Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001674-TA|BGIBMGA001674-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(147 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 46 8e-06
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 45 2e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 45 2e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 44 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 44 4e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 44 4e-05
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 44 6e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 41 3e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 41 3e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 41 4e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 40 5e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 9e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 9e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 9e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 39 0.001
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 39 0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 39 0.002
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 39 0.002
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 38 0.002
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 38 0.002
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 38 0.002
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.003
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 37 0.005
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.005
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 37 0.006
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.008
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 36 0.008
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.008
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 36 0.008
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.008
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 36 0.011
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 36 0.011
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 36 0.011
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 36 0.011
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 36 0.015
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.015
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 35 0.019
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 35 0.019
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.019
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 35 0.026
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.026
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.026
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.026
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.034
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.034
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 34 0.034
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 34 0.034
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 34 0.034
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 34 0.034
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 34 0.045
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 33 0.078
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.10
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.10
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.10
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 32 0.14
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 32 0.14
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.14
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 0.14
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 32 0.14
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 32 0.18
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 32 0.18
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 32 0.18
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.18
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 0.24
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.31
At4g10610.1 68417.m01735 RNA-binding protein, putative 31 0.31
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 31 0.42
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 31 0.42
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 31 0.42
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 31 0.42
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 31 0.42
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 30 0.55
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 30 0.55
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 30 0.55
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 30 0.73
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 30 0.73
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 30 0.73
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 30 0.73
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 0.73
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 29 0.96
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 0.96
At3g46470.1 68416.m05038 hypothetical protein 29 0.96
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 29 1.3
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 29 1.3
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 1.3
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 29 1.3
At5g23930.1 68418.m02810 mitochondrial transcription termination... 29 1.7
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 28 2.2
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 28 2.2
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 28 2.2
At2g47310.1 68415.m05906 flowering time control protein-related ... 28 2.2
At5g27160.1 68418.m03241 hypothetical protein contains Pfam prof... 28 2.9
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 28 2.9
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 28 2.9
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 28 2.9
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 28 2.9
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 2.9
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 27 3.9
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 3.9
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 3.9
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 27 5.1
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 27 5.1
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 27 5.1
At2g47150.1 68415.m05888 short-chain dehydrogenase/reductase (SD... 27 5.1
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 27 5.1
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa... 27 5.1
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ... 27 5.1
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 27 5.1
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 27 6.8
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 27 6.8
At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI, chlor... 26 9.0
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 26 9.0
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 26 9.0
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 46.4 bits (105), Expect = 8e-06
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 31 DDNAGEQ-VQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN---PNKRFAIVQ 86
DDN G T LYI N+ +SE+ + FS GKV+ + L+K+ ++ FA ++
Sbjct: 4 DDNHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIE 63
Query: 87 FETASEAKLAMMKMNG 102
FE+A A AM+ M+G
Sbjct: 64 FESADSAGRAMLHMDG 79
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFA 83
V+YAD GE +L+H KL++ +P+ +SE +++ FSK+G + ++ ++ +K A
Sbjct: 94 VKYAD---GELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCA 149
Query: 84 IVQFETASEAKLAMMKMNGSEPL 106
+++ET +A AM +NG +
Sbjct: 150 FLKYETKEQAVSAMESINGKHKM 172
Score = 30.7 bits (66), Expect = 0.42
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL 74
L+I NIPR + + AAF G VLSA++
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKV 379
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFA 83
V+YAD GE +L+H KL++ +P+ +SE +++ FSK+G + ++ ++ +K A
Sbjct: 94 VKYAD---GELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCA 149
Query: 84 IVQFETASEAKLAMMKMNGSEPL 106
+++ET +A AM +NG +
Sbjct: 150 FLKYETKEQAVSAMESINGKHKM 172
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
L+I NIPR + + AAF G VLSA++ + +K F V +++ + A+ A+ M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 101 NGSEPLNLKISIAHK 115
NG K+ + K
Sbjct: 411 NGRHLGGKKLKVQLK 425
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 42 HTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMM 98
+T LY+ N+ +SED +R F++ GK++S ++K+ N + +A V F+ +A+ A
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 99 KMNGSE 104
+NG++
Sbjct: 260 TVNGTK 265
Score = 33.9 bits (74), Expect = 0.045
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 28 QYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFAI 84
Q+ + + +++ + +Y+ N+ ++E+ +R FS+ G + S +L K +K F
Sbjct: 289 QFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGF 348
Query: 85 VQFETASEAKLAMMKMNG 102
V F T EA A+ +G
Sbjct: 349 VCFSTPEEAIDAVKTFHG 366
Score = 33.5 bits (73), Expect = 0.059
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLS---ARLSKNPNKRFAIVQFETASEAKLAMMKMN 101
+++ N+P ++ ++ F K G ++S A L ++ + VQFE A A+ +N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 102 GSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKS 136
+ + +I + K D + ++ +Y+K+
Sbjct: 174 STIVADKEIYVG-KFMKKTDRVKPEEKYTNLYMKN 207
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 44.0 bits (99), Expect = 4e-05
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN---PNKRFAIVQFETASEAKLAMMK 99
T +Y+ N+ ++D ++ AF ++GK+ SA + K+ +K F V FE A +A A+
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 100 MNG 102
+NG
Sbjct: 89 LNG 91
Score = 40.7 bits (91), Expect = 4e-04
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFA 83
V+Y + + + LY+ N+ +S++ ++ FS G V S+++ ++PN K
Sbjct: 116 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSG 175
Query: 84 IVQFETASEAKLAMMKMNGS--EPLNLKISIAHK 115
V F T EA AM +++G E L ++IA +
Sbjct: 176 FVAFATPEEATEAMSQLSGKMIESKPLYVAIAQR 209
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 44.0 bits (99), Expect = 4e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP--NKR-FAIVQFETASEAKLAMMK 99
T +Y+ N+P+ + ED +R F K G + SA + ++ N R F V FE A A+ K
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 100 MNG 102
MNG
Sbjct: 289 MNG 291
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMKMN 101
LY+ N+ + ++ ++ FS++G V S+++ NP ++ F V + EA A+ +MN
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 102 G 102
G
Sbjct: 394 G 394
Score = 37.1 bits (82), Expect = 0.005
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMKMN 101
++I N+ + + FS G +LS +++ + +K + VQFE A+ A+ K+N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 102 GSEPLNLKISIAH---KLYPYHDTHRMNVRWAKIYVKS 136
G + ++ + H + D + R+ +YVK+
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKN 235
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 43.6 bits (98), Expect = 6e-05
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMK 99
T +Y+ N+P+ +++D ++ F K+G + SA + K+ ++ F V F + A +A+ K
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 100 MNG 102
MNG
Sbjct: 285 MNG 287
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKL 95
+L + LY+ N+ ++++ ++ FS++G V S ++ N ++ F V + EA L
Sbjct: 324 KLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALL 383
Query: 96 AMMKMNG 102
AM +MNG
Sbjct: 384 AMKEMNG 390
Score = 33.9 bits (74), Expect = 0.045
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMKMN 101
++I N+ + + FS G +LS +++ + +K + VQFE A+ A+ K+N
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 102 GSEPLNLKISIAH 114
G + ++ + H
Sbjct: 194 GMLLNDKQVFVGH 206
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLAMM 98
T LYI IP G E I A FS+ G V R+++N +K F +QFE A++A
Sbjct: 60 TVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
Query: 99 KMN 101
MN
Sbjct: 120 AMN 122
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
L+I NIPR + + A F GKVLSA++ + +K F + +++ + A+ A+ M
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 101 NGSEPLNLKISIAHK 115
NG + K+ + K
Sbjct: 401 NGCQLSGKKLKVQLK 415
Score = 33.1 bits (72), Expect = 0.078
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFAIVQFETASEAKLAMMKM 100
KL++ +P+ +SE +++ FS++G + ++ S +K +++E+ +A AM +
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 101 NG 102
NG
Sbjct: 170 NG 171
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
L+I NIPR + + A F GKVLSA++ + +K F + +++ + A+ A+ M
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 101 NGSEPLNLKISIAHK 115
NG + K+ + K
Sbjct: 392 NGCQLSGKKLKVQLK 406
Score = 40.3 bits (90), Expect = 5e-04
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFA 83
V+YAD GE +L+H KL++ +P+ +SE +++ FS++G + ++ S +K
Sbjct: 88 VKYAD---GELERLEH-KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCL 143
Query: 84 IVQFETASEAKLAMMKMNG 102
+++E+ +A AM +NG
Sbjct: 144 FLKYESKEQAVAAMEALNG 162
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 40.7 bits (91), Expect = 4e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS----KNPNKRFAIVQFETASEAKLAMM 98
+KL+I + +E G+ AFSK G+V+ A++ + +K F V F +A EA+ A+M
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 99 KMNGSE 104
+ NG +
Sbjct: 94 EFNGQQ 99
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.3 bits (90), Expect = 5e-04
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
++I N+ + + + FS G +LS +++ +P+ K + VQ++T A+ A+ K+N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 102 GSEPLNLKISI---AHKLYPYHDTHRMNVRWAKIYVKS 136
G + ++ + HKL D V++ +YVK+
Sbjct: 195 GMLLNDKQVYVGPFVHKL--QRDPSGEKVKFTNVYVKN 230
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMK 99
+ LY+ N+ +++D +R F+ G + S ++ ++P+ + V F T EA A+ +
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 100 MNG 102
MNG
Sbjct: 387 MNG 389
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 32 DNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSA---RLSKNPNKRFAIVQFE 88
D +GE+V+ T +Y+ N+ LS++ + F + G S R + +K F V FE
Sbjct: 215 DPSGEKVKF--TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFE 272
Query: 89 TASEAKLAMMKMNG 102
+ +A A+ +NG
Sbjct: 273 NSDDAARAVDALNG 286
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 34 AGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFET 89
A Q T LY+ ++ +++ + AF++ G+V+S R+ ++ R + V + T
Sbjct: 36 AAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYAT 95
Query: 90 ASEAKLAMMKMN 101
+A A+ ++N
Sbjct: 96 PQDASRALNELN 107
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 39.5 bits (88), Expect = 9e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAK 94
+ D T LYI +P L +DG+ FS G+++ A++ K+ +K + V++ A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 95 LAMMKMNG--SEPLNLKISIAHKLYP 118
A+ MNG E L + IA K P
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 39.5 bits (88), Expect = 9e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAK 94
+ D T LYI +P L +DG+ FS G+++ A++ K+ +K + V++ A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 95 LAMMKMNG--SEPLNLKISIAHKLYP 118
A+ MNG E L + IA K P
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.5 bits (88), Expect = 9e-04
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
LY+ N+ + + FS+ G + S ++ + N K V+F T+ EA AM+KMN
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 102 GSEPLNLKISIAHKLYPYHDTHRMNVR 128
G N I ++ L + H+++++
Sbjct: 285 GKMVGNKPIYVS--LAQCKEQHKLHLQ 309
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 21 NEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN--- 77
N+H + + ++ ++ T +Y+ N+ ++ ++ F + G++ SA + K+
Sbjct: 98 NQHIHVCPFVSRGQWDKSRV-FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEG 156
Query: 78 PNKRFAIVQFETASEAKLAMMKMNG 102
++RF V FE A A A+ KMNG
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNG 181
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 21 NEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN--- 77
N D+ +D+ + + +Y+ IP L+E + A FS++G+++ L ++
Sbjct: 14 NARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGT 73
Query: 78 -PNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAH 114
+K FA + +E LA+ +NG+ L I + H
Sbjct: 74 GKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDH 111
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSK----NPNKRFAIVQFETASEAKLAMM 98
T++Y+ N+ ++D +R AFS +G V+ A + + + ++ F V + + SEA+ A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 99 KMNGSEPLNLKISI 112
M+G E ++S+
Sbjct: 63 GMDGKELNGRRVSV 76
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKL 95
+ D LY+ N+ ++++ +R F++ G + S ++ ++P+ K V F ASEA
Sbjct: 324 KFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASR 383
Query: 96 AMMKMNG 102
+ +MNG
Sbjct: 384 VLNEMNG 390
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN---PNKRFAIVQFETASEAKLAMMKMN 101
L++ N+ + + + AFS G ++S +++ + ++ + VQF+T AK A+ K+N
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 102 GSEPLNLKISIAHKL-YPYHDTHRMNVRWAKIYVKS 136
G + +I + L ++ +++ +YVK+
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKN 231
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMK 99
K+Y+ N+P DG+R FSK G ++S R+ N+ FA + F T+ E + A +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF-TSGEERDAALS 271
Query: 100 MNGSE 104
NG++
Sbjct: 272 FNGTQ 276
Score = 35.1 bits (77), Expect = 0.019
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMMK 99
+LY+ NIPR + F G V+S +S+NP ++ V + + AK+A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 100 MNGSE 104
++G+E
Sbjct: 169 LDGTE 173
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 26 DVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIV 85
D++Y+ + L++ N+ +S + + FS +G++ R + + N + +
Sbjct: 278 DIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQ-VYI 336
Query: 86 QFETASEAKLAMMKMNGSEPLNLKISIA 113
+F +AK+A+ +NG E ++ +A
Sbjct: 337 EFFDVRKAKVALQGLNGLEVAGRQLKLA 364
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 28 QYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAI 84
Q DN + + + LY+ N+ ++E +R F +G+++SA++ + N K F
Sbjct: 289 QKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGF 348
Query: 85 VQFETASEAKLAMMKMNG 102
V F E+K A +NG
Sbjct: 349 VCFSNCEESKQAKRYLNG 366
Score = 35.9 bits (79), Expect = 0.011
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 31 DDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSA---RLSKNPNKRFAIVQF 87
D+ A D T +Y+ N+ +++D + FS++G V S R ++ F V F
Sbjct: 190 DERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNF 249
Query: 88 ETASEAKLAMMKMNGSEPLNLKISIAHKL----------YPYHDTH--RMNVRWAKIYVK 135
AK AM + G + + K+ + L + D + N+RW+ +YVK
Sbjct: 250 CNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVK 309
Query: 136 S 136
+
Sbjct: 310 N 310
Score = 34.7 bits (76), Expect = 0.026
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL--SKNPNKRFAIVQFETASEAKLAMMKMNG 102
LY+ N+ ++ + F G +LS ++ +K F VQF+T A A ++G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 103 SEPLNLKISIA 113
S K+ +A
Sbjct: 174 SMVYGKKLFVA 184
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK--RFAIVQFETASEAKLAM 97
+Y+ +I + ++E+G+ FS G+V+ R+ +PN RFA V+F A+ A+
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSAL 184
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMM 98
TKLYI + G E ++ AFS V AR+ N ++ + V F + A A+
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 99 KMNGSEPLNLKISI 112
MNG E IS+
Sbjct: 91 AMNGQELNGFNISV 104
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMK 99
++Y+ N+P + + FS+HGKV+ AR+ ++ F VQ +E +A+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 100 MNGS--EPLNLKISIAHK 115
++G E +K+++A +
Sbjct: 268 LDGQNLEGRAIKVNVAEE 285
Score = 30.7 bits (66), Expect = 0.42
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 30 ADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIV 85
++D G + KL++ N+P + + F + G V + + N ++ F V
Sbjct: 100 SEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFV 159
Query: 86 QFETASEAKLAMMKMNGSEPLNLKISI 112
T EA+ A+ K N E ++++
Sbjct: 160 TMSTVEEAEKAVEKFNSFEVNGRRLTV 186
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMMK 99
K+Y+ N+ + ++++ + FS+ GKV+SA++S+ P + F V F + + + A++
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 100 MNGS 103
+N S
Sbjct: 238 LNNS 241
Score = 33.9 bits (74), Expect = 0.045
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLS----KNPNKRFAIVQFETASEAKLAMMK 99
++YI NIPR ++ + + +HG V ++ ++RF ++ +A + K
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 100 MNGS--EPLNLKISIAHK 115
+NG+ E +K++I K
Sbjct: 137 LNGNTVEGREIKVNITEK 154
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 40 LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKL 95
+ +K+++ I E G+R AFSK+G+V+ A++ ++ FA V F + EA
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 96 AMMKMNGSE 104
A M+++G +
Sbjct: 91 A-MQLDGQD 98
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 36.7 bits (81), Expect = 0.006
Identities = 17/72 (23%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 33 NAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASE 92
NAG+ ++T +++ + +++D +++ F + G++L ++ P KR VQ+ +
Sbjct: 251 NAGDN-DPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP--PGKRCGFVQYANKAS 307
Query: 93 AKLAMMKMNGSE 104
A+ A+ +NG++
Sbjct: 308 AEHALSVLNGTQ 319
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.008
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
T + + N+ + ++E+ ++ AFS+ G+V+ ++ K + VQF+T A+ A+ +M G
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKIP--ATKGYGYVQFKTRPSAEEAVQRMQG 294
Score = 29.1 bits (62), Expect = 1.3
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 22 EHTYDVQYADDNAGEQVQL--DHTKLYIINIPRGLSEDGIRAAFSKH-GKVLSARLSKNP 78
E T+ + +A +G++V DH+ +++ ++ +++ ++ F H V A++ +P
Sbjct: 94 ELTFRLNWASFGSGQKVDAGPDHS-IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDP 152
Query: 79 N----KRFAIVQFETASEAKLAMMKMNG 102
+ K + V+F SE AM +MNG
Sbjct: 153 STGRSKGYGFVKFAEESERNRAMAEMNG 180
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 36.3 bits (80), Expect = 0.008
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMM 98
+K+ + N+P SED ++ FS G++ +L K+ +K +A +QF + +A LA+
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 99 KMN 101
M+
Sbjct: 100 TMD 102
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.3 bits (80), Expect = 0.008
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 32 DNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAIVQF 87
DN V H K+Y N+ L+ G++ AF VL A++ N + F + F
Sbjct: 209 DNNRSYVDSPH-KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISF 267
Query: 88 ETASEAKLAMMKMNGSE 104
E+A + A+ MNG E
Sbjct: 268 ESAENVQSALATMNGVE 284
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 12 EWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLS 71
E + + ++ +E +V+ ++ Q + +LY+ N+P ++ + F + G V+
Sbjct: 87 EEEEVEEEGDEGEEEVE--EEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144
Query: 72 ARL----SKNPNKRFAIVQFETASEAKLAMMKMNGSE 104
++ + ++ F V + EAK AM N S+
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQ 181
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.3 bits (80), Expect = 0.008
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 17 RDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHG-----KVLS 71
+D + T D + DD+ V+ KL+I + SE +RAAF G K++
Sbjct: 258 KDYEGDSTQDSRDQDDSESPPVKTK--KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIM 315
Query: 72 ARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
++SK +K +A +++ T A A+ +MNG
Sbjct: 316 DKISKR-SKGYAFLEYTTEEAAGTALKEMNG 345
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.3 bits (80), Expect = 0.008
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 24 TYDVQYAD--DNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP--- 78
T DV+ + D E+ + ++++ ++ +G SE+ ++ F G+V R+ KNP
Sbjct: 193 TVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTK 252
Query: 79 -NKRFAIVQFETASEAKLAMMKM 100
+K A ++F T +AK A+ ++
Sbjct: 253 KSKGSAFLRFATVEQAKRAVKEL 275
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 35.9 bits (79), Expect = 0.011
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 40 LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKL 95
+ +KL+I + + ED +R AF+K+G+V+ R+ ++ F V F ++ A
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 96 AMMKMNGSE 104
A+ ++G +
Sbjct: 97 AIQALDGRD 105
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN-KRFAIVQFETASEAKLAMMKMNG- 102
+Y+ N+P + E + FSK+G V+ L P +A V+FE A +A A+ +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 103 -SEPLNLKISIAH 114
+ +L++ +AH
Sbjct: 69 DFDGHHLRVELAH 81
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN-KRFAIVQFETASEAKLAMMKMNG- 102
+Y+ N+P + E + FSK+G V+ L P +A V+FE A +A A+ +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 103 -SEPLNLKISIAH 114
+ +L++ +AH
Sbjct: 69 DFDGHHLRVELAH 81
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 35.9 bits (79), Expect = 0.011
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 3 NHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAA 62
N P+RRR + + N+ T Q D + +Y+ +I + ++E+ +
Sbjct: 137 NDHFPRRRRSFGQGKRRMNKRTSLAQKDD--------VIRRTVYVSDIDQQVTEENLAGV 188
Query: 63 FSKHGKVLSARLSKNPNK--RFAIVQFETASEAKLAMMKMNGS 103
F G+V+ R+ +PN RFA ++F T E A + M+G+
Sbjct: 189 FINCGQVVDCRVCGDPNSVLRFAFIEF-TNEEGARAALSMSGT 230
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 35.5 bits (78), Expect = 0.015
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL-SKNPNKRFAIVQFETASEAKLAMMKMNGS 103
LYI N+PR ++++ ++A F HGK+L + P K + F +E M + +
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 95
Query: 104 EPLNLKIS 111
E + S
Sbjct: 96 ERYEIDAS 103
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.5 bits (78), Expect = 0.015
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMK 99
++Y+ N+ G+ + + + FS+ GKV+ AR+ +K F V ++++ E + A+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 100 MNGSE 104
++G++
Sbjct: 265 LDGAD 269
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 35.1 bits (77), Expect = 0.019
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 35 GEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETA 90
G +V+ T LY+ + +++ + A F+K GKV S L P R FA V +
Sbjct: 63 GSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSL 122
Query: 91 SEAKLAMMKMNGS 103
+A+ + +N S
Sbjct: 123 KDAERCIKYLNQS 135
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.1 bits (77), Expect = 0.019
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL-SKNPNKRFAIVQFETASEAKLAMMKMNGS 103
LYI N+PR ++++ ++A F HGK+L + P K + F +E M + +
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 104 E 104
E
Sbjct: 330 E 330
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.1 bits (77), Expect = 0.019
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSK----NPNKRFAIVQFETASEAKLAMM 98
TKLY+ + +ED +R F + G ++ + N K FA +++ET EA A+
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 99 KMNG 102
M+G
Sbjct: 137 GMHG 140
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 34.7 bits (76), Expect = 0.026
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMM 98
+++ +P+ ++E+ + +HG V++ ++ + K+ A+VQFE EA A++
Sbjct: 357 IHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALV 410
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.026
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN-KRFAIVQFETASEAKLAMMKMNG- 102
+Y+ N+P + E + FSK+G V+ L P +A V+F+ A +A+ A+ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 103 -SEPLNLKISIAH 114
+ L++ +AH
Sbjct: 69 DFDGHRLRVELAH 81
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.026
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN-KRFAIVQFETASEAKLAMMKMNG- 102
+Y+ N+P + E + FSK+G V+ L P +A V+F+ A +A+ A+ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 103 -SEPLNLKISIAH 114
+ L++ +AH
Sbjct: 69 DFDGHRLRVELAH 81
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.026
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN-KRFAIVQFETASEAKLAMMKMNG- 102
+Y+ N+P + E + FSK+G V+ L P +A V+F+ A +A+ A+ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 103 -SEPLNLKISIAH 114
+ L++ +AH
Sbjct: 69 DFDGHRLRVELAH 81
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 34.3 bits (75), Expect = 0.034
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLAMMK 99
KL++ ++PR +E+ IR F +HG VL L K+ + V++ T+ +A A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 100 MNGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKSAMAQ 140
++ L Y + R+ K++V S Q
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQ 221
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 34.3 bits (75), Expect = 0.034
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLAMMK 99
KL++ ++PR +E+ IR F +HG VL L K+ + V++ T+ +A A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 100 MNGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKSAMAQ 140
++ L Y + R+ K++V S Q
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQ 221
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 34.3 bits (75), Expect = 0.034
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMK 99
+LY+ N+ G+ + + F++ GKV+ AR+ +K F V ++ E + A+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 100 MNGSE 104
+NG++
Sbjct: 310 LNGAD 314
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 34.3 bits (75), Expect = 0.034
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMK 99
+LY+ N+ G+ + + F++ GKV+ AR+ +K F V ++ E + A+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 100 MNGSE 104
+NG++
Sbjct: 318 LNGAD 322
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 34.3 bits (75), Expect = 0.034
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR-FAIVQFETASEAKLAMMKMNG- 102
+Y+ N+P + E I F K+G+++ L P + V+FE + +A+ A+ +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 103 -SEPLNLKISIAH 114
+ L++ +AH
Sbjct: 69 NLDGCRLRVELAH 81
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 34.3 bits (75), Expect = 0.034
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK--RFAIVQF 87
+Y+ +I + ++E+G+ FS G+V+ R+ +P+ RFA V+F
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEF 187
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.9 bits (74), Expect = 0.045
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS---KNPNKRFAIVQFETASEAKL 95
++ T+L N+P + + IR+ F K+G V+ +S K N+ ++ + EA
Sbjct: 90 EISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAAT 149
Query: 96 AMMKMNGSE 104
A+ + E
Sbjct: 150 ALKSLESCE 158
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 33.1 bits (72), Expect = 0.078
Identities = 15/62 (24%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKM 100
++T +++ + +++D ++ FS++G+++ ++ KR VQF S A+ A+ +
Sbjct: 259 NNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG--KRCGFVQFSEKSCAEEALRML 316
Query: 101 NG 102
NG
Sbjct: 317 NG 318
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAIVQFETASEAKLAMMK 99
KLY+ N+ +SE +R F G V +L +P K F +QF +K A +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 100 MNG 102
+NG
Sbjct: 326 LNG 328
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 37 QVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASE 92
+V+ T LY+ + +++ + A F+K GKV S L P R FA V + +
Sbjct: 66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 125
Query: 93 AKLAMMKMNGS 103
A+ + +N S
Sbjct: 126 AERCIKYLNQS 136
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 38 VQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEA 93
++L TKL+I + G + +R AF+ G V+ A++ ++ F V F A
Sbjct: 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAA 89
Query: 94 KLAMMKMNGSE 104
A+ +M+G E
Sbjct: 90 TAAISEMDGKE 100
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 38 VQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEA 93
++L TKL+I + G + +R AF+ G V+ A++ ++ F V F A
Sbjct: 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAA 89
Query: 94 KLAMMKMNGSE 104
A+ +M+G E
Sbjct: 90 TAAISEMDGKE 100
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 32.3 bits (70), Expect = 0.14
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 45 LYIINIP-RGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
L++IN + + F +GK+++ R+ +N FA +Q+E +A A+ N S
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDATNSS 153
Query: 104 EPLNLKISIAH 114
+ ++ IS+ +
Sbjct: 154 KLMDKVISVEY 164
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 32.3 bits (70), Expect = 0.14
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 45 LYIINIP-RGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
L++IN + + F +GK+++ R+ +N FA +Q+E +A A+ N S
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDATNSS 153
Query: 104 EPLNLKISIAH 114
+ ++ IS+ +
Sbjct: 154 KLMDKVISVEY 164
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.14
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 29 YADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAI 84
+A GE + KL I N+P I+ FS G V + KN K FA
Sbjct: 317 WARQLGGEGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAF 376
Query: 85 VQFETASEAKLAMMKMNG 102
V+F +A A+ K NG
Sbjct: 377 VKFTCKKDAANAIKKFNG 394
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 32.3 bits (70), Expect = 0.14
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKM 100
+LY+ N+ +SED +R F G V ++ ++ K F VQF +A+ A + +
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNA-LNL 344
Query: 101 NG 102
NG
Sbjct: 345 NG 346
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 32.3 bits (70), Expect = 0.14
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK--RFAIVQFETASEAKLAMMKMNG 102
+Y+ ++ + ++E+ + F G+V+ R+ +PN RFA ++F T E + + ++G
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEF-TDEEGAMTALNLSG 233
Query: 103 S 103
+
Sbjct: 234 T 234
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 45 LYIINIP-RGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFAIVQFETASEAKLAMMKM 100
+ + N+P + ++E+ +R FS+ G++ +L S +++FA + F T EA+ A+ +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 101 N 101
N
Sbjct: 64 N 64
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 45 LYIINIPRGLSED-GIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
L++IN + + F +GK+++ R+ +N FA +Q+E +A A+ N S
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDASNNS 113
Query: 104 EPLNLKISIAH 114
+ ++ IS+ +
Sbjct: 114 KLMDKVISVEY 124
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 45 LYIINIPRGLSED-GIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
L++IN + + F +GK+++ R+ +N FA +Q+E +A A+ N S
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDASNNS 154
Query: 104 EPLNLKISIAH 114
+ ++ IS+ +
Sbjct: 155 KLMDKVISVEY 165
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 0.18
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMK 99
++Y+ N+P + + FS+HGKV+ AR+ ++ F V E A+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 100 MNGS--EPLNLKISIAHKLYP 118
++G E +++++A + P
Sbjct: 305 LDGQNLEGRAIRVNVAEERPP 325
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 31.5 bits (68), Expect = 0.24
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 22 EHTYDVQYADDNAGEQVQLDHTK--LYIINIPRGLSEDGIRAAFSKHGKVLSA---RLSK 76
E + D + + + E+ Q + K L++ N+P +S + I F + G V + R
Sbjct: 72 ETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD 131
Query: 77 NPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIA 113
N+ FA V + EA+ A+ K + + IS++
Sbjct: 132 GKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVS 168
Score = 29.9 bits (64), Expect = 0.73
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHG-KVLSARLS-KNPNKR---FAIVQFETASEAKLAMM 98
KLY+ N+ +R F+ +SAR+ +P R + V F T EA+ A+
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 99 KMNGSE----PLNLKISI 112
K+NG E P+ LK S+
Sbjct: 255 KLNGKEIMGRPITLKFSL 272
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.1 bits (67), Expect = 0.31
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMM 98
T L++ + + + +G+R AF++ G+V A++ + +K F V++ T ++ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 99 KMNG 102
M+G
Sbjct: 116 GMDG 119
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 31.1 bits (67), Expect = 0.31
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK--RFAIVQFETASEAKLAM 97
+Y+ +I + ++E+ + F G+V+ R+ +PN RFA ++F A+ A+
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEVGARTAL 206
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 0.42
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLA 96
D L ++NI + D + F+K+GKV+ + ++ ++ FA V+++ EA A
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 97 MMKMNG 102
+ +++G
Sbjct: 74 VERLDG 79
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 0.42
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLA 96
D L ++NI + D + F+K+GKV+ + ++ ++ FA V+++ EA A
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 97 MMKMNG 102
+ +++G
Sbjct: 74 VERLDG 79
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 30.7 bits (66), Expect = 0.42
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR---FAIVQFETASEAKLAMMK 99
T+L++ N+ +G++ + IR FS+ G+V + + N R A V + S+A A+ K
Sbjct: 93 TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKK 152
Query: 100 MNG----SEPLNLKI 110
N P+ L+I
Sbjct: 153 YNNVLLDGRPMRLEI 167
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.7 bits (66), Expect = 0.42
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMMKM 100
L++ I +E+ + AFS++G+VL + + K FA V F + EA+ A++++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 101 N 101
N
Sbjct: 83 N 83
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 30.7 bits (66), Expect = 0.42
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSK----NPNKRFAIVQFETASEAKLA 96
D KL++ I + SE+ ++ FS++G VL A ++K + F V+F + A
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 97 MMKMNG--SEPLNLKISI-AHKLY 117
+ + +P++++ +I H+LY
Sbjct: 64 LRDTHFILGKPVDVRKAIRKHELY 87
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.3 bits (65), Expect = 0.55
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFA---IVQFETASEAKLAMMKMN 101
L++ N+P I F K G+V+ +L N + V+F + +EA+ A+ K N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 102 GSEPLNLKI--SIAHKLYPY 119
G N KI +A+K Y
Sbjct: 189 GECLDNNKIFLDVANKKATY 208
Score = 29.5 bits (63), Expect = 0.96
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 13 WDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSA 72
WD H + N+ E+V L++ N+ I F+ G+V+S
Sbjct: 220 WDKDYRRLESHPIEEDERPPNSVEEV------LFVANLSPQTKISDIFDFFNCVGEVVSI 273
Query: 73 RLSKNPNKR---FAIVQFETASEAKLAMMKMNGSEPLNLKISI-AHKLYPY 119
RL N + + V+F +A E K A+ NG + KI I K PY
Sbjct: 274 RLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAKTAPY 324
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.3 bits (65), Expect = 0.55
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 31 DDNAGEQV-QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS----KNPNKRFAIV 85
+ G Q+ + K+Y+ N+P + D + F +G V L ++ FA+
Sbjct: 154 NQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
Query: 86 QFETASEAKLAM---MKMNGSEPLNLKISIAHK 115
++TA A+ A+ +K+ + LN K+++ K
Sbjct: 214 VYKTAEGAQAALADPVKVIDGKHLNCKLAVDGK 246
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.3 bits (65), Expect = 0.55
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 31 DDNAGEQV-QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS----KNPNKRFAIV 85
+ G Q+ + K+Y+ N+P + D + F +G V L ++ FA+
Sbjct: 154 NQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
Query: 86 QFETASEAKLAM---MKMNGSEPLNLKISIAHK 115
++TA A+ A+ +K+ + LN K+++ K
Sbjct: 214 VYKTAEGAQAALADPVKVIDGKHLNCKLAVDGK 246
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 29.9 bits (64), Expect = 0.73
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 31 DDNAGEQVQLDHT--KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAI 84
DD E L + L++ +SE ++ FS+ G+V + ++ N R +
Sbjct: 44 DDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGY 103
Query: 85 VQFETASEAKLAMMKMNG 102
V F + +A+ A+ MNG
Sbjct: 104 VWFNSKEDAQSAVEAMNG 121
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.9 bits (64), Expect = 0.73
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 31 DDNAGEQVQLDHT--KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAI 84
DD E L + L++ +SE ++ FS+ G+V + ++ N R +
Sbjct: 63 DDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGY 122
Query: 85 VQFETASEAKLAMMKMNG 102
V F + +A+ A+ MNG
Sbjct: 123 VWFNSKEDAQSAVEAMNG 140
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 29.9 bits (64), Expect = 0.73
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLS-KNPNKRFAIVQFETASEAKLAMMKMNGS 103
LY+ N+P ++ + + F K+G + R+ K A V +E +AK A+ ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80
Query: 104 EPLN 107
N
Sbjct: 81 NVAN 84
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.9 bits (64), Expect = 0.73
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 26 DVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KR 81
+++ DN E + + KLY+ IP +ED IR+ F G ++ P
Sbjct: 145 EIEVNTDNKEEDGVVPN-KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSG 203
Query: 82 FAIVQFETASEAKLAM 97
A + F+T AK A+
Sbjct: 204 IAFITFDTEDGAKRAL 219
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.9 bits (64), Expect = 0.73
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
LY+ +PR I F G+V+S +L+ N V+F +A+EAK A+ N
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625
Query: 102 G 102
G
Sbjct: 626 G 626
Score = 26.2 bits (55), Expect = 9.0
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL-SKNPNKRF--AIVQFETASE 92
E V L L I ++PR I F G+V++ RL K F V+F +A E
Sbjct: 804 EAVALREKVLIIAHVPRRTKISHIIDFFKDAGQVVNVRLIVDQKGKPFGRGFVEFTSADE 863
Query: 93 AKLAMMKMNGSE 104
AK + + E
Sbjct: 864 AKKVRLVYSNDE 875
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 29.5 bits (63), Expect = 0.96
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGK----VLSARLSKNPNKRFAIVQFETASEAKLAMMK 99
KL ++ IP + DG++ SK G ++ S ++ F V F +A +AK A+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 100 MN--GSEPLNLKIS 111
+ G+ L +K++
Sbjct: 64 EHFLGNRILEVKVA 77
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 29.5 bits (63), Expect = 0.96
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKV--LSARLSKNPNKRFAIVQFETASEAKLAM 97
LY+ NIP S + ++ F +HG+V + K + F V + S A A+
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAV 348
>At3g46470.1 68416.m05038 hypothetical protein
Length = 199
Score = 29.5 bits (63), Expect = 0.96
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 24 TYDVQYADDNAGEQVQ-LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRF 82
T+D +YA + E + L+ L + N+ R +SE I F + ++ N + F
Sbjct: 9 TWDAKYASSSDEEFEEFLESNILMLSNVHRKISELEILEFFQG----CNCQVVLNKKREF 64
Query: 83 AIVQFETASEAKLAMMKMNGSEPLNLKISIAHKLYPYH 120
V+F + EA A+ N + + IS+ YP +
Sbjct: 65 R-VEFPSHEEAMAALQNFNEVKLVGRTISLTRSTYPMY 101
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMM 98
+KL++ + G + ++ AF+ G+V A + ++ F V F A A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 99 KMNGSE 104
+M+G E
Sbjct: 95 EMDGKE 100
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMM 98
+KL++ + G + ++ AF+ G+V A + ++ F V F A A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 99 KMNGSE 104
+M+G E
Sbjct: 95 EMDGKE 100
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSK----NPNKRFAIVQFETASEAKLAMMK 99
K+++ IP ++ED ++ F+K+G V+ ++ + N ++ F V F++ + K
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 100 MNGSEPLNLKISI 112
N + + ++S+
Sbjct: 170 GNMIDMADTQVSL 182
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.1 bits (62), Expect = 1.3
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS----KNPNKRFAIVQFETASEAKLAMM 98
+KL+I + + E ++ AFS G+V R++ ++ F V F +A A
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 99 KMNGSEPLN--LKISIA 113
M+G L L+IS A
Sbjct: 101 AMDGKGLLGRPLRISFA 117
>At5g23930.1 68418.m02810 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 457
Score = 28.7 bits (61), Expect = 1.7
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 16 MRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHG---KVLSA 72
+ D+ T+ V Y D+ G +L + N + D + +G +S+
Sbjct: 47 LEDERKRKTFTVSYLIDSLGLTTKLAESISMKANFDEKGNPDSVLKLLRSYGFKDSQISS 106
Query: 73 RLSKNPNKRFAIVQFETASEAKLAMMKMNGSEPLNL 108
+S P RF I E AKL +K+NG+ L
Sbjct: 107 IISTYP--RFLIENPEKTLRAKLHFLKLNGASSSEL 140
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 32 DNAGEQVQLDHTKLYIINIPRGLSE-DGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETA 90
+N + Q L++ +P + D I A F K GKV+ + N + F VQF
Sbjct: 427 NNTRKPTQKAMRTLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAF--VQFSKR 484
Query: 91 SEAKLAM 97
EA+ A+
Sbjct: 485 EEAESAL 491
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 32 DNAGEQVQLDHTKLYIINIPRGLSE-DGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETA 90
+N + Q L++ +P + D I A F K GKV+ + N + F VQF
Sbjct: 427 NNTRKPTQKAMRTLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAF--VQFSKR 484
Query: 91 SEAKLAM 97
EA+ A+
Sbjct: 485 EEAESAL 491
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSK----NPNKRFAIVQFETASEAKLAMMK 99
K+++ IP ++ED ++ F+K+G V+ ++ + N ++ F V F++ + K
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 100 MNGSEPLNLKISI 112
N + + ++ I
Sbjct: 170 GNMIDMADTQVEI 182
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 28 QYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
Q A DNA + KLY+ I + +E IR F K+G V L K+
Sbjct: 99 QSATDNADGSI----AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKD 144
>At5g27160.1 68418.m03241 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 702
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 33 NAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASE 92
+ GEQ++ ++ + ++ ++P S ++ A + K + A L+K+ N+R ++ A E
Sbjct: 450 SGGEQMEEENVQRHVPDVPGSSSSCSLKEAIDEGFKRVMAMLAKH-NERLVTIERRQAGE 508
Query: 93 A 93
+
Sbjct: 509 S 509
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.9 bits (59), Expect = 2.9
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 6 RPQRRREWDPMRDDFNEHTYDVQYAD-----DNAGEQVQLDH-----TKLYIINIPRGLS 55
R +R ++ + RD +++T ++ + D +G LD T LY++N+ +
Sbjct: 140 RERRNQDRENSRDHNSDNTSSSRFDELPDYFDPSGRLGSLDDGDPQTTNLYVVNLSSKVD 199
Query: 56 EDGIRAAFSKHGKVLSARL-------SKNPNKRFAIVQFETASEAKLAMMKMNG 102
E+ + F + G + S ++ K + V F ++ + A KM G
Sbjct: 200 ENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADGEAAKEKMQG 253
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 29 YADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFE 88
Y + GE + +++ I + ++ +R FS+ G+V+S ++ K VQF
Sbjct: 310 YGSQSDGEST---NATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP--VGKGCGFVQFA 364
Query: 89 TASEAKLAMMKMNGS 103
A+ A+ +NG+
Sbjct: 365 DRKSAEDAIESLNGT 379
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 38 VQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAIVQFETASEA 93
+Q D+ KL+I I +E+ ++ FS G+V+ A + K+ + F V F + A
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 94 KLAMMKMNGSEPLNLKISIAHKLYPYHDTHRMN 126
++ + + + ++ ++ A K P D + +N
Sbjct: 61 EIVITEKHN---IDGRLVEAKKAVPRDDQNMVN 90
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 38 VQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAIVQFETASEA 93
+Q D+ KL+I I +E+ ++ FS G+V+ A + K+ + F V F + A
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 94 KLAMMKMNGSEPLNLKISIAHKLYPYHDTHRMN 126
++ + + + ++ ++ A K P D + +N
Sbjct: 61 EIVITEKHN---IDGRLVEAKKAVPRDDQNMVN 90
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASE 92
L++ + +ED +R SK+G++ + RL ++ ++ + V++ET E
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKE 117
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 55 SEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
++ +R F+ +++ + ++ P K F + FE+ +A+ A+ +NG
Sbjct: 83 TDQSLRQLFAPFARLIKDQQTQRP-KGFGFITFESEDDAQKALKALNG 129
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHG 67
TKLYI N+ G+S + I+ FS+ G
Sbjct: 108 TKLYISNLDYGVSNEDIKELFSEVG 132
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 73 RLSKNPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAH 114
R+ P++ FA+V+F +A EA+ + G N +I I +
Sbjct: 392 RVKSYPSRNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMY 433
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEA-KLAMMKMNGS 103
L++ N+P +E+ + G V++ + + N+ A ++FE ++A ++ + S
Sbjct: 20 LHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSS 79
Query: 104 EPLNLK 109
EP ++
Sbjct: 80 EPAQVR 85
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 38 VQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
++++ KL+I I SED +R F G+VL A + K+
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 38 VQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
++++ KL+I I SED +R F G+VL A + K+
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At2g47150.1 68415.m05888 short-chain dehydrogenase/reductase (SDR)
family protein similar to stem secoisolariciresinol
dehydrogenase GI:13752458 from [Forsythia x intermedia]
Length = 200
Score = 27.1 bits (57), Expect = 5.1
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 47 IINIPRGLSEDGIRAA--FSKHG-KVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
I+ I G S G +A F+ HG +V+ L + K +T + M++ +
Sbjct: 5 IVIITGGASGTGAESARLFTDHGAQVVVVDLQEEQGKTSPFQSAKTEQVFTVVMLQTRRN 64
Query: 104 EP--LNLKISIAH-KLYPYHDTHRMNVRWAKIYVKSAMAQRIQ 143
+P L SI L +H T +NVR A + +K A ++
Sbjct: 65 QPGVLETPGSILDLNLERFHRTMAVNVRGAAVSIKHAARAMVE 107
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLS-KNPNKRFAIVQFETASEAKLAM--MKMN 101
LYI N+P ++ + F ++ + R+ + K A V +E +AK A+ + +
Sbjct: 22 LYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAVDHLWLQ 81
Query: 102 GSEPL 106
SEP+
Sbjct: 82 HSEPV 86
>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
profile: PF04096 nucleoporin autopeptidase
Length = 1046
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 60 RAAFSKHGK----VLSARLSKNPNKRFAIVQFETASEAKL 95
R A+SK + +L + LSKNP++ + FETA +A L
Sbjct: 979 RVAYSKMAEEICDLLLSDLSKNPSRETQLTCFETAFDAPL 1018
>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS-KNP 78
+ +L +I +P E+G + AF+ H K + R+ NP
Sbjct: 269 EKVELKVIGVPYPSGENGCKVAFTTHSKEVCGRMGVDNP 307
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
L + ++P G+ D + FS++G S + A V F+ + A A ++NG
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNG 87
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 55 SEDGIRAAFSKHGKVLSAR--LSK--NPNKRFAIVQFETASEAKLAMMKMNGSE 104
S+ G+R AF K+G ++ A+ L K ++ F + F+ A+ MNG +
Sbjct: 19 SDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMD 72
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP 78
+++ N+ G ++D + F+K G+VL A + +P
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDP 551
>At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI,
chloroplast / Mg-protoporphyrin IX chelatase (CHLI) (CS)
(CH42) identical to SP|P161127 Magnesium-chelatase
subunit chlI, chloroplast precursor (Mg-protoporphyrin
IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana}
Length = 424
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 35 GEQVQLDHTKLYIINIPRGLSEDGI 59
GEQV + TK+ ++++P G +ED +
Sbjct: 168 GEQVPVIATKINMVDLPLGATEDRV 192
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN-PNKRFAIVQFETASEAK 94
E + +++ +P ++ I A K G + + + K+ P +FA V FE A A
Sbjct: 738 EGTESHEASVFLKRLPLDVTFALIEDALKKFGPINAISIIKSGPLYKFAFVDFEKADVAN 797
Query: 95 LAMM 98
A+M
Sbjct: 798 RAIM 801
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR-FAIVQFETASEAKLAMMKMNG 102
L I+N+ +S +R F +G+V R + P KR V+F +A A+ MNG
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVR--ETPCKREQRFVEFFDVRDAAKALRVMNG 241
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,519
Number of Sequences: 28952
Number of extensions: 119944
Number of successful extensions: 489
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 159
length of query: 147
length of database: 12,070,560
effective HSP length: 75
effective length of query: 72
effective length of database: 9,899,160
effective search space: 712739520
effective search space used: 712739520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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