Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001677-TA|BGIBMGA001677-PA|IPR001810|Cyclin-like F-box
(427 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.005
SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10) 39 0.009
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083) 36 0.063
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 35 0.15
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05) 35 0.15
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 33 0.34
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 33 0.34
SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05) 33 0.44
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.44
SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12) 32 1.0
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 31 1.4
SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45) 30 3.1
SB_1786| Best HMM Match : HC2 (HMM E-Value=0.12) 30 4.1
SB_21039| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 29 7.2
SB_10338| Best HMM Match : Delta_lysin (HMM E-Value=6) 29 7.2
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.5
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 29 9.5
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 29 9.5
SB_22493| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 29 9.5
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 29 9.5
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.5
>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 39.5 bits (88), Expect = 0.005
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 3 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKD 62
++ D + TEIL IF+ L A+ + + C R + L LW + C +D
Sbjct: 13 ESNDGFCYITCLSTEILLFIFSLLDARSIVRASRACTR---LHFALKYCDPLWRRLCRRD 69
Query: 63 FKNVYKFAHRLSRPQITWHELYRSLTLWR 91
Y+ A P T++++YRSL++ R
Sbjct: 70 ----YELALSFRAPFDTYYDIYRSLSMSR 94
>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
Length = 216
Score = 38.7 bits (86), Expect = 0.009
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFA 70
+E T++L HIF+ L A+ L C +VC +W V + + L ++ C K +N+
Sbjct: 1 MEILGTDVLLHIFSHLDAQSLCSCSQVCKQWYEVSTISSLWKMLVFQQCRK--RNI---R 55
Query: 71 HRLSRPQITWHELYRSL 87
L R + TW E + L
Sbjct: 56 PHLGRAE-TWKERFFQL 71
>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
Length = 585
Score = 35.9 bits (79), Expect = 0.063
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 132 VVYYDLDTLQRSIRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIASISHDN 191
++Y+D T+ I +IY D N + +D+T+++ + N T I S I I HDN
Sbjct: 439 IIYHDNTTISSDITIIIYHD-NTTISSDNTIIIYHDN-----TTTSISSDNTII-IYHDN 491
Query: 192 CKLFYVIDN--VVYY--VSLNESIYAVYLSDKELKSHFLV 227
+ DN ++Y+ +++ +I +Y + + S+ ++
Sbjct: 492 TTISISSDNTIIIYHDNTTISSNIIIIYHDNTIISSNTII 531
Score = 33.1 bits (72), Expect = 0.44
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 132 VVYYDLDTLQRSIRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIASISHDN 191
++Y+D T+ I +IY D N + +D+T+++ + N + +I SIS D
Sbjct: 378 IIYHDNTTISSDITIIIYHD-NTTISSDNTIIIYHDNTIISSNTIIIYHDNTTISISSDI 436
Query: 192 CKLFYVIDNVVYYVSLNESIY 212
+ Y DN + IY
Sbjct: 437 TIIIY-HDNTTISSDITIIIY 456
>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 35.1 bits (77), Expect = 0.11
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 11 LESFPTEILSHIFTFLPA--KQLTKCREVCIRWKNVIDT 47
+ES P E+++HIF+F +L R VC +WK +ID+
Sbjct: 1 MESLPEEMIAHIFSFFHQIYGKLLLLRTVCRKWKIIIDS 39
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 34.7 bits (76), Expect = 0.15
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 239 TGKNL-NIITLERNIYTLIGHELQLQCTITEESNLLHEFNKYNLFDHFDWRVYIQWMFAL 297
TG++L +I RNI + GH +LQ T E +L K +L D FD + AL
Sbjct: 556 TGQSLVDIFPFLRNILPIYGHTKELQETHDEWQKILWRKYKQHL-DSFDVSNIRDYTDAL 614
Query: 298 CFKLPEGP---------LRDIVTVRSYGDIFFVGSD-------WGVLRIYHSPFTNGELD 341
E L D V + +F GS+ W +L + H P ++
Sbjct: 615 LLAKQEAGVENTTDQKYLEDKYIVSAISTVFIAGSETTATSLCWAILYLIHFPKIQDQI- 673
Query: 342 FMNHMPLKQYNFMER-SDCPVLSVCPIIEIEVMEIV 376
+ + + N ER S + +CPI+E + E++
Sbjct: 674 ---YASVGKLNLQERQSFVEMRKMCPILEAFIAEVL 706
>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
Length = 1154
Score = 34.7 bits (76), Expect = 0.15
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 82 ELYRSLTLWRQ-LHLARQHYDEFASA--TTV-ASEIQGFRYLRNGTAGVHTKAGVVYYDL 137
E YR L R +H + Y + ++ TT+ A + + +RYL +H G Y L
Sbjct: 536 ETYRYLNTNRTTIHALKGEYYRYLNSNRTTIHALKGETYRYLNANRTTIHALKGETYRYL 595
Query: 138 DTLQRSIRAVIYGDYNRYVETDDTVL 163
+T + +I A + G+Y RY+ ++ T +
Sbjct: 596 NTNRTTIHA-LKGEYYRYLNSNRTTI 620
Score = 33.1 bits (72), Expect = 0.44
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 95 LARQHYDEFASATTVASEIQG--FRYLRNGTAGVHTKAGVVYYDLDTLQRSIRAVIYGDY 152
L ++Y S T ++G +RYL +H G Y L+T + +I A + G+Y
Sbjct: 497 LKGEYYHYLNSNRTTIHALKGEYYRYLNANRTTIHALKGETYRYLNTNRTTIHA-LKGEY 555
Query: 153 NRYVETDDTVL 163
RY+ ++ T +
Sbjct: 556 YRYLNSNRTTI 566
Score = 33.1 bits (72), Expect = 0.44
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 71 HRLSRPQITWH----ELYRSLTLWRQ-LH-LARQHYDEFASATTVASEIQG--FRYLRNG 122
H L+ + T H E YR L R +H L + Y + T ++G +RYL +
Sbjct: 647 HYLNTNRTTIHALKGETYRYLNANRTTIHALKGETYRYLNTNRTTIHALKGEYYRYLNSN 706
Query: 123 TAGVHTKAGVVYYDLDTLQRSIRAVIYGDYNRYVETDDTVL--LMNSNLH-LFITRKLIR 179
+H G Y L+T + +I A + G+ RY+ T+ T + L + H L RK I
Sbjct: 707 RTTIHALKGETYRYLNTNRTTIHA-LKGETYRYLNTNRTTIHALKGEHYHYLNSNRKTIH 765
Query: 180 SPK 182
+ K
Sbjct: 766 ASK 768
Score = 32.3 bits (70), Expect = 0.77
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 82 ELYRSLTLWRQ-LHLARQHYDEFASA--TTV-ASEIQGFRYLRNGTAGVHTKAGVVYYDL 137
E YR L R +H + Y + ++ TT+ A + + +RYL +H G Y+ L
Sbjct: 590 ETYRYLNTNRTTIHALKGEYYRYLNSNRTTIHALKGEHYRYLNASRTTIHALKGETYHYL 649
Query: 138 DTLQRSIRAVIYGDYNRYVETDDTVL 163
+T + +I A + G+ RY+ + T +
Sbjct: 650 NTNRTTIHA-LKGETYRYLNANRTTI 674
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 82 ELYRSLTLWRQ-LHLARQHYDEFASA--TTV-ASEIQGFRYLRNGTAGVHTKAGVVYYDL 137
E YR L R +H + Y + ++ TT+ A + + +RYL +H G Y L
Sbjct: 824 ETYRYLNTNRTTIHALKGEYYRYLNSNRTTIHALKGETYRYLNTNRTTIHALKGETYRYL 883
Query: 138 DTLQRSIRAVIYGDYNRYVETDDTVL 163
+T + +I A + G++ Y+ ++ T +
Sbjct: 884 NTNRTTIHA-LKGEHYHYLNSNRTTI 908
Score = 31.1 bits (67), Expect = 1.8
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 82 ELYRSLTLWRQ-LH-LARQHYDEFAS--ATTVASEIQGFRYLRNGTAGVHTKAGVVYYDL 137
E YR L R +H L +HY S T AS+ + +RYL +H G Y L
Sbjct: 734 ETYRYLNTNRTTIHALKGEHYHYLNSNRKTIHASKGETYRYLNTNRTTIHALKGEYYRYL 793
Query: 138 DTLQRSIRAVIYGDYNRYVETDDTVL 163
++ + +I A + G+ RY+ + T +
Sbjct: 794 NSNRTTIHA-LKGETYRYLNANRTTI 818
Score = 31.1 bits (67), Expect = 1.8
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 82 ELYRSLTLWRQ-LH-LARQHYDEFASATTVASEIQG--FRYLRNGTAGVHTKAGVVYYDL 137
E YR L R +H L + Y + T ++G +RYL + +H G Y L
Sbjct: 806 ETYRYLNANRTTIHALKGETYRYLNTNRTTIHALKGEYYRYLNSNRTTIHALKGETYRYL 865
Query: 138 DTLQRSIRAVIYGDYNRYVETDDTVL 163
+T + +I A + G+ RY+ T+ T +
Sbjct: 866 NTNRTTIHA-LKGETYRYLNTNRTTI 890
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 82 ELYRSLTLWRQ-LH-LARQHYDEFASATTVASEIQG--FRYLRNGTAGVHTKAGVVYYDL 137
E YR L R +H L + Y + T ++G +RYL +H G Y+ L
Sbjct: 842 EYYRYLNSNRTTIHALKGETYRYLNTNRTTIHALKGETYRYLNTNRTTIHALKGEHYHYL 901
Query: 138 DTLQRSIRAVIYGDYNRYVETDDTVL 163
++ + +I A + G+Y RY+ ++ T +
Sbjct: 902 NSNRTTIHA-LKGEYYRYLNSNRTTI 926
Score = 30.3 bits (65), Expect = 3.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 79 TWHELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLD 138
T+H L + T L Y T A + + +RYL +H G Y L+
Sbjct: 645 TYHYLNTNRTTIHALKGETYRYLNANRTTIHALKGETYRYLNTNRTTIHALKGEYYRYLN 704
Query: 139 TLQRSIRAVIYGDYNRYVETDDTVL 163
+ + +I A + G+ RY+ T+ T +
Sbjct: 705 SNRTTIHA-LKGETYRYLNTNRTTI 728
>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.3 bits (75), Expect = 0.19
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 7 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRW 41
+VT + + P EIL+ IF++L K L + +VC W
Sbjct: 108 QVTLIHNLPPEILNKIFSYLNPKDLCRTSQVCKSW 142
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 33.5 bits (73), Expect = 0.34
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 55
SFP ++ +IF +L K L +VC RW + L K SLW
Sbjct: 28 SFPDNVMLNIFRYLDIKALCAASKVCRRWYH----LGKDRSLW 66
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 33.5 bits (73), Expect = 0.34
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 2 SDNEDEVTP-LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
+D++ + P +E P +L +F+FL + L K VC RW+++
Sbjct: 16 NDSKKQEKPSIERLPDSVLLQVFSFLCQRSLCKLALVCKRWRDI 59
>SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)
Length = 637
Score = 33.1 bits (72), Expect = 0.44
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 14 FPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRL 73
F EIL IF + A LTK VC +W ++++K SLW + + +++ +
Sbjct: 4 FLDEILLQIFRYFDAFILTKICSVCKQW----NSISKTPSLWRRLVLRRWQSQRFLFANV 59
Query: 74 SRPQITWHELYRSL 87
+ W ++Y+ +
Sbjct: 60 PPSSVNWRKVYQEI 73
>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 33.1 bits (72), Expect = 0.44
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHR 72
S +E+LS I ++LPAK L E C R+K + + +LW C K F A R
Sbjct: 18 SLSSEVLSIILSYLPAKTLLNLSETCRRFKELCFECD---TLWKDLC-KQFS-----ASR 68
Query: 73 LSRPQITW 80
RP W
Sbjct: 69 DLRPSKIW 76
>SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTL--NKYHS 53
++ P E+L +IF LPA+ L +C R++ ++D++ N+Y S
Sbjct: 1 MDLLPDELLVNIFRHLPARDLIALSFLCRRFRRLLDSVQFNRYVS 45
>SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)
Length = 433
Score = 31.9 bits (69), Expect = 1.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 1 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTL 48
+S N L++ PT L+ + ++L A+ L +C VC R+ + +L
Sbjct: 4 VSQNWLSCLSLDNLPTIPLASVLSYLNARDLARCSRVCRRFDEICSSL 51
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNVID 46
P E++S+IF+FLP + VC W D
Sbjct: 20 PQEVVSYIFSFLPLADIKSSARVCHLWAKASD 51
>SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
Length = 352
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 205 VSLNESIYAVYLSDKELKSHFLVQSTEGI----ICLGHTGKNLNIITLERNIYTLIGHEL 260
+++++ + AV+++ ++ H + GI +C TGK L+ + +++T+
Sbjct: 48 LAISDMMVAVFMTLDQVFLHGVATHPAGIAGDYVCKFVTGKLLSWVGSVASVFTMTAVGF 107
Query: 261 QLQCTITEESNLLHEFNKYNLFDHFDWRVYIQ-WMFALCFKLP 302
+ I + N+ + WRV I W+FA CF +P
Sbjct: 108 ERFYAIVHPLS-----NRGRITKRVFWRVIIACWVFACCFNIP 145
>SB_1786| Best HMM Match : HC2 (HMM E-Value=0.12)
Length = 379
Score = 29.9 bits (64), Expect = 4.1
Identities = 34/197 (17%), Positives = 78/197 (39%), Gaps = 5/197 (2%)
Query: 81 HELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTL 140
+E+Y T+ +++ R +E + TVA+E+ R + N + T A + Y L T+
Sbjct: 109 NEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEM-YALRTV 167
Query: 141 QR---SIRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIASISHDNCKLFYV 197
++R V Y ++ L ++ R + + +++++ L V
Sbjct: 168 ANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTV 227
Query: 198 IDNVVYYVSLNESIYAVYLSDKELKS-HFLVQSTEGIICLGHTGKNLNIITLERNIYTLI 256
+ + ++ +YA+ E+ + + + + + L + E N +
Sbjct: 228 ANEMYALRTVANEMYALRTVANEMYALRTVANEMNALRTVANEMNALRTVVNEMNALRTV 287
Query: 257 GHELQLQCTITEESNLL 273
+E+ T+ E N L
Sbjct: 288 ANEMNALRTVANEMNAL 304
>SB_21039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.9 bits (64), Expect = 4.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 209 ESIYAVYLSDKELKSHFLVQSTEGIICLGHTGKNLNIITLER-NIYTLIGHEL 260
E++ SD HF + G I TG+ + ++ ER NIYTL EL
Sbjct: 43 ENLVTCSESDAVCSKHFFKYAETGFIAYEATGRRFSSVSKERENIYTLATLEL 95
>SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVID 46
S P E+L I FLPA+ L R V K+++D
Sbjct: 23 SLPEEVLIIILKFLPAQDLVNIRLVSTNLKHLVD 56
>SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 96 ARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGV--VYYDLDTLQRSIRAVIYGDY 152
AR Y + + T A RY R GT VHT+ V Y DT+ R ++ Y
Sbjct: 513 ARSQYTRYGTVTVHAVWYGHSRYTRYGTVTVHTRGMVRSQYTRYDTVTVHTRGMVRSQY 571
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 29.1 bits (62), Expect = 7.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 32 TKCREVCIRWKNVID--TLNKYHSLWYKFCGKDFK-NVYKFAHRLSRPQIT 79
T+CREV I V +L KYH LW F GK K + K + RP +T
Sbjct: 31 TRCREVGITLFTVSHRKSLWKYHELWPLFSGKLVKPHPSKLFYIPQRPYMT 81
>SB_10338| Best HMM Match : Delta_lysin (HMM E-Value=6)
Length = 121
Score = 29.1 bits (62), Expect = 7.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 326 GVLRIYHSPFTNGELDFMN-HMPLKQYNFMERSDCPVLSVCPIIEIEVMEIVDGHIIMVA 384
G + H F LD P ++N E +D VL PII I V EI D H +++
Sbjct: 32 GYIAEAHKKFKKFFLDVSTVEDPESRFNIDEYTDV-VLLTKPIIYISVQEICDTHTLLLE 90
Query: 385 MPKKVA 390
+++A
Sbjct: 91 HREEIA 96
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.7 bits (61), Expect = 9.5
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFC 59
+ P + L +F FL K L +VC W+ SLW K C
Sbjct: 5 TLPLDELVLVFDFLHPKDLVNAAQVCKLWREAAGV----SSLWKKHC 47
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 28.7 bits (61), Expect = 9.5
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 55
++ P ++ +F+FL L + VC +W+ + HSLW
Sbjct: 1 MDGLPDVVVLKVFSFLSVADLGQVSRVCYQWQRIAYD----HSLW 41
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 28.7 bits (61), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 82 ELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHT 128
E R L W +L+ A+++ + + VASE QG LR G+HT
Sbjct: 1099 EAGRRLAKWNRLNRAKKNAVQHVESP-VASESQGREGLRPRAEGIHT 1144
>SB_22493| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 208
Score = 28.7 bits (61), Expect = 9.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 328 LRIYHSPFTNGELDFMNHMPLKQYNFMERSDCPVLS 363
+ + H+ FT GEL P+++ F+ R C + +
Sbjct: 1 MMVLHAVFTGGELTLFFEQPIRRPRFVARRQCSLFN 36
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 28.7 bits (61), Expect = 9.5
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 12 ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAH 71
+ P +L IF FL K++ EVC +W + S++ K + + K
Sbjct: 26 QDLPDSLLLFIFGFLTPKEVLTAGEVCRKWHRASMDEVLWKSIFIK--SYNLSGIEKSQL 83
Query: 72 RLSRPQITWHELYRSL---TLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHT 128
+L W + + L T + + +H DE VA G + + + H
Sbjct: 84 QLPSSSTLWIKEFERLYCETPLIEAQVLNEHTDE---VLHVAFSHNG-KMFASSSKDCHA 139
Query: 129 KAGVVYYDLDTLQRSIRAVIYG-DYNRYVE--TDDTVLLMN 166
V D L+ + YG +Y ++ E +DDT+LL++
Sbjct: 140 ILWDVTGDSVILRERLVFKQYGWEYVQFCEFNSDDTLLLVS 180
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 388 KVAVLTFSHCFKRAASIAMFSNSNLQRVKFLKIEEEVGAI 427
K AVL F AA + F +S + R KFL+ E+ +G I
Sbjct: 657 KRAVLAFDELIMAAAGLHPFQSSRILRTKFLE-EKTIGLI 695
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,028
Number of Sequences: 59808
Number of extensions: 604904
Number of successful extensions: 1664
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1612
Number of HSP's gapped (non-prelim): 51
length of query: 427
length of database: 16,821,457
effective HSP length: 84
effective length of query: 343
effective length of database: 11,797,585
effective search space: 4046571655
effective search space used: 4046571655
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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