNCKLFYVIDNVVYYVSLNESIYAVYL-SDKELKSH 224
           K++ S  H+ S + D    F  +  + +   + + +YAVY  S K+L  H
Sbjct: 247 KVLES-SHLRSFAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSGKQLSCH 295


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 181 PKHIASISHDNCKLFYVIDNVVYYVSLNESIYAVYLSDKELKSHF 225
           PK  ++ S D  K  Y I  +   + L E I  ++++  E+++HF
Sbjct: 7   PKSASTYSIDRRKDGYTIQKITRILKLAECIDEMHIAKHEIRAHF 51


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKN-VIDTL 48
          P E+  +I ++L A +L     VC  W+N +I TL
Sbjct: 4  PNEVCFNILSYLEADELRCKSTVCTSWRNFIIPTL 38


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 9  TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK--DFKNV 66
          +P      +IL  I T+L  K +    E C     V D      ++W++FC +     NV
Sbjct: 4  SPFLELSYDILLEISTYLDYKDIVHLSETCKSLSYVFDD----KTIWHRFCARVQGLTNV 59

Query: 67 YKFA-HRLSRPQITWHE 82
                   RP   W +
Sbjct: 60 VPVVDDNYKRPYAVWKD 76


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 292 QWMFALCFKLPE-GPLRDIVTVRS 314
           QW+F  C+KLPE     DI T+RS
Sbjct: 174 QWIFCFCYKLPELLNGEDISTLRS 197


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 292 QWMFALCFKLPE-GPLRDIVTVRS 314
           QW+F  C+KLPE     DI T+RS
Sbjct: 174 QWIFCFCYKLPELLNGEDISTLRS 197


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 319 FFVGSDWGVLRIYHSPFTNG-ELDFMNHMPLKQYNFMER 356
           F+     G + +YH P+ NG    F     +KQ + ++R
Sbjct: 30  FYFKDHLGTISVYHEPYFNGPTTSFPESCAIKQVHLLQR 68


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 168 NLHLFITRKLIRSPKHIASISHDNC 192
           NLH  + + L R+P++I  + +D+C
Sbjct: 116 NLHELVWQTLSRNPEYIKGLCYDSC 140


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 151 DYNRYVETDDTVLLMNSNLHLFITRKLIRSPK-HIASISHDNCKLFYVIDNVVYYVSLNE 209
           +  R VET   +  + S+LH F+  K IR  + ++  +S    +   ++ + +    +N 
Sbjct: 590 EIKRSVETGRAICCICSSLHKFLYSKSIRKDELYVERVS----RFALMVKSAIEAFGINT 645

Query: 210 SIYAVYL-SDKELKSHFLVQSTEGIICLGH 238
            + A YL SD +L    L+  T+ I    H
Sbjct: 646 FVEASYLVSDNQL---VLIDQTKAIDSYDH 672


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 367 IIEIEVMEIVDGHIIMVAMPKKVAVLTFSHCFKRAASIAMFSNSNLQRVKFL 418
           I E    ++ D  I +  + K +  ++  HC     +IA  ++SN+QRV +L
Sbjct: 134 IYETNTKDVKDRLIGITGLRKILEHVSKMHCQLGTVAIAGLNSSNIQRVIYL 185


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 268 EESNLLHEFNKYNLFDHFDWRVY-IQWMFALCFKL 301
           E+ N+  E     +F H DWR + ++++   CF L
Sbjct: 27  EDYNMNPELENPGMFKHVDWRDFRLEFVILACFFL 61


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 85  RSLTLWRQLHLARQHYD--EFASATTVASEIQ 114
           R  T W   HL R+HYD   F  + T AS I+
Sbjct: 278 RVQTFWTASHLWRRHYDILPFNVSPTTASPIE 309


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 183 HIASISHDNCKLFYVIDNVVYYVSLNESIYAVYLSDKELKSHFLVQSTE 231
           HI  + H   KL Y        V+LN +  + ++S +E+   ++ + T+
Sbjct: 347 HIEGLKHKTHKLIYDTFRTEKLVALNATPGSQFISAEEMNQKYISEQTQ 395


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,595
Number of Sequences: 5004
Number of extensions: 93830
Number of successful extensions: 276
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 23
length of query: 427
length of database: 2,362,478
effective HSP length: 75
effective length of query: 352
effective length of database: 1,987,178
effective search space: 699486656
effective search space used: 699486656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)