Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001674-TA|BGIBMGA001674-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(147 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 9e-05
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 42 3e-04
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 41 5e-04
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 40 6e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 40 6e-04
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 40 8e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.003
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 37 0.008
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.010
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 36 0.018
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.031
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 34 0.055
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 33 0.095
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 32 0.17
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 31 0.29
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.67
SB_30082| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 1.2
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 29 1.6
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 2.7
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 28 3.6
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 27 4.7
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 27 4.7
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_3383| Best HMM Match : DnaJ (HMM E-Value=3.8e-40) 27 4.7
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 27 4.7
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 27 6.3
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29) 27 6.3
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 27 6.3
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 8.3
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 44.4 bits (100), Expect = 4e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKV--LSARLSKNPN--KRFAIVQFETASEAKLAMMKM 100
L++ NI ED I FS +G++ L L + K +A+V++ET EA+ A+ +
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 101 NGSEPLNLKISI 112
NG+E L IS+
Sbjct: 355 NGAEMLGQNISV 366
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 43.2 bits (97), Expect = 9e-05
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 40 LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN---PNKRFAIVQFETASEAKLA 96
LD L++ N+P E I FSKHG V RL N K + V++E S A A
Sbjct: 168 LDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTA 227
Query: 97 MMKMNGSEPLNLKISIA 113
++ ++ +E IS+A
Sbjct: 228 VLTLDKTEVKGRTISVA 244
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
++Y+ +P G +ED +R F +G++ L N + V+FE +A A+ + NG
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN----YGFVEFEDDRDADDAVYECNGK 59
Query: 104 EPLNLKISIAH 114
E L +I + H
Sbjct: 60 EMLGERILVEH 70
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETAS 91
EQ + ++YI ++ L ED I++ F GKV+ LSK P +K + +++E
Sbjct: 192 EQEAKKYARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQ 251
Query: 92 EAKLAMMKMN 101
A A+ MN
Sbjct: 252 SANDAIASMN 261
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 40.7 bits (91), Expect = 5e-04
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 40 LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKL 95
L T+LY+ ++ ++E ++A F G V S +L N +K + VQF A AK
Sbjct: 239 LGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKR 298
Query: 96 AMMKMNGSE 104
AM +MNG E
Sbjct: 299 AMEQMNGFE 307
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 40.3 bits (90), Expect = 6e-04
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
TKLY+ N+ R + AF K G++ +++NP FA V++E +A+ A+ +++G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNP-PGFAFVEYEDYRDAEEAVRELDG 62
Query: 103 SEPLNLKISI 112
+ + I +
Sbjct: 63 ANVCDRTIRV 72
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 40.3 bits (90), Expect = 6e-04
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMM 98
TKLY+ ++ R +++D ++ FS +G+V + L + N ++ FA V++ E + A+
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALK 1216
Query: 99 KMNGSEPLNLKISIAHKLYP 118
M+G + +I++ L P
Sbjct: 1217 HMDGGQIDGQEIAVQSVLPP 1236
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL--SKNPN-KRFAIVQFETASE 92
+Q + D T LYI N+P+ E + FSK+GKV+S R+ K+ N K + E+A +
Sbjct: 172 KQQEQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEK 231
Query: 93 AKLAMMKMN 101
+ + N
Sbjct: 232 CEQVIKDFN 240
Score = 29.9 bits (64), Expect = 0.89
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 33 NAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSAR--LSKNPN--KRFAIVQFE 88
+ GE+ +L T LYI + ++D + K+G ++S + L K+ N K + V FE
Sbjct: 91 DTGEE-KLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFE 149
Query: 89 TASEAKLAM 97
+ A+ A+
Sbjct: 150 SPISAQKAV 158
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 41 DHTK---LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAIVQFETASEA 93
D+TK LY+ NIP+ L E R AF +G +++ RL ++ + K V ++ +EA
Sbjct: 128 DNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEA 187
Query: 94 KLAMMKMNGS 103
+ A+ ++G+
Sbjct: 188 QAAISSLSGT 197
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
LY+ NI +++GI A F + G V + + K F V T EA+ A+ +
Sbjct: 277 LYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTL 336
Query: 101 NG 102
NG
Sbjct: 337 NG 338
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMK 99
T +Y+ N + ++ ++ ++ GK++S ++ +P +K F V FET EA+ A+
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 100 MNGSE 104
+NG E
Sbjct: 169 LNGKE 173
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 36.7 bits (81), Expect = 0.008
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP-NKRFAIVQFETASEAKLAMMKMN 101
L++ NI + + ++ AF ++G+V+ + K P N +A VQF S A A KM+
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKMD 308
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGSE 104
+++ + LSE + F ++G+V +++ N+ A+V F++ A +A +M G
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKVVINRVTNQ--ALVSFDSVDSATIAHAQMKGRT 387
Query: 105 PLNLKISI 112
+ ++ +
Sbjct: 388 MFSRRVRV 395
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 36.3 bits (80), Expect = 0.010
Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN---PNKRFAIVQFETASEAKL 95
++ + LYI +P+ + E+ + A F GK++++++ K+ + V+F+ EA+
Sbjct: 109 EIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQT 168
Query: 96 AMMKMNGS--EPLNLKISI 112
A+ +N N+K+++
Sbjct: 169 AIDDLNNKTLPGTNVKLTV 187
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 35.5 bits (78), Expect = 0.018
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 35 GEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETA 90
G++ +L +Y+ +IP G E+ I+ F + G V RLS++ +K +A V+F
Sbjct: 90 GDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACD 149
Query: 91 SEAKLAMMKMN 101
AK+A M+
Sbjct: 150 EVAKIAADTMH 160
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/74 (22%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR--FAIVQFETASEAKLAMM 98
++ LY+ N+ +++ I + F+K KV+ ++ +P + + V+FET ++A+ A
Sbjct: 367 ENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKF 426
Query: 99 KMNGSEPLNLKISI 112
+M+ ++ K+ +
Sbjct: 427 RMDQRTVMDKKLKV 440
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 31 DDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETA 90
DD + QL+ T +Y+ N+P + + ++ FS++G +L ++ + F + E
Sbjct: 604 DDVFHQSSQLN-TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINARGEKR 662
Query: 91 SEAKLAMMKMNGS 103
+ L + +G+
Sbjct: 663 RQRCLTSSRRHGN 675
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 33.9 bits (74), Expect = 0.055
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 44 KLYIINIPRG-LSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
+++I N+ ++ + FS+HGKVL L N F VQFET A A+ K +G
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN----FGFVQFETEKGADEAVAKEHG 102
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 33.1 bits (72), Expect = 0.095
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS- 103
+Y+ N+P +SE ++A F+K+G++ R ++ + V F A A+ +NG+
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRD----YGFVYFAKRESAVQAIDGINGAY 59
Query: 104 -EPLNLKISIA 113
+ L++S+A
Sbjct: 60 IDGCKLEVSLA 70
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLS--KNPNKRFAIVQFETASEAKLAMMKMN 101
++Y+ N+P+ + E + F K+G + L + FA V+FE +A+ A+ +
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRD 321
Query: 102 GSE 104
G E
Sbjct: 322 GHE 324
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 31.9 bits (69), Expect = 0.22
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 19 DFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP 78
D E T+ + A + A + + +++ I GL+E+ ++ F+ G V KN
Sbjct: 86 DIPEQTHAPEDAKEIAKKLIASGGKTVFVSGI--GLTEEILKEEFNHLGHVERVNFEKNR 143
Query: 79 NKRFAIVQFETASEAKLAMMKMNG--SEPLNLKISIAHK 115
++ F V F+T A A+ +MNG + +++++S+A +
Sbjct: 144 SQGF--VTFDTWEAADKAIDEMNGLKVQHVHIRVSMARR 180
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.5 bits (68), Expect = 0.29
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
+++ NIP SE+ ++ FS+ G V+S RL K + +++ A AM +
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 101 NGSE 104
NG E
Sbjct: 87 NGYE 90
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 31.5 bits (68), Expect = 0.29
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 6 RPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSK 65
R +R MR+D N + + D + Q++L + +I + P ++ I F K
Sbjct: 59 RTYKRSAISNMRND-NNYQIQQRRVDRDPEPQIRLSNLANHIGDQPM---KESIFHEFKK 114
Query: 66 HGKVLSARLSKNPNKRFAIVQF---ETASEAKLAMMKMNGSEPLNLKISIAHKLYP 118
G + S L N R+A++ F + A E K A+ + + + + + I + LYP
Sbjct: 115 FGDI-SVHLFGRGNDRYAVLYFRSLDDAKETKRALERRSRTILFDRPLRIEYNLYP 169
Score = 29.9 bits (64), Expect = 0.89
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSA---RLSKNPNKRFAIVQF---ETASEAKLAM 97
L++ N+ G+S +R +F K G VL R ++ +A V+F + A++AK AM
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAM 297
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.3 bits (65), Expect = 0.67
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
++L+I+ P + ++ FS+ G ++ + K N F +F A A+ ++G
Sbjct: 338 SRLFIVCNPAPPPDHVLKDVFSRFGNLIDVWMMKERN--FGYAKFAAKQSADAAIQGLHG 395
Query: 103 SEPLNLKISI 112
+ L +K+ I
Sbjct: 396 HDVLGMKLKI 405
>SB_30082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 29.9 bits (64), Expect = 0.89
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 65 KHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGSE 104
KHGK L A+ NP+ R I Q E +++M +NG E
Sbjct: 170 KHGKQLGAKTIFNPSPR--IEQMEPEMYRSISLMVLNGDE 207
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.9 bits (64), Expect = 0.89
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHG----KVLSARLSKN-------PNKR-FA 83
+ V D K+Y N+P L++D ++A F VL + +N P R F
Sbjct: 43 KMVFADPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFG 102
Query: 84 IVQFETASEAKLAMMKMNGSEPLNLKISIA 113
V F +A+ A+ +NG E + IA
Sbjct: 103 FVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLA 96
TKL++ IP +D +R F++ G++ A + K+ +K + V T+ A+LA
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELA 67
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK 80
E ++ L++IN+P ++ I+ F K G V S L K P K
Sbjct: 35 ESLRPSDKTLFVINVPPYCTKLAIKKLFGKCGGVKSVYLHKQPGK 79
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMM 98
++++I+ R +ED IR+AF ++G + + K+ N+ V+F AS A LA
Sbjct: 24 SRVFIVCSKRHNAED-IRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACE 82
Query: 99 KMNG 102
+M+G
Sbjct: 83 EMDG 86
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKR-FAIVQFETASEAKLAMMKM 100
L++ N+ ++ FS++GKV+ A++ SK P + F +V T+ EA + +
Sbjct: 351 LWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKCIQHL 410
Query: 101 NGSE 104
+ +E
Sbjct: 411 HRTE 414
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 50 IPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAIVQFETASEAKLAMMKMN 101
+P D ++ FS+ GKVL L + + K FA ++FE+ +A+ + N
Sbjct: 95 LPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVL 70
D +++I N+P G+ + + FSK+G +L
Sbjct: 355 DSHQVFIGNLPSGVKDADVNEVFSKYGTIL 384
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
+++YI NI S+ I F G + +++NP FA FE +A+ A+ +++G
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNP-PGFAFCVFEDRRDAEDAVRELDG 60
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSAR 73
+LD T +++ N+P L + ++ FSK+G+V S R
Sbjct: 18 RLDRT-VFVGNLPLTLKKKALKKYFSKYGEVESVR 51
>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 83 AIVQFETASEAKLAMMKMNGSEPLNLKISIAH 114
AI++ + AS +KL + +NG EP KI + H
Sbjct: 307 AIIKGDIASYSKLKIRLVNGKEPYMGKIEVWH 338
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 46 YIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKMN 101
Y+ + + E + AAF G + ++ + + ++ F V+FE A + A+ MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 102 GSE 104
SE
Sbjct: 68 ESE 70
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 52 RGLSEDGIRAAFSKHGKVLSARLSKNPNKRF 82
+G S G+ A +KHGKVL + K P F
Sbjct: 245 KGNSGAGVLAKGAKHGKVLVEKTDKKPISEF 275
>SB_3383| Best HMM Match : DnaJ (HMM E-Value=3.8e-40)
Length = 250
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 47 IINIPRGLSEDGIRAAFSKHGKVLSARLSKNP-NKRFAIVQFETASEA 93
++ +PR SE+ ++ A+ + + L KNP N+ A +F+ SEA
Sbjct: 8 VLGVPRSASEEDVKKAYRR--QALRWHPDKNPTNREHAEEKFKKLSEA 53
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 27.5 bits (58), Expect = 4.7
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS------KNPNKRFAIVQFETASEAKLA 96
++L I N+ +E ++ FS G+V A + +N F VQF +A A
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKA 306
Query: 97 MMKMNGSEPLNLKISI 112
+ +MN + L +++
Sbjct: 307 LEEMNAKKILGRPVAV 322
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 16 MRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSK 65
+R FN +T + Y+ N +Q+ +H K II LSE I+ FS+
Sbjct: 283 LRKIFNRNTIKISYSCMNNTKQIIDNHNK-RIITASAPLSEPHIKLPFSE 331
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 115 KLYPYHDTHRMNVRWAKIYVKSAMA----QRIQVWA 146
K YP H H NVRWA V+ A I VW+
Sbjct: 882 KKYPGHSAHVTNVRWAHDDVRLVSAGGADTSIMVWS 917
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.1 bits (57), Expect = 6.3
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 35 GEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAK 94
G Q+ +LY+ NIP G++E+ + F + K+ A+L+ P Q T E
Sbjct: 555 GSQMTRQARRLYVGNIPFGVTENLMIEFF--NAKMKEAKLNTAPGNPVIAAQINT--EQN 610
Query: 95 LAMMKMNGSE 104
A +++ E
Sbjct: 611 FAFIELRSVE 620
>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
Length = 291
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 65 KHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAHK 115
K+G V +S K AIV++E + A++A+M G+ L IS K
Sbjct: 179 KYGDVTHLLISST-RKGSAIVEYEHVTSARMALMNEKGNADNPLTISWLEK 228
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 27.1 bits (57), Expect = 6.3
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 8 QRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAA-FSKH 66
QR E R ++ + D + DD+ E LY ++ RG+SE GI A+
Sbjct: 141 QRNNENTESRANYGD---DDESGDDSVDESEMKKQNGLYKLDEQRGISEKGIDASMIDAL 197
Query: 67 GKVLSARL--SKNPNKR 81
+ ++ RL + PN R
Sbjct: 198 AETVAQRLKTTMQPNNR 214
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQF-ETASEAKLAMMKMN 101
KL++ +P +E + F++ G+V + K P + F V F A+ +A MN
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK-PFRHFGFVTFASVANCVSIAFENMN 257
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 35 GEQVQLDHTKLYIINIPRGLSEDGIRAAFSK--HGK----VLSARLSKNPNKRFAIVQFE 88
G + + +++L++ +IP+ S+ I FSK +G V + K N+ FA +++E
Sbjct: 225 GVCISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYE 284
Query: 89 TASEAKLAMMKM 100
+ A LA ++
Sbjct: 285 SHQAASLARRRL 296
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 59 IRAAFSKHGKVLSARLSKNPN------KRFAIVQFETASEAKLAMMKMNGSEPLNLKISI 112
+ +++ G + R PN + F V F TA+EA A K+NG+ K+ +
Sbjct: 97 VEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFVTFNTAAEANKAREKLNGTIVDGRKVEV 156
Query: 113 A 113
+
Sbjct: 157 S 157
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
TK+YI ++ S+ I F +G + +++NP FA F+ +A+ A+ +++G
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNP-PGFAFCIFDDRRDAEDAVRELDG 90
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGL 54
FN +D Y+D++ E +++ H K + +P GL
Sbjct: 1425 FNLDPFDA-YSDEDLWEVLEVSHLKAFASGLPEGL 1458
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGL 54
FN +D Y+D++ E +++ H K + +P GL
Sbjct: 994 FNLDPFDA-YSDEDLWEVLEVSHLKAFASGLPEGL 1027
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR 81
+Y+ N+P L+ + F ++GKV+ + ++ R
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETR 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,886,157
Number of Sequences: 59808
Number of extensions: 172974
Number of successful extensions: 479
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 60
length of query: 147
length of database: 16,821,457
effective HSP length: 76
effective length of query: 71
effective length of database: 12,276,049
effective search space: 871599479
effective search space used: 871599479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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