Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001677-TA|BGIBMGA001677-PA|IPR001810|Cyclin-like F-box
(427 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical pr... 40 0.003
U64849-1|AAC48052.3| 936|Caenorhabditis elegans Hypothetical pr... 40 0.004
U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical pr... 33 0.51
U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic... 32 0.68
U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical pr... 32 0.68
AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical ... 31 1.2
AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical ... 31 1.2
AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical ... 31 1.2
AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical ... 31 1.2
AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical ... 31 1.6
AC090999-7|AAK26142.1| 438|Caenorhabditis elegans Hypothetical ... 31 2.1
AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical ... 31 2.1
U51993-1|AAB36851.2| 377|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC087081-15|AAK66031.1| 267|Caenorhabditis elegans Hypothetical... 30 2.7
Z81584-7|CAE17905.1| 202|Caenorhabditis elegans Hypothetical pr... 29 4.8
L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical pr... 29 4.8
L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical pr... 29 4.8
U23515-1|AAK21454.2| 511|Caenorhabditis elegans Hypothetical pr... 29 8.3
>Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical
protein T01E8.4 protein.
Length = 406
Score = 39.9 bits (89), Expect = 0.003
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 9 TPLESFPTEILSHIFTFLPAKQL-TKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVY 67
T L S P+E+L H+FT+LP +QL T+ VC R+ +++ +K+ S + K
Sbjct: 7 TELISLPSELLCHLFTYLPQRQLITEIPLVCRRFNTILND-DKFWSRRIRTEQKVRLPDC 65
Query: 68 KFAHRLSRPQITWHELYRSLTLWR 91
+ H P+ +++ ++R WR
Sbjct: 66 ELKHPEYEPKKSFYAMHRQRDRWR 89
>U64849-1|AAC48052.3| 936|Caenorhabditis elegans Hypothetical
protein K04A8.6 protein.
Length = 936
Score = 39.5 bits (88), Expect = 0.004
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 3 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKD 62
+ ED+ + P E+L +F+FLP K L C V R+ + ++ H +W +
Sbjct: 154 EEEDQQDHINRLPEELLLKVFSFLPDKSLLACSSVSYRFNQISNS----HEVWKEL---- 205
Query: 63 FKNVYKFAHRLSRPQITWHELYRSLTLWR 91
+ N+Y + L P E +R + WR
Sbjct: 206 YCNLYDYRIPLFHPSHAKFE-FREQSRWR 233
>U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical
protein K02A6.3a protein.
Length = 483
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 12 ESFPTEILSHIFTFLPAKQLTKCREVCIRWK 42
++ P E+L IF LP K +C +VC +W+
Sbjct: 8 KTMPIELLEDIFQRLPVKNKGRCSQVCRQWQ 38
>U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic
protein protein 1 protein.
Length = 332
Score = 32.3 bits (70), Expect = 0.68
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF-KNVYKFAHRL 73
P ++L+ IF +LP K L C W N + + +W GK + L
Sbjct: 86 PLKVLNQIFQYLPLKDLRSAMLTCHSWNNALSMEDS--DIWQYLLGKKLPEAAVSDPFLL 143
Query: 74 SRPQITWHELYRSLTLWRQLHLARQHYDEFASATT----VASEIQGFRYLRNGTAGVH 127
+ +L W ++R +Y T VA G R R + GVH
Sbjct: 144 AELGSAKKKLRAWYFAWNTSDISRNNYIRTNGFTVHRQPVAQSTDGVRGKRGISKGVH 201
>U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical
protein C07D10.1 protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.68
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 22 IFTFLPAKQLTKCREVCIRWKNVIDTLNKYHS 53
+F + A L +CR VC +W + I LN+Y S
Sbjct: 16 VFKSVDAATLQRCRRVCTKWNSEILRLNEYTS 47
>AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.4 protein.
Length = 688
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 243 LNIITLERNIYTL-IGHELQLQCTITEESNLLHEFNKYNLFDHFDWRVYIQWMFALCFKL 301
L+ + E N+ ++ +G L+L+ + SN L +F + D R+Y +K
Sbjct: 580 LHFVVAEVNLESISMGDVLELKNVFQQNSNKLKKFKAFFENSDIDERIYDDQFLGFPYKR 639
Query: 302 PEGPLRDIVTV 312
PE P ++ +V
Sbjct: 640 PENPSTNLPSV 650
>AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical
protein T28B4.1a protein.
Length = 535
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 42
+E P ++L IF +L KQ+ + VC RW+
Sbjct: 49 IEKLPDKVLRDIFQYLSPKQINQVGLVCKRWR 80
>AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical
protein T28B4.1b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 42
+E P ++L IF +L KQ+ + VC RW+
Sbjct: 32 IEKLPDKVLRDIFQYLSPKQINQVGLVCKRWR 63
>AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical
protein T28B4.1c protein.
Length = 552
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 42
+E P ++L IF +L KQ+ + VC RW+
Sbjct: 66 IEKLPDKVLRDIFQYLSPKQINQVGLVCKRWR 97
>AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical
protein C39B5.7 protein.
Length = 291
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNVID-TLNKYHSLWYKFCGKDF 63
P EI I + LPA L CR+VC ++ +D + N + + + C DF
Sbjct: 2 PLEISDEILSKLPAMDLLSCRKVCKSLRSAVDQSGNHLNRISFDIC-NDF 50
>AC090999-7|AAK26142.1| 438|Caenorhabditis elegans Hypothetical
protein Y82E9BR.12 protein.
Length = 438
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVC 38
L PTEIL+ +F L K CR+VC
Sbjct: 105 LSDMPTEILNQVFEKLEPKDRLACRKVC 132
>AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical
protein Y54F10BM.10 protein.
Length = 302
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 1 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVC 38
MSD T L+ P EI + +F L K+L CR+VC
Sbjct: 1 MSDKRVSPTLLD-LPLEIANKVFEELTLKELLNCRKVC 37
>U51993-1|AAB36851.2| 377|Caenorhabditis elegans Hypothetical
protein F56F10.2 protein.
Length = 377
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 8 VTPL-ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
V P+ + F + IL+ +F +L L C+ VC +W I
Sbjct: 95 VEPIAQDFESHILADVFKYLDIDDLLNCKLVCWKWNATI 133
>AC087081-15|AAK66031.1| 267|Caenorhabditis elegans Hypothetical
protein Y82E9BL.4 protein.
Length = 267
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 9 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY 51
+PL + P +I++ +F L L CR VC + +D Y
Sbjct: 24 SPLLNMPLDIVNQVFEKLSPMDLWTCRNVCQSLRRAVDGFGIY 66
>Z81584-7|CAE17905.1| 202|Caenorhabditis elegans Hypothetical
protein T04C12.7 protein.
Length = 202
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 333 SPFTNGELDFMNHMPLKQYNFMERSDCPVLSVCPIIEIEVMEIVDGH 379
+P T+ E D N PLK + + C + PI + M+I D H
Sbjct: 96 APQTSTETDIKNATPLKMHRISRFTFCCLCMCIPIGILWTMQIYDNH 142
>L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical
protein C02F5.7a protein.
Length = 461
Score = 29.5 bits (63), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRW 41
P E+L +F+FL K L + +VC W
Sbjct: 61 PKEVLLKVFSFLDTKALCRSAQVCRSW 87
>L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical
protein C02F5.7b protein.
Length = 466
Score = 29.5 bits (63), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRW 41
P E+L +F+FL K L + +VC W
Sbjct: 61 PKEVLLKVFSFLDTKALCRSAQVCRSW 87
>U23515-1|AAK21454.2| 511|Caenorhabditis elegans Hypothetical
protein R144.5 protein.
Length = 511
Score = 28.7 bits (61), Expect = 8.3
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 168 NLHLFITRKLIRSPKHIASISHDNCKLFYVIDNVVYYVSLNESIYAVYLSDKELKSHFLV 227
N LFI R + K S+ K +Y ++ +S V+ + LKS FL
Sbjct: 140 NRRLFI-RHVTDIVKFSDSVDETTLKQYYTLNGDSQKLSDGSRFNVVFEQTRLLKSKFLT 198
Query: 228 QSTEGI-----ICLGHTGKNLN 244
+ + + IC GH +N+N
Sbjct: 199 KRFQEMAFDDDICCGHNAENMN 220
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,504
Number of Sequences: 27539
Number of extensions: 482236
Number of successful extensions: 1322
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1305
Number of HSP's gapped (non-prelim): 19
length of query: 427
length of database: 12,573,161
effective HSP length: 83
effective length of query: 344
effective length of database: 10,287,424
effective search space: 3538873856
effective search space used: 3538873856
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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