Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001677-TA|BGIBMGA001677-PA|IPR001810|Cyclin-like F-box
(427 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40050.1 68418.m04858 F-box family protein contains F-box dom... 36 0.039
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 36 0.039
At5g39250.1 68418.m04754 F-box family protein ; similar to SKP... 36 0.068
At1g47810.1 68414.m05319 F-box family protein contains F-box dom... 35 0.090
At3g18330.1 68416.m02332 F-box family protein contains Pfam PF00... 34 0.16
At1g66310.1 68414.m07530 F-box family protein contains F-box dom... 34 0.21
At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein si... 34 0.21
At5g47300.1 68418.m05831 F-box family protein contains Pfam PF00... 33 0.28
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 33 0.28
At3g17270.1 68416.m02208 F-box family protein 33 0.28
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 33 0.28
At2g43260.1 68415.m05377 F-box family protein / S locus-related ... 33 0.28
At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1... 33 0.36
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 33 0.48
At3g23880.1 68416.m03001 F-box family protein contains F-box dom... 33 0.48
At5g38396.1 68418.m04641 F-box family protein contains F-box dom... 32 0.64
At3g58920.1 68416.m06566 F-box family protein contains F-box dom... 32 0.64
At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00... 32 0.64
At1g33020.1 68414.m04066 F-box family protein 32 0.64
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 32 0.84
At3g58820.1 68416.m06556 F-box family protein contains F-box dom... 32 0.84
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 32 0.84
At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F... 32 0.84
At1g51290.1 68414.m05768 F-box family protein (FBX10) contains P... 32 0.84
At5g38390.1 68418.m04639 F-box family protein contains F-box dom... 31 1.1
At3g58950.1 68416.m06569 F-box family protein contains F-box dom... 31 1.1
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 31 1.1
At5g02910.1 68418.m00234 F-box family protein similar to ribosom... 31 1.5
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 31 1.5
At3g58980.1 68416.m06574 F-box family protein contains two F-box... 31 1.5
At3g08750.1 68416.m01017 F-box family protein contains F-box dom... 31 1.5
At1g78750.1 68414.m09178 F-box family protein contains F-box dom... 31 1.5
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 31 1.5
At3g13820.1 68416.m01745 F-box family protein contains Pfam PF00... 31 1.9
At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00... 31 1.9
At1g76920.1 68414.m08954 F-box family protein (FBX3) contains si... 31 1.9
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof... 31 1.9
At1g30920.1 68414.m03782 F-box family protein contains F-box dom... 31 1.9
At4g02030.1 68417.m00273 expressed protein 30 2.6
At2g14710.1 68415.m01654 F-box family protein contains Pfam prof... 30 2.6
At4g19940.1 68417.m02921 F-box family protein contains Pfam PF00... 30 3.4
At4g14103.1 68417.m02177 F-box family protein contains F-box dom... 30 3.4
At4g13960.1 68417.m02159 F-box family protein contains F-box dom... 30 3.4
At4g09190.1 68417.m01520 F-box family protein contains Pfam PF00... 30 3.4
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 30 3.4
At3g59200.1 68416.m06600 F-box family protein contains F-box dom... 30 3.4
At3g59000.1 68416.m06576 F-box family protein contains F-box dom... 30 3.4
At3g58900.1 68416.m06564 F-box family protein contains F-box dom... 30 3.4
At3g57580.1 68416.m06411 F-box family protein contains Pfam PF00... 30 3.4
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s... 30 3.4
At3g49040.1 68416.m05357 F-box family protein contains F-box dom... 30 3.4
At3g19410.1 68416.m02462 F-box family protein contains Pfam PF00... 30 3.4
At3g17480.1 68416.m02233 F-box family protein contains F-box dom... 30 3.4
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp... 30 3.4
At1g57790.1 68414.m06557 F-box family protein contains Pfam PF00... 30 3.4
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00... 30 3.4
At1g16940.1 68414.m02055 F-box family protein contains F-box dom... 30 3.4
At5g22610.1 68418.m02642 F-box family protein contains F-box dom... 29 4.5
At5g02930.1 68418.m00236 F-box family protein low similarity to ... 29 4.5
At1g15680.1 68414.m01882 F-box family protein contains Pfam:PF00... 29 4.5
At1g13200.1 68414.m01531 F-box family protein contains F-box dom... 29 4.5
At5g45360.1 68418.m05569 F-box family protein similar to SKP1 i... 29 5.9
At5g41840.1 68418.m05095 F-box family protein contains F-box dom... 29 5.9
At5g25860.1 68418.m03068 F-box family protein contains F-box dom... 29 5.9
At3g44120.1 68416.m04730 F-box family protein contains Pfam:PF00... 29 5.9
At3g17280.1 68416.m02209 F-box family protein contains Pfam PF00... 29 5.9
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 29 5.9
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con... 29 5.9
At1g57690.1 68414.m06547 F-box family protein contains F-box dom... 29 5.9
At1g21990.1 68414.m02751 F-box family protein contains F-box dom... 29 5.9
At1g19070.1 68414.m02373 F-box family protein similar to putativ... 29 5.9
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 29 7.8
At5g54670.1 68418.m06807 kinesin-like protein C (KATC) 29 7.8
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00... 29 7.8
At5g18160.1 68418.m02132 F-box family protein contains Pfam PF00... 29 7.8
At5g12940.1 68418.m01484 leucine-rich repeat family protein cont... 29 7.8
At5g03100.1 68418.m00258 F-box family protein contains F-box dom... 29 7.8
At3g23970.1 68416.m03011 F-box family protein contains Pfam:PF00... 29 7.8
At3g17540.1 68416.m02240 F-box family protein similar to hypothe... 29 7.8
At3g17530.1 68416.m02239 F-box family protein contains Pfam prof... 29 7.8
At3g16555.1 68416.m02115 F-box family protein contains F-box dom... 29 7.8
At2g29910.2 68415.m03633 F-box family protein contains F-box dom... 29 7.8
At2g29910.1 68415.m03632 F-box family protein contains F-box dom... 29 7.8
At2g03610.1 68415.m00321 F-box family protein contains F-box dom... 29 7.8
At2g02030.1 68415.m00138 F-box family protein contains F-box dom... 29 7.8
At1g47390.1 68414.m05246 F-box family protein contains F-box dom... 29 7.8
At1g22040.1 68414.m02757 kelch repeat-containing F-box family pr... 29 7.8
>At5g40050.1 68418.m04858 F-box family protein contains F-box
domain Pfam:PF00646
Length = 415
Score = 36.3 bits (80), Expect = 0.039
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 2 SDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLN 49
S + D ++PL P E+LSHI +FLP K+ + RW+ + +N
Sbjct: 10 SGSIDSISPL---PDELLSHILSFLPTKRAASTSILSKRWRTLFPLMN 54
>At2g42720.1 68415.m05291 F-box family protein contains F-box
domain Pfam:PF00646
Length = 443
Score = 36.3 bits (80), Expect = 0.039
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 52
+ S P EIL HI +FL K+ + RWKNV + H
Sbjct: 4 ISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSLH 45
>At5g39250.1 68418.m04754 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 252
Score = 35.5 bits (78), Expect = 0.068
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 14 FPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRL 73
F E+L ++F L + L C VC +W+++ + W C K + +V K R
Sbjct: 2 FSEEVLKNVFPLLEGEDLASCMGVCKQWRDIA----RDDFYWKCQCAKKWPSVCK---RH 54
Query: 74 SRPQITWHELYRSLT 88
P T++++Y++ +
Sbjct: 55 KPPTETYYKMYQTFS 69
>At1g47810.1 68414.m05319 F-box family protein contains F-box
domain Pfam:PF00646
Length = 351
Score = 35.1 bits (77), Expect = 0.090
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 1 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFC- 59
M+D E + L+ P ++L IF LPAK L + V W +I + S ++
Sbjct: 1 MADTEKSLQSLDPIPVDVLFEIFLNLPAKFLARFVCVSKLWAKIIRNQDFIRSFSFRSFR 60
Query: 60 -GKDFKNVYKFAHRLSRPQITWHELYRS 86
K + ++ F +++ Q W+ +S
Sbjct: 61 ENKQHRLLFAFKNQIKGYQENWYFFSKS 88
>At3g18330.1 68416.m02332 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640:
F-box protein interaction domain
Length = 376
Score = 34.3 bits (75), Expect = 0.16
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 10 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF 63
P+ + P E++ I +F+PA L + C W +I ++ Y K+F
Sbjct: 2 PMPNLPKELVEEILSFVPATYLKRLSATCKPWNRLIHNDKRFARKHYDNAAKEF 55
>At1g66310.1 68414.m07530 F-box family protein contains F-box
domain Pfam:PF00646
Length = 442
Score = 33.9 bits (74), Expect = 0.21
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 4 NEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
++DEV L P +L HI LP K + K + +W+N+
Sbjct: 14 SDDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNL 54
>At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 408
Score = 33.9 bits (74), Expect = 0.21
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 149 YGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIASISHDNCKLFYVIDNVVYYVSLN 208
YG + D VL + S+LH+ TR +P+ + S ++ N +LF ++N + SL
Sbjct: 40 YGQVGDNLPPPDKVLQLLSSLHINKTRIYDTNPRVLTSFANSNIELFVTVENEM-LPSLV 98
Query: 209 ESIYAVYLSDKELKSHFLVQSTEGI 233
+ A+ +K +F GI
Sbjct: 99 DPQQALQWVTTRIKPYFPATKIGGI 123
>At5g47300.1 68418.m05831 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(emb|CAB62106.1)
Length = 416
Score = 33.5 bits (73), Expect = 0.28
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFA 70
L P ++L I +PA L + R C +W N+ + ++ KDF+N+
Sbjct: 43 LSDLPGDLLEEILCRVPATSLKQLRSTCKQWNNLFNN-GRFTRKHLDKAPKDFQNLMLSD 101
Query: 71 HRLSRPQITWH 81
R+ +++H
Sbjct: 102 SRVFSMSVSFH 112
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat
family protein
Length = 454
Score = 33.5 bits (73), Expect = 0.28
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 9 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTL 48
T +ES +IL IF+FL L C VC W VI L
Sbjct: 21 TSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRL 60
>At3g17270.1 68416.m02208 F-box family protein
Length = 134
Score = 33.5 bits (73), Expect = 0.28
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 8 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRW 41
+T + + P E+ S I + +PAK L K + +C RW
Sbjct: 1 MTTIPNLPDELESEILSRVPAKSLAKWKTICKRW 34
>At3g07870.1 68416.m00962 F-box family protein contains F-box
domain Pfam:PF00646
Length = 417
Score = 33.5 bits (73), Expect = 0.28
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
LES P +I++ IF+ LP + + VC W++V+
Sbjct: 25 LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVL 59
>At2g43260.1 68415.m05377 F-box family protein / S locus-related
weak similarity to S locus F-box (SLF)-S2 protein
[Antirrhinum hispanicum] GI:13161526; contains TIGRFAM
TIGR01640: F-box protein interaction domain
Length = 420
Score = 33.5 bits (73), Expect = 0.28
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
M + E+ ++ P E+L + LP K + KCR V +W++++++
Sbjct: 1 MGEEEENPNSIDILP-ELLEEVLLRLPTKSILKCRIVSKQWRSLLES 46
>At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 269
Score = 33.1 bits (72), Expect = 0.36
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 3 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKD 62
+ E+E + S P +IL HIF+FL L +V W +SLW
Sbjct: 104 NREEEDIDIPSLPQDILIHIFSFLEISSLVSSAQVSRSWNQA----THENSLWQSQFDLH 159
Query: 63 FKNVYKFAHRLSRPQITWHELYR 85
F +K R+ + I W E ++
Sbjct: 160 FN--HKVLIRM-QSDIDWREAFK 179
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]
Length = 527
Score = 32.7 bits (71), Expect = 0.48
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRW 41
P E L+H+F FL A +C VC RW
Sbjct: 47 PDECLAHVFQFLGAGDRKRCSLVCKRW 73
>At3g23880.1 68416.m03001 F-box family protein contains F-box
domain Pfam:PF00646
Length = 364
Score = 32.7 bits (71), Expect = 0.48
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 1 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
M + E+ + P E++ I LP K LT+ + VC W+++I
Sbjct: 1 MDETTREMFSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLI 45
>At5g38396.1 68418.m04641 F-box family protein contains F-box
domain Pfam:PF00646
Length = 462
Score = 32.3 bits (70), Expect = 0.64
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 52
L + P E++ HI +FL K+ + RW+N++ ++ H
Sbjct: 4 LRNIPDELICHILSFLTTKEAALTSVLSKRWRNLLAFVSNLH 45
>At3g58920.1 68416.m06566 F-box family protein contains F-box
domain Pfam:PF00646
Length = 470
Score = 32.3 bits (70), Expect = 0.64
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 50
+ + P EI+ HI +FL AK+ + RW+N+ + K
Sbjct: 4 ISNLPNEIICHIVSFLSAKEAAFASVLSKRWQNLFTIVQK 43
>At3g23950.1 68416.m03008 F-box family protein contains
Pfam:PF00646 F-box domain
Length = 418
Score = 32.3 bits (70), Expect = 0.64
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
+ P E+ + LP K L + R +C WK VID+
Sbjct: 2 NIPPELTFEVLVRLPLKSLARFRSMCKEWKLVIDS 36
>At1g33020.1 68414.m04066 F-box family protein
Length = 548
Score = 32.3 bits (70), Expect = 0.64
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
L+S PT+++ IF+ + K + +CR V WK+++
Sbjct: 7 LDSIPTDLILEIFSRMSTKSIGRCRCVSKLWKSML 41
>At5g38386.1 68418.m04638 F-box family protein contains F-box
domain Pfam:PF00646
Length = 403
Score = 31.9 bits (69), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
L + P E+L HI +FL K+ + RW+N+I
Sbjct: 4 LSNLPDELLCHIMSFLTTKEAALISVLSKRWRNLI 38
>At3g58820.1 68416.m06556 F-box family protein contains F-box
domain Pfam:PF00646
Length = 413
Score = 31.9 bits (69), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
+ S P E+L HI +FL K+ + RW+N+I
Sbjct: 4 VSSLPNELLCHILSFLTTKEAALTSILSKRWRNLI 38
>At1g52650.1 68414.m05945 F-box family protein contains F-box
domain Pfam:PF00646
Length = 465
Score = 31.9 bits (69), Expect = 0.84
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
+ S P +L +IF+FL K+ +C RW+N++
Sbjct: 4 VSSLPEGVLCNIFSFLTTKEAALTSILCKRWRNLL 38
>At1g51320.1 68414.m05771 F-box family protein (FBX11) contains
F-box domain PF:00646
Length = 375
Score = 31.9 bits (69), Expect = 0.84
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWY-----KFCGKDFKNVY 67
+ P E++ I +P + L K R VC +W ++ D NK+ + + + + +Y
Sbjct: 5 NLPWELVEEILCRVPPQSLVKFRTVCKQWNSLFDD-NKFVNDHFVQSQPQLIFRTESKIY 63
Query: 68 KFAHRLSRPQITWHEL 83
A P+I HEL
Sbjct: 64 SVAVNFKGPRIEVHEL 79
>At1g51290.1 68414.m05768 F-box family protein (FBX10) contains
Pfam F-box domain PF:00646; similar to F-box protein
family, AtFBX9 (GP:20197985) {Arabidopsis thaliana}
Length = 377
Score = 31.9 bits (69), Expect = 0.84
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY---HSLWYK--FCGKDFKNVY 67
+ P E++ I +P + L + R VC +W ++ D NK+ H + + F + +Y
Sbjct: 5 NLPWELVEEILYRVPPQSLARFRTVCKQWNSLFDD-NKFVNDHLVRSRPQFMFRTDSKMY 63
Query: 68 KFAHRLSRPQITWHEL 83
A S P I HEL
Sbjct: 64 SVAVNFSGPWIEVHEL 79
>At5g38390.1 68418.m04639 F-box family protein contains F-box
domain Pfam:PF00646
Length = 456
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
L + P E+L HI +FL K+ + RW+N+I
Sbjct: 4 LSNLPYELLCHILSFLTTKEAALTSVLSKRWRNLI 38
>At3g58950.1 68416.m06569 F-box family protein contains F-box
domain Pfam:PF00646
Length = 417
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKN 43
S P E+L HI +FL K+ V RW+N
Sbjct: 6 SLPDEVLCHILSFLTTKEAALASVVSKRWRN 36
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY 51
S P E L+ +F FL + +C VC RW +++ N+Y
Sbjct: 42 SLPDECLALVFQFLNSGNRKRCALVCRRWM-IVEGQNRY 79
>At5g02910.1 68418.m00234 F-box family protein similar to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain
Pfam:PF00646
Length = 458
Score = 31.1 bits (67), Expect = 1.5
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 3 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKD 62
D+ D + + S P EIL HI + +P K + + RW+ V ++ SL D
Sbjct: 5 DSIDGMDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYV---WSETPSLSIDCRRAD 61
Query: 63 FKNVYKFAHRLSRPQITWHELYRSL 87
++ K S P+IT L+ +L
Sbjct: 62 PNSIDKTLSFFSAPKITSFHLHTTL 86
>At3g61590.1 68416.m06898 F-box family protein contains weak hit
to Pfam PF00646: F-box domain; stamina pistilloidia
(Stp) - Pisum sativum, EMBL:AF004843
Length = 411
Score = 31.1 bits (67), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 2 SDNEDEVTPLES---FPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
SD+E +V P ++L I +FLP + + VC RW ++ +
Sbjct: 28 SDDEAKVETFSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSS 76
>At3g58980.1 68416.m06574 F-box family protein contains two F-box
domains Pfam:PF00646
Length = 594
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 50
+ + P EI+ HI +FL AK+ + RW+N+ + K
Sbjct: 4 ISNLPNEIICHIVSFLSAKEAAFASILSKRWRNLFTIVIK 43
>At3g08750.1 68416.m01017 F-box family protein contains F-box
domain Pfam:PF00646
Length = 369
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
L S P E++ I +PA+ L + + C +W N+I
Sbjct: 9 LPSLPFELIEEILYKIPAESLIRFKSTCKKWYNLI 43
>At1g78750.1 68414.m09178 F-box family protein contains F-box
domain Pfam:PF00646
Length = 458
Score = 31.1 bits (67), Expect = 1.5
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 7 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNV 66
EV + + P +L + +LP K + K + RW+N+ + ++ +C +N
Sbjct: 16 EVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFN---LSYCDFHVRNT 72
Query: 67 YKFAH 71
+ + H
Sbjct: 73 FSYDH 77
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 4 NEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
NE V S P +++ IF LP K + + + + +W++ I++
Sbjct: 61 NEKAVFAPSSLPNDVVEEIFLRLPVKAIIQLKSLSKQWRSTIES 104
>At3g13820.1 68416.m01745 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640:
F-box protein interaction domain
Length = 415
Score = 30.7 bits (66), Expect = 1.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 8 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
+T + + P E+L I + P L R C +W N+
Sbjct: 1 MTTMSNLPAEVLEEILSRTPVTSLRTMRSTCKKWNNL 37
>At2g07140.1 68415.m00816 F-box family protein contains
Pfam:PF00646 F-box domain ; contains TIGRFAM TIGR01640:
F-box protein interaction domain ; contains TIGRFAM
TIGR01640: F-box protein interaction domain
Length = 384
Score = 30.7 bits (66), Expect = 1.9
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNV-YKF 69
L P +++ I +F+PA L + R C W + ++ + + K F+ +
Sbjct: 3 LPELPKDLVEEILSFVPATSLKRLRSTCKGWNRLFKDDKRFTRIHTEKAAKQFQPLTLTK 62
Query: 70 AHRLSRPQITWHELYRSLTLWRQLHLARQH 99
+R+ + H SL + ++ L H
Sbjct: 63 NYRICPINVNLHGTTPSLEVKNEVSLLDPH 92
>At1g76920.1 68414.m08954 F-box family protein (FBX3) contains
similarity to stamina pistilloidia GI:4101570, the pea
ortholog of Fim and UFO from [Pisum sativum]
Length = 374
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 7 EVTPLESFPTEILSHIFTFLPAKQLTKCREVC 38
E +P+ P + L IF+ LP + + CR VC
Sbjct: 2 ESSPVNCLPPDSLHQIFSSLPIRDIMICRSVC 33
>At1g32660.1 68414.m04028 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 446
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 3 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
D L+S P ++ I T +PAK L K R V W ++I
Sbjct: 52 DTNPSKLELDSLPLDLKMAILTRIPAKSLMKLRCVSKMWSSII 94
>At1g30920.1 68414.m03782 F-box family protein contains F-box
domain Pfam:PF00646
Length = 400
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 4 NEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
N +E T +S P +++ I + LP+K + +CR V W+++I
Sbjct: 2 NSEENT--DSIPIDLILDILSRLPSKSIARCRCVSKLWESMI 41
>At4g02030.1 68417.m00273 expressed protein
Length = 694
Score = 30.3 bits (65), Expect = 2.6
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 136 DLDTLQRSIRAVIYGDYNRYVETDDTVLLMNSNL 169
++ L ++ ++Y +YN+++ DT+ M SN+
Sbjct: 76 EIKNLDTDLQMLVYENYNKFISATDTIKRMKSNI 109
>At2g14710.1 68415.m01654 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 362
Score = 30.3 bits (65), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVID--TLNKYHSLWYKF 58
L++ P E++ I + +P K L + R V +W + D T H + ++F
Sbjct: 4 LKNLPWELIEEILSRVPPKSLVRFRTVSKQWNALFDDKTFINNHKMTFRF 53
>At4g19940.1 68417.m02921 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640:
F-box protein interaction domain;similar to F-box
protein Fbx8 (GI:6164735) [Homo
sapiens]|8737673|gb|AV566223.1|AV566223
Length = 411
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 10 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLN 49
P+ P +++ I T LPAK L + + V W ++I + N
Sbjct: 31 PIPEIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLICSRN 70
>At4g14103.1 68417.m02177 F-box family protein contains F-box
domain Pfam:PF00646
Length = 381
Score = 29.9 bits (64), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 42
+ S P +I SHI +FLP K+ + +W+
Sbjct: 10 ISSLPDDISSHILSFLPTKEAASTSVLSKKWR 41
>At4g13960.1 68417.m02159 F-box family protein contains F-box
domain Pfam:PF00646
Length = 434
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
+ S P E+L HI +FL K+ + RW+N+
Sbjct: 4 VSSLPDEVLYHILSFLTTKEAALTSILSKRWRNL 37
>At4g09190.1 68417.m01520 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to Probable
disease resistance RPP8-like protein 2
(Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
Length = 383
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 12 ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
E P +++ I + LPAK + + R V W ++I T
Sbjct: 20 EHIPLDLIVEIVSSLPAKSIVRFRSVSKLWSSIITT 55
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
+ + P E LS IF L L +C VC RW +
Sbjct: 74 ISNLPDECLSLIFQSLTCADLKRCSLVCRRWLTI 107
>At3g59200.1 68416.m06600 F-box family protein contains F-box
domain Pfam:PF00646
Length = 520
Score = 29.9 bits (64), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 42
+ S P ++SHI +FLP K+ + +W+
Sbjct: 9 ISSLPNPVVSHILSFLPTKEAASTSVLSKKWR 40
>At3g59000.1 68416.m06576 F-box family protein contains F-box
domain Pfam:PF00646
Length = 491
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
S P E+LSHI +FL K+ + RW+ +I
Sbjct: 6 SLPDELLSHILSFLTTKEAALTSLLSKRWRYLI 38
>At3g58900.1 68416.m06564 F-box family protein contains F-box
domain Pfam:PF00646
Length = 327
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
S P E+L HI +FL K+ + RW+N+
Sbjct: 6 SLPNELLYHILSFLSTKEAALTSVLSKRWRNL 37
>At3g57580.1 68416.m06411 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to F-box
protein family, AtFBX8 (GI:20197464) [Arabidopsis
thaliana]
Length = 408
Score = 29.9 bits (64), Expect = 3.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
S PT+++ IF LP+K + + R + +W +++
Sbjct: 9 SLPTDLIREIFARLPSKSVARFRTLSKQWASIL 41
>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
similarity to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]; contains Pfam profile:
PF00646 F-box domain
Length = 522
Score = 29.9 bits (64), Expect = 3.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY 51
+ P + L+HIF FL A +C V RW ++D N++
Sbjct: 43 NLPDDCLAHIFQFLSAGDRKRCSLVSKRWL-LVDGQNRH 80
>At3g49040.1 68416.m05357 F-box family protein contains F-box
domain Pfam:PF00646
Length = 415
Score = 29.9 bits (64), Expect = 3.4
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 3 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLN--KYHSLWYKFCG 60
+NED ++ L +L HI + LP K + + RW++V T+ K+ S +++
Sbjct: 8 ENEDRISELHE---ALLVHIMSSLPTKTVVATSVLSKRWRHVWKTVQNLKFVSKYHQTFS 64
Query: 61 KDFKNVYKF 69
+D VY+F
Sbjct: 65 ED---VYRF 70
>At3g19410.1 68416.m02462 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640:
F-box protein interaction domain; similar to
hypothetical protein GB:AAC69119 from [Arabidopsis
thaliana]
Length = 373
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/77 (19%), Positives = 27/77 (35%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFA 70
+ P +++ I ++PA L + R C W + ++ Y K F +
Sbjct: 3 IPELPKDLIEEILCYVPATYLKRLRSTCKGWNRLFKDDRRFAKKHYDKAAKQFLPLMSTN 62
Query: 71 HRLSRPQITWHELYRSL 87
L + H SL
Sbjct: 63 EELCAMSVNLHGTIPSL 79
>At3g17480.1 68416.m02233 F-box family protein contains F-box
domain Pfam:PF00646
Length = 373
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 9 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYK 68
+P+ +++ I + +PA L + R C +W +++ ++ + K++ ++
Sbjct: 6 SPMSVLTEDLVEDILSRVPATSLVRLRSTCKQWNAILND-RRFIKKHFDTAEKEYLDMLL 64
Query: 69 FAHRLSRPQITWHELY----RSLTLWRQLHL 95
+ R+S + H L+ S+ L R+L+L
Sbjct: 65 RSLRVSSMSVNLHGLHDNIDPSIELKRELNL 95
>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein
similar to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profiles PF00646:
F-box domain, PF00578: AhpC/TSA family
Length = 553
Score = 29.9 bits (64), Expect = 3.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 9 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
T + + PT++L I + +P K + R C RW +
Sbjct: 157 TTMSNLPTDLLEEIISRVPRKYMRAVRLTCKRWNGM 192
>At1g57790.1 68414.m06557 F-box family protein contains Pfam
PF00646: F-box domain
Length = 352
Score = 29.9 bits (64), Expect = 3.4
Identities = 17/69 (24%), Positives = 27/69 (39%)
Query: 1 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCG 60
++ NE + P E+LS + TFL K + VC W ++ +
Sbjct: 3 VNTNEGSKNLWKDLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWLMYF 62
Query: 61 KDFKNVYKF 69
+ KN Y F
Sbjct: 63 PETKNTYDF 71
>At1g47790.1 68414.m05317 F-box family protein contains
Pfam:PF00646 F-box domain
Length = 389
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 10 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
P SFP ++ S I LP K + + R V W ++I
Sbjct: 21 PTSSFPLDLASEILLRLPVKSVVRFRCVSKLWSSII 56
>At1g16940.1 68414.m02055 F-box family protein contains F-box
domain Pfam:PF00646
Length = 434
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTL 48
+ P +L IF LP +++ K +C RW+ V +L
Sbjct: 13 INQLPDSLLCEIFFNLPTEEVVKTSLICRRWRYVWQSL 50
>At5g22610.1 68418.m02642 F-box family protein contains F-box
domain Pfam:PF00646
Length = 472
Score = 29.5 bits (63), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
+ P +LS I ++LP K + + + RWK+V
Sbjct: 20 ISKLPEVLLSQILSYLPTKDIVRTSVLSKRWKSV 53
>At5g02930.1 68418.m00236 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain
Pfam:PF00646
Length = 469
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 8 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK 61
V + P +L HIF+++P + + + RW++V W K K
Sbjct: 27 VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPK 80
>At1g15680.1 68414.m01882 F-box family protein contains
Pfam:PF00646 F-box domain
Length = 410
Score = 29.5 bits (63), Expect = 4.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
P E+L+ I LP +T+ + VC W+++I++
Sbjct: 20 PEELLAEIVARLPFISITRFKSVCKGWRSLIES 52
>At1g13200.1 68414.m01531 F-box family protein contains F-box
domain Pfam:PF00646; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 435
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 4 NEDEVTPL-ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
NE V + S P ++L IF P K L + + + +W++ I++
Sbjct: 32 NEKRVLMVPSSLPNDVLEEIFLRFPVKALIRLKSLSKQWRSTIES 76
>At5g45360.1 68418.m05569 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 316
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVC 38
PTE+ HI FL ++ L C VC
Sbjct: 75 PTELFRHILKFLSSEDLVSCSLVC 98
>At5g41840.1 68418.m05095 F-box family protein contains F-box
domain Pfam:PF00646
Length = 540
Score = 29.1 bits (62), Expect = 5.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
+ P ++ HI +FLP K+ + RWK ++
Sbjct: 16 ISGLPDALICHILSFLPTKEAASTTVLAKRWKPLL 50
>At5g25860.1 68418.m03068 F-box family protein contains F-box
domain Pfam:PF00646
Length = 448
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
P EIL+ I ++LP K+ + RW+N+
Sbjct: 18 PDEILAKILSYLPTKRAVSTSLISKRWRNL 47
>At3g44120.1 68416.m04730 F-box family protein contains
Pfam:PF00646 F-box domain ; contains TIGRFAM TIGR01640:
F-box protein interaction domain ; contains TIGRFAM
TIGR01640: F-box protein interaction domain
Length = 384
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNV-YKF 69
L P +++ I F+PA L + R C W + ++ + K F+ +
Sbjct: 3 LPELPKDLVEEILCFVPATSLKRLRSSCKEWNRLFKDDKRFARKHIEKAAKQFQPLTLTK 62
Query: 70 AHRLSRPQITWHELYRSLTLWRQLHLARQH 99
+R+ + H SL + ++ L H
Sbjct: 63 NYRICPINVNLHGTTPSLEVKNEVSLVDPH 92
>At3g17280.1 68416.m02209 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640:
F-box protein interaction domain
Length = 386
Score = 29.1 bits (62), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 8 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRW 41
+T + P ++L I + LP K + K + C +W
Sbjct: 1 MTTISDLPYDLLPEILSRLPTKSIPKLKTTCKKW 34
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 3 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
+ E E T +E+L IF LP K + K + V +W++++++
Sbjct: 388 EEERENTNSIYIVSELLEEIFLGLPLKSILKFKTVSKQWRSILES 432
>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
contains Pfam PF00646: F-box domain; contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction
domain; weakly similar to self-incompatibility (S-)
locus F-box (GI:29420811) [Prunus mume]
Length = 391
Score = 29.1 bits (62), Expect = 5.9
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
++ P +++ HI L K L C+ V +W++ I
Sbjct: 1 MDLLPYDVVEHILERLDVKSLLNCKSVSKQWRSTI 35
>At1g57690.1 68414.m06547 F-box family protein contains F-box
domain Pfam:PF00646
Length = 330
Score = 29.1 bits (62), Expect = 5.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 7 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 50
EV + S P IL HI K + + RW++ D +NK
Sbjct: 24 EVDIISSLPDVILQHILFSFQTKYAIRTSVLSKRWRHEADAINK 67
>At1g21990.1 68414.m02751 F-box family protein contains F-box
domain Pfam:PF00646
Length = 465
Score = 29.1 bits (62), Expect = 5.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 50
P EIL I +FLP + RW+N++ ++K
Sbjct: 15 PDEILGKILSFLPTHHAATTSVLSKRWRNLLPLVDK 50
>At1g19070.1 68414.m02373 F-box family protein similar to putative
non-LTR retroelement reverse transcriptase GI:3738337
from [Arabidopsis thaliana] ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 83
Score = 29.1 bits (62), Expect = 5.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 17 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 52
EI+ HI +FLP K+ + RW+N+ H
Sbjct: 10 EIICHILSFLPTKESALTSVLSKRWRNLFALTPNLH 45
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 28.7 bits (61), Expect = 7.8
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSL-----WYKFCGKDFKN 65
LE P E + +F+ K++ K + C+R I+ +KY ++ Y+F +K+
Sbjct: 189 LEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKD 248
Query: 66 VY 67
Y
Sbjct: 249 CY 250
>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
Length = 754
Score = 28.7 bits (61), Expect = 7.8
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 92 QLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSIRAVIYGD 151
Q+ LAR+ ++ A+ ++ E + + AG+ + G DL T + I++V
Sbjct: 139 QVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKAQGDLQTANQRIQSV-NDM 197
Query: 152 YNRYVETDDTVLLMNSNL 169
Y E + ++ L NS L
Sbjct: 198 YKLLQEYNSSLQLYNSKL 215
>At5g49610.1 68418.m06139 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640:
F-box protein interaction domain; similar to unknown
protein (gb|AAF30317.1)
Length = 359
Score = 28.7 bits (61), Expect = 7.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 14 FPTEILSHIFTFLPAKQLTKCREVCIRW 41
FP E++ I LP K L + + VC W
Sbjct: 9 FPDEVILQILARLPVKSLFRFKSVCKSW 36
>At5g18160.1 68418.m02132 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to Probable
disease resistance RPP8-like protein 2
(Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
Length = 379
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 6 DEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
+ ++ S P +I I + LPAK + + R V W ++ T
Sbjct: 26 NHISQSNSIPLDITIEILSRLPAKSIVRSRSVSKLWSSITTT 67
>At5g12940.1 68418.m01484 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 371
Score = 28.7 bits (61), Expect = 7.8
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 323 SDW-GVLRIYHSPFTNGELDFMNHMPLKQYNFMERSDCPVLSVCPIIEIEVMEIVDGHII 381
+DW G+ + S N L F+ H+ L F S ++ ++ ++V+ + D H+
Sbjct: 117 ADWKGISGVIPSCIEN--LPFLRHLDLVGNKF---SGVIPANIGKLLRLKVLNLADNHLY 171
Query: 382 MVAMPKKVAVLTFSHCFKRAASIAMFSNSNLQRVKFL 418
V P +++ SH R +I+ ++ R+K +
Sbjct: 172 GVIPPSITRLVSLSHLDLRNNNISGVIPRDIGRLKMV 208
>At5g03100.1 68418.m00258 F-box family protein contains F-box
domain Pfam:PF00646
Length = 307
Score = 28.7 bits (61), Expect = 7.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 44
+ S P EIL HI P K + + RWK+V
Sbjct: 11 ISSLPDEILHHILANTPTKLAIRTSVLSKRWKHV 44
>At3g23970.1 68416.m03011 F-box family protein contains
Pfam:PF00646 F-box domain
Length = 413
Score = 28.7 bits (61), Expect = 7.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 13 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 47
+ P E+ + LP K L + R V WK VID+
Sbjct: 2 NIPPELTFEVLVRLPLKSLARFRSVRKEWKLVIDS 36
>At3g17540.1 68416.m02240 F-box family protein similar to
hypothetical protein GB:AAD18122 from [Arabidopsis
thaliana];contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 396
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRW 41
+ P EI S I + +P K L K C RW
Sbjct: 7 ISDLPHEIESEILSRVPTKSLAKLHTTCKRW 37
>At3g17530.1 68416.m02239 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 388
Score = 28.7 bits (61), Expect = 7.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRW 41
+ P ++ S I + +PAK L K + C RW
Sbjct: 3 ISDLPHDLESEILSRVPAKSLAKWKTTCKRW 33
>At3g16555.1 68416.m02115 F-box family protein contains F-box
domain Pfam:PF00646
Length = 349
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNVID 46
P E+ I + LP + L + R VC RW + D
Sbjct: 5 PWELEEDILSRLPPRSLVQFRSVCKRWNALFD 36
>At2g29910.2 68415.m03633 F-box family protein contains F-box
domain Pfam:PF00646
Length = 335
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 50
+ S P EIL + + LP K+ + RW N+ ++K
Sbjct: 7 ISSLPDEILGKVLSLLPTKRAASTAVLSKRWNNLPALVDK 46
>At2g29910.1 68415.m03632 F-box family protein contains F-box
domain Pfam:PF00646
Length = 352
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 11 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 50
+ S P EIL + + LP K+ + RW N+ ++K
Sbjct: 7 ISSLPDEILGKVLSLLPTKRAASTAVLSKRWNNLPALVDK 46
>At2g03610.1 68415.m00321 F-box family protein contains F-box
domain Pfam:PF00646
Length = 216
Score = 28.7 bits (61), Expect = 7.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 17 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYK 68
++L I L + + + VC W +V T Y S W + G F YK
Sbjct: 28 DLLRPILESLSSIDFHRAKTVCSDWYSVWKTCKGYDSKWNQNSGSIFDMAYK 79
>At2g02030.1 68415.m00138 F-box family protein contains F-box
domain Pfam:PF00646
Length = 334
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 15 PTEILSHIFTFLPAKQLTKCREVCIRWKNVI 45
P EI+ I LP K LT+ + V W+ +I
Sbjct: 40 PNEIVEEILVRLPVKSLTRFQTVSKHWRTLI 70
>At1g47390.1 68414.m05246 F-box family protein contains F-box
domain Pfam:PF00646
Length = 370
Score = 28.7 bits (61), Expect = 7.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 8 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVID 46
+ P E P E++ I + +P + L + R V +W + D
Sbjct: 1 MAPEEKLPCELIEEILSRVPPESLVRFRTVSKKWNALFD 39
>At1g22040.1 68414.m02757 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 475
Score = 28.7 bits (61), Expect = 7.8
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 2 SDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK 61
+D E+ + S P E+ I LP + R V RW++ + T ++ +SL K G+
Sbjct: 35 NDEEECCRLIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVST-SEVYSL-RKELGR 92
Query: 62 DFKNVYKFAHRLSRPQITWHELYRSLTLWRQL 93
+ +Y + ++ W+ L T W++L
Sbjct: 93 TEEWLYVLT-KGHEDKLLWYALDPVSTKWQRL 123
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,173
Number of Sequences: 28952
Number of extensions: 448518
Number of successful extensions: 1475
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 96
length of query: 427
length of database: 12,070,560
effective HSP length: 83
effective length of query: 344
effective length of database: 9,667,544
effective search space: 3325635136
effective search space used: 3325635136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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