Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001676-TA|BGIBMGA001676-PA|undefined
         (416 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    27   0.33 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    27   0.33 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.76 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   5.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   7.1  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 172 VTAIAKEVLEGKKTKRVTIDEPATLVSEHKANDKNLYNFFVDILETTFSAC 222
           VT     +LE K+TK++    P T        + NL++  +   +  FSAC
Sbjct: 297 VTVCELTILEYKRTKKLLYRIPVTKTDSMLIRNINLFSLQLAHQKLEFSAC 347


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 172 VTAIAKEVLEGKKTKRVTIDEPATLVSEHKANDKNLYNFFVDILETTFSAC 222
           VT     +LE K+TK++    P T        + NL++  +   +  FSAC
Sbjct: 122 VTVCELTILEYKRTKKLLYRIPVTKTDSMLIRNINLFSLQLAHQKLEFSAC 172


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 166 KINSNNVTAIAKEVLEGKKTKRVTIDEPATLVSEHKANDKNLYNFFVDILETTFSACDMK 225
           K+ ++    + K    G+K K ++ DE  +   +HK+  K   + F DI      A +++
Sbjct: 47  KVEADEEAPVLKSRSFGRKRKSISSDEENSFQGKHKSRRKAPQS-FEDIQHQRVMA-NVR 104

Query: 226 ESLETNKLKLSESNLGFEIEESVAKKL 252
           E   T  L  + ++L   I    + KL
Sbjct: 105 ERQRTQSLNEAFASLRKSIPTMPSDKL 131


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 166 KINSNNVTAIAKEVLEGKKTKRVTIDE 192
           K+N+NNV +   + + G K K   ++E
Sbjct: 87  KLNNNNVVSSTNQEIRGPKRKTWKVEE 113


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 64  LPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIE-RAKAMNNE 122
           +P +  +RR    F +  L+ L K    TQ+P+     + EE+  +T   E R +   + 
Sbjct: 214 IPLKRKQRRSRTTFTAHQLDELEKAFERTQYPD---IYTREELAQRTKLTEARIQVWFSN 270

Query: 123 KKSKFKSKI 131
           ++++ + +I
Sbjct: 271 RRARLRKQI 279


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 309 LKSTPQSTSNYSRFNKSTKKRMKSDFIDILKREL 342
           L STP+ST +    + ++ K  ++D   ++K+E+
Sbjct: 837 LNSTPRSTPDKREKSPTSDKAQEADGEVVVKKEV 870


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,342
Number of Sequences: 317
Number of extensions: 3581
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 416
length of database: 114,650
effective HSP length: 58
effective length of query: 358
effective length of database: 96,264
effective search space: 34462512
effective search space used: 34462512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)